Genes within 1Mb (chr12:112762920:G:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 344082 sc-eQTL 8.36e-01 -0.0235 0.114 0.059 PB L2
ENSG00000089022 MAPKAPK5 920692 sc-eQTL 2.34e-01 -0.294 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -596573 sc-eQTL 7.93e-01 -0.062 0.235 0.059 PB L2
ENSG00000089127 OAS1 -143863 sc-eQTL 8.16e-02 0.291 0.166 0.059 PB L2
ENSG00000089248 ERP29 749572 sc-eQTL 5.57e-01 -0.0778 0.132 0.059 PB L2
ENSG00000111275 ALDH2 996033 sc-eQTL 3.37e-01 0.223 0.231 0.059 PB L2
ENSG00000111300 NAA25 654124 sc-eQTL 7.28e-01 -0.086 0.246 0.059 PB L2
ENSG00000111331 OAS3 -175524 sc-eQTL 4.86e-01 0.138 0.198 0.059 PB L2
ENSG00000111335 OAS2 -215475 sc-eQTL 9.32e-01 0.0151 0.177 0.059 PB L2
ENSG00000123064 DDX54 -422559 sc-eQTL 3.09e-01 -0.242 0.237 0.059 PB L2
ENSG00000135144 DTX1 -293789 sc-eQTL 1.34e-01 -0.316 0.209 0.059 PB L2
ENSG00000135148 TRAFD1 637382 sc-eQTL 4.75e-01 -0.181 0.252 0.059 PB L2
ENSG00000139405 RITA1 -422606 sc-eQTL 9.76e-01 -0.00525 0.176 0.059 PB L2
ENSG00000151176 PLBD2 -595646 sc-eQTL 5.84e-01 0.123 0.224 0.059 PB L2
ENSG00000173064 HECTD4 380481 sc-eQTL 8.52e-02 -0.314 0.181 0.059 PB L2
ENSG00000179295 PTPN11 344569 sc-eQTL 8.85e-01 0.035 0.242 0.059 PB L2
ENSG00000186815 TPCN1 -458130 sc-eQTL 1.60e-01 0.324 0.229 0.059 PB L2
ENSG00000198270 TMEM116 749735 sc-eQTL 5.35e-01 0.157 0.252 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 920018 sc-eQTL 2.88e-01 0.222 0.208 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -596573 eQTL 0.00924 0.146 0.056 0.0 0.0 0.0427
ENSG00000089248 ERP29 749572 eQTL 0.0031 -0.0913 0.0308 0.00348 0.0 0.0427
ENSG00000111275 ALDH2 996033 pQTL 0.245 -0.0691 0.0595 0.00166 0.0 0.0466
ENSG00000111275 ALDH2 996033 eQTL 0.00768 0.106 0.0395 0.0 0.0 0.0427
ENSG00000111300 NAA25 654124 eQTL 0.0426 -0.0577 0.0284 0.0 0.0 0.0427
ENSG00000173064 HECTD4 380481 eQTL 5.37e-08 0.182 0.0333 0.0 0.0 0.0427
ENSG00000186710 CFAP73 -386938 eQTL 0.0478 0.151 0.0763 0.0 0.0 0.0427
ENSG00000234608 MAPKAPK5-AS1 920018 eQTL 0.0358 -0.0649 0.0309 0.0 0.0 0.0427


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089060 SLC8B1 -596573 2.69e-07 1.35e-07 4.69e-08 2.26e-07 9.01e-08 9.91e-08 1.61e-07 5.4e-08 1.45e-07 5.42e-08 1.57e-07 9e-08 1.45e-07 7.13e-08 5.91e-08 7.3e-08 3.98e-08 1.26e-07 6.07e-08 4.3e-08 1.19e-07 1.27e-07 1.44e-07 2.93e-08 1.63e-07 1.21e-07 1.12e-07 9.74e-08 1.09e-07 1.07e-07 1.06e-07 2.9e-08 3.96e-08 8.25e-08 5.64e-08 3.93e-08 5.31e-08 8.37e-08 6.57e-08 3.67e-08 5.45e-08 1.33e-07 5.27e-08 1.84e-08 3.83e-08 1.77e-08 1.22e-07 3.83e-09 4.9e-08
ENSG00000089248 ERP29 749572 2.66e-07 1.16e-07 3.59e-08 1.9e-07 9.65e-08 9.87e-08 1.38e-07 5.33e-08 1.4e-07 4.4e-08 1.6e-07 7.75e-08 1.26e-07 6.21e-08 5.53e-08 7.89e-08 4.63e-08 1.14e-07 5.21e-08 4.21e-08 1.04e-07 1.28e-07 1.26e-07 4.16e-08 1.33e-07 1.19e-07 1.08e-07 9.15e-08 1.02e-07 1.12e-07 9.73e-08 3.92e-08 3.26e-08 8.82e-08 8.98e-08 3.87e-08 5.06e-08 9.25e-08 7.23e-08 3.37e-08 4.46e-08 1.35e-07 3.91e-08 7.21e-09 5.59e-08 1.83e-08 1.23e-07 4.09e-09 4.79e-08
ENSG00000173064 HECTD4 380481 4.89e-07 5.33e-07 8.83e-08 4.06e-07 1.1e-07 1.74e-07 4.42e-07 8.17e-08 3.32e-07 1.7e-07 3.25e-07 2.49e-07 4.88e-07 1.07e-07 1.26e-07 1.26e-07 8.64e-08 2.96e-07 1.69e-07 9.17e-08 1.6e-07 2.7e-07 2.67e-07 9.63e-08 6.65e-07 2.13e-07 2.71e-07 1.88e-07 2.03e-07 3.93e-07 2.55e-07 7.91e-08 5.86e-08 1.23e-07 2.7e-07 3.57e-08 7.52e-08 9.46e-08 3.82e-08 5.32e-08 3.27e-08 3.55e-07 3.14e-08 4.15e-08 7.89e-08 1.59e-08 1.04e-07 0.0 4.59e-08