Genes within 1Mb (chr12:112760001:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 341163 sc-eQTL 8.36e-01 -0.0235 0.114 0.059 PB L2
ENSG00000089022 MAPKAPK5 917773 sc-eQTL 2.34e-01 -0.294 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -599492 sc-eQTL 7.93e-01 -0.062 0.235 0.059 PB L2
ENSG00000089127 OAS1 -146782 sc-eQTL 8.16e-02 0.291 0.166 0.059 PB L2
ENSG00000089248 ERP29 746653 sc-eQTL 5.57e-01 -0.0778 0.132 0.059 PB L2
ENSG00000111275 ALDH2 993114 sc-eQTL 3.37e-01 0.223 0.231 0.059 PB L2
ENSG00000111300 NAA25 651205 sc-eQTL 7.28e-01 -0.086 0.246 0.059 PB L2
ENSG00000111331 OAS3 -178443 sc-eQTL 4.86e-01 0.138 0.198 0.059 PB L2
ENSG00000111335 OAS2 -218394 sc-eQTL 9.32e-01 0.0151 0.177 0.059 PB L2
ENSG00000123064 DDX54 -425478 sc-eQTL 3.09e-01 -0.242 0.237 0.059 PB L2
ENSG00000135144 DTX1 -296708 sc-eQTL 1.34e-01 -0.316 0.209 0.059 PB L2
ENSG00000135148 TRAFD1 634463 sc-eQTL 4.75e-01 -0.181 0.252 0.059 PB L2
ENSG00000139405 RITA1 -425525 sc-eQTL 9.76e-01 -0.00525 0.176 0.059 PB L2
ENSG00000151176 PLBD2 -598565 sc-eQTL 5.84e-01 0.123 0.224 0.059 PB L2
ENSG00000173064 HECTD4 377562 sc-eQTL 8.52e-02 -0.314 0.181 0.059 PB L2
ENSG00000179295 PTPN11 341650 sc-eQTL 8.85e-01 0.035 0.242 0.059 PB L2
ENSG00000186815 TPCN1 -461049 sc-eQTL 1.60e-01 0.324 0.229 0.059 PB L2
ENSG00000198270 TMEM116 746816 sc-eQTL 5.35e-01 0.157 0.252 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 917099 sc-eQTL 2.88e-01 0.222 0.208 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -599492 eQTL 0.0184 0.133 0.0564 0.0 0.0 0.0422
ENSG00000089248 ERP29 746653 eQTL 0.00231 -0.0946 0.0309 0.00431 0.00115 0.0422
ENSG00000111275 ALDH2 993114 pQTL 0.295 -0.0627 0.0598 0.00149 0.0 0.0459
ENSG00000111275 ALDH2 993114 eQTL 0.0108 0.102 0.0398 0.0 0.0 0.0422
ENSG00000173064 HECTD4 377562 eQTL 3.7e-08 0.186 0.0335 0.0 0.0 0.0422
ENSG00000234608 MAPKAPK5-AS1 917099 eQTL 0.0311 -0.067 0.0311 0.0 0.0 0.0422


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089060 SLC8B1 -599492 8.85e-07 6.76e-07 1.48e-07 6.45e-07 1.1e-07 3.08e-07 7.02e-07 9.07e-08 5.02e-07 2.06e-07 5.58e-07 3.11e-07 1.63e-06 2.12e-07 2.44e-07 2.1e-07 3.24e-07 4.16e-07 3.95e-07 3.93e-07 2.17e-07 3.92e-07 4.01e-07 2.19e-07 9.15e-07 2.54e-07 2.52e-07 3.18e-07 5.16e-07 6.98e-07 3.32e-07 6.2e-08 4.28e-08 3.55e-07 3.98e-07 1.71e-07 5.03e-07 9.58e-08 3.73e-07 3.24e-07 2.57e-07 6.27e-07 1.65e-08 8.96e-08 9.95e-08 3.87e-08 9.1e-08 2.38e-08 4.61e-08
ENSG00000089248 ERP29 746653 4.68e-07 2.88e-07 8.55e-08 4.31e-07 1.01e-07 1.74e-07 4.53e-07 5.78e-08 2.26e-07 1.05e-07 2.07e-07 1.46e-07 9.57e-07 1.1e-07 7.79e-08 1.13e-07 6.63e-08 2.9e-07 1.97e-07 1.31e-07 1.48e-07 2.15e-07 2.48e-07 5.01e-08 3.55e-07 1.86e-07 1.33e-07 1.77e-07 2.13e-07 2.39e-07 1.59e-07 4.43e-08 4.76e-08 1.57e-07 3.55e-07 5.7e-08 1.91e-07 5.92e-08 7.63e-08 1.79e-08 1.3e-07 2.65e-07 3.55e-08 2.61e-08 3.4e-08 1.35e-08 8.81e-08 0.0 4.8e-08
ENSG00000173064 HECTD4 377562 1.4e-06 1.81e-06 2.2e-07 2.02e-06 3.36e-07 7.28e-07 1.32e-06 3.44e-07 1.74e-06 5.15e-07 1.84e-06 7.5e-07 3.47e-06 8.94e-07 4.61e-07 9.57e-07 9.81e-07 1.1e-06 6.25e-07 1.15e-06 8.13e-07 1.82e-06 1.34e-06 7.61e-07 2.44e-06 7.37e-07 9.35e-07 8.98e-07 1.65e-06 1.3e-06 7.8e-07 2.31e-07 2.51e-07 1.12e-06 1.06e-06 5.46e-07 7.7e-07 3.23e-07 1.35e-06 3.46e-07 1.96e-07 2.01e-06 1.24e-07 1.93e-07 3.1e-07 2.45e-07 1.9e-07 1.97e-07 8.61e-08