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Genes within 1Mb (chr12:112755598:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 336760 sc-eQTL 6.87e-01 -0.0435 0.108 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 913370 sc-eQTL 7.82e-01 0.058 0.209 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -603895 sc-eQTL 5.08e-01 0.129 0.194 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -151185 sc-eQTL 5.34e-01 -0.108 0.174 0.05 CD4_CTL L2
ENSG00000089248 ERP29 742250 sc-eQTL 1.42e-01 0.223 0.151 0.05 CD4_CTL L2
ENSG00000111300 NAA25 646802 sc-eQTL 2.39e-01 -0.24 0.203 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -182846 sc-eQTL 4.73e-01 -0.141 0.195 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -222797 sc-eQTL 3.78e-02 -0.396 0.189 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -429881 sc-eQTL 4.55e-01 0.147 0.196 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -301111 sc-eQTL 3.63e-01 -0.128 0.141 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 630060 sc-eQTL 5.11e-01 -0.134 0.204 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -429928 sc-eQTL 5.59e-01 -0.114 0.196 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -602968 sc-eQTL 2.31e-01 -0.241 0.2 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 373159 sc-eQTL 4.29e-01 -0.137 0.173 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 337247 sc-eQTL 5.74e-01 -0.11 0.195 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -465452 sc-eQTL 2.92e-01 -0.194 0.183 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 742413 sc-eQTL 2.60e-01 0.229 0.203 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 912696 sc-eQTL 7.71e-01 -0.0567 0.195 0.05 CD4_CTL L2
ENSG00000089009 RPL6 336760 sc-eQTL 9.84e-01 -0.00235 0.115 0.051 NK_CD56bright L2
ENSG00000089022 MAPKAPK5 913370 sc-eQTL 3.98e-01 -0.165 0.195 0.051 NK_CD56bright L2
ENSG00000089060 SLC8B1 -603895 sc-eQTL 1.24e-01 0.308 0.199 0.051 NK_CD56bright L2
ENSG00000089127 OAS1 -151185 sc-eQTL 5.32e-01 -0.0996 0.159 0.051 NK_CD56bright L2
ENSG00000089248 ERP29 742250 sc-eQTL 8.51e-01 -0.0343 0.183 0.051 NK_CD56bright L2
ENSG00000111300 NAA25 646802 sc-eQTL 7.64e-01 0.0565 0.187 0.051 NK_CD56bright L2
ENSG00000111331 OAS3 -182846 sc-eQTL 4.49e-01 -0.128 0.169 0.051 NK_CD56bright L2
ENSG00000111335 OAS2 -222797 sc-eQTL 1.38e-01 -0.222 0.149 0.051 NK_CD56bright L2
ENSG00000123064 DDX54 -429881 sc-eQTL 2.98e-01 -0.213 0.204 0.051 NK_CD56bright L2
ENSG00000135148 TRAFD1 630060 sc-eQTL 7.41e-01 -0.0615 0.186 0.051 NK_CD56bright L2
ENSG00000139405 RITA1 -429928 sc-eQTL 9.57e-03 -0.529 0.202 0.051 NK_CD56bright L2
ENSG00000151176 PLBD2 -602968 sc-eQTL 5.46e-01 0.124 0.205 0.051 NK_CD56bright L2
ENSG00000173064 HECTD4 373159 sc-eQTL 9.29e-01 -0.0147 0.166 0.051 NK_CD56bright L2
ENSG00000179295 PTPN11 337247 sc-eQTL 2.72e-01 -0.201 0.182 0.051 NK_CD56bright L2
ENSG00000198270 TMEM116 742413 sc-eQTL 4.03e-02 -0.414 0.201 0.051 NK_CD56bright L2
ENSG00000234608 MAPKAPK5-AS1 912696 sc-eQTL 7.98e-01 -0.0524 0.204 0.051 NK_CD56bright L2
ENSG00000089009 RPL6 336760 sc-eQTL 8.78e-01 -0.016 0.104 0.063 PB L2
ENSG00000089022 MAPKAPK5 913370 sc-eQTL 1.85e-01 -0.298 0.223 0.063 PB L2
ENSG00000089060 SLC8B1 -603895 sc-eQTL 6.53e-01 -0.0966 0.214 0.063 PB L2
ENSG00000089127 OAS1 -151185 sc-eQTL 1.59e-01 0.215 0.152 0.063 PB L2
ENSG00000089248 ERP29 742250 sc-eQTL 3.83e-01 -0.105 0.12 0.063 PB L2
ENSG00000111275 ALDH2 988711 sc-eQTL 2.22e-01 0.258 0.21 0.063 PB L2
ENSG00000111300 NAA25 646802 sc-eQTL 6.25e-01 -0.11 0.225 0.063 PB L2
ENSG00000111331 OAS3 -182846 sc-eQTL 2.40e-01 0.213 0.18 0.063 PB L2
ENSG00000111335 OAS2 -222797 sc-eQTL 5.70e-01 0.0919 0.161 0.063 PB L2
ENSG00000123064 DDX54 -429881 sc-eQTL 2.84e-01 -0.232 0.216 0.063 PB L2
ENSG00000135144 DTX1 -301111 sc-eQTL 3.04e-01 -0.198 0.192 0.063 PB L2
ENSG00000135148 TRAFD1 630060 sc-eQTL 9.34e-01 -0.0192 0.23 0.063 PB L2
ENSG00000139405 RITA1 -429928 sc-eQTL 9.32e-01 -0.0137 0.16 0.063 PB L2
ENSG00000151176 PLBD2 -602968 sc-eQTL 4.63e-01 0.15 0.204 0.063 PB L2
ENSG00000173064 HECTD4 373159 sc-eQTL 7.83e-02 -0.293 0.165 0.063 PB L2
ENSG00000179295 PTPN11 337247 sc-eQTL 9.42e-01 -0.0162 0.221 0.063 PB L2
ENSG00000186815 TPCN1 -465452 sc-eQTL 3.03e-01 0.217 0.21 0.063 PB L2
ENSG00000198270 TMEM116 742413 sc-eQTL 2.37e-01 0.272 0.228 0.063 PB L2
ENSG00000234608 MAPKAPK5-AS1 912696 sc-eQTL 2.55e-01 0.216 0.189 0.063 PB L2
ENSG00000089009 RPL6 336760 sc-eQTL 4.66e-01 -0.0651 0.0891 0.05 Pro_T L2
ENSG00000089022 MAPKAPK5 913370 sc-eQTL 1.25e-01 -0.314 0.204 0.05 Pro_T L2
ENSG00000089060 SLC8B1 -603895 sc-eQTL 4.52e-02 -0.401 0.199 0.05 Pro_T L2
ENSG00000089127 OAS1 -151185 sc-eQTL 8.70e-01 0.02 0.122 0.05 Pro_T L2
ENSG00000089248 ERP29 742250 sc-eQTL 5.89e-02 0.232 0.122 0.05 Pro_T L2
ENSG00000111300 NAA25 646802 sc-eQTL 5.83e-01 -0.109 0.197 0.05 Pro_T L2
ENSG00000111331 OAS3 -182846 sc-eQTL 2.86e-01 0.183 0.172 0.05 Pro_T L2
ENSG00000111335 OAS2 -222797 sc-eQTL 7.16e-01 0.0533 0.146 0.05 Pro_T L2
ENSG00000123064 DDX54 -429881 sc-eQTL 8.42e-01 0.0346 0.173 0.05 Pro_T L2
ENSG00000135144 DTX1 -301111 sc-eQTL 6.76e-01 -0.0641 0.153 0.05 Pro_T L2
ENSG00000135148 TRAFD1 630060 sc-eQTL 6.23e-02 -0.377 0.201 0.05 Pro_T L2
ENSG00000139405 RITA1 -429928 sc-eQTL 1.86e-01 0.24 0.181 0.05 Pro_T L2
ENSG00000151176 PLBD2 -602968 sc-eQTL 5.11e-01 -0.13 0.198 0.05 Pro_T L2
ENSG00000173064 HECTD4 373159 sc-eQTL 8.18e-01 -0.0414 0.18 0.05 Pro_T L2
ENSG00000179295 PTPN11 337247 sc-eQTL 2.25e-01 0.199 0.164 0.05 Pro_T L2
ENSG00000186815 TPCN1 -465452 sc-eQTL 1.76e-02 -0.425 0.178 0.05 Pro_T L2
ENSG00000198270 TMEM116 742413 sc-eQTL 5.90e-01 0.11 0.204 0.05 Pro_T L2
ENSG00000234608 MAPKAPK5-AS1 912696 sc-eQTL 7.45e-01 -0.0601 0.185 0.05 Pro_T L2
ENSG00000089009 RPL6 336760 sc-eQTL 3.92e-02 -0.169 0.0815 0.051 intMono L2
ENSG00000089022 MAPKAPK5 913370 sc-eQTL 8.97e-01 0.025 0.193 0.051 intMono L2
ENSG00000089060 SLC8B1 -603895 sc-eQTL 9.04e-01 0.0242 0.2 0.051 intMono L2
ENSG00000089127 OAS1 -151185 sc-eQTL 6.92e-03 0.294 0.108 0.051 intMono L2
ENSG00000089169 RPH3A 185218 sc-eQTL 8.74e-01 -0.0292 0.184 0.051 intMono L2
ENSG00000089248 ERP29 742250 sc-eQTL 5.00e-01 -0.118 0.174 0.051 intMono L2
ENSG00000111275 ALDH2 988711 sc-eQTL 5.41e-01 -0.0988 0.162 0.051 intMono L2
ENSG00000111300 NAA25 646802 sc-eQTL 1.64e-01 -0.266 0.19 0.051 intMono L2
ENSG00000111331 OAS3 -182846 sc-eQTL 8.75e-02 0.242 0.141 0.051 intMono L2
ENSG00000111335 OAS2 -222797 sc-eQTL 4.03e-01 0.117 0.14 0.051 intMono L2
ENSG00000123064 DDX54 -429881 sc-eQTL 5.96e-01 0.094 0.177 0.051 intMono L2
ENSG00000135148 TRAFD1 630060 sc-eQTL 6.19e-01 0.082 0.165 0.051 intMono L2
ENSG00000139405 RITA1 -429928 sc-eQTL 3.20e-01 -0.196 0.196 0.051 intMono L2
ENSG00000139410 SDSL -666782 sc-eQTL 9.05e-01 -0.0231 0.193 0.051 intMono L2
ENSG00000151176 PLBD2 -602968 sc-eQTL 9.47e-01 0.0118 0.178 0.051 intMono L2
ENSG00000173064 HECTD4 373159 sc-eQTL 3.36e-04 0.609 0.167 0.051 intMono L2
ENSG00000179295 PTPN11 337247 sc-eQTL 2.39e-01 -0.206 0.174 0.051 intMono L2
ENSG00000186815 TPCN1 -465452 sc-eQTL 7.90e-01 -0.0419 0.157 0.051 intMono L2
ENSG00000198270 TMEM116 742413 sc-eQTL 1.46e-03 0.586 0.182 0.051 intMono L2
ENSG00000234608 MAPKAPK5-AS1 912696 sc-eQTL 2.43e-02 0.458 0.202 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -603895 eQTL 0.0189 0.132 0.0563 0.0 0.0 0.0422
ENSG00000089248 ERP29 742250 eQTL 0.00247 -0.0938 0.0309 0.00413 0.00108 0.0422
ENSG00000111275 ALDH2 988711 pQTL 0.307 -0.0609 0.0596 0.00146 0.0 0.0459
ENSG00000111275 ALDH2 988711 eQTL 0.0107 0.102 0.0397 0.0 0.0 0.0422
ENSG00000173064 HECTD4 373159 eQTL 3.45e-08 0.186 0.0334 0.0 0.0 0.0422
ENSG00000186710 CFAP73 -394260 eQTL 0.0493 0.151 0.0766 0.0 0.0 0.0422
ENSG00000234608 MAPKAPK5-AS1 912696 eQTL 0.0315 -0.0668 0.031 0.0 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089060 SLC8B1 -603895 3.27e-07 1.7e-07 6.42e-08 2.24e-07 1.01e-07 8.4e-08 2.4e-07 6.2e-08 1.89e-07 1.05e-07 1.83e-07 1.59e-07 2.45e-07 8.15e-08 6.27e-08 9.6e-08 5.42e-08 1.91e-07 7.39e-08 6.02e-08 1.26e-07 1.76e-07 1.69e-07 4.17e-08 2.28e-07 1.51e-07 1.31e-07 1.26e-07 1.37e-07 1.33e-07 1.22e-07 4.61e-08 4.37e-08 9.52e-08 5.5e-08 3.36e-08 4.47e-08 6.98e-08 5.84e-08 5.56e-08 4.47e-08 1.55e-07 3.4e-08 7.47e-09 3.55e-08 6.39e-09 7e-08 2.13e-09 4.94e-08
ENSG00000089248 ERP29 742250 2.77e-07 1.35e-07 5.49e-08 1.9e-07 1.01e-07 8.45e-08 1.67e-07 5.75e-08 1.5e-07 6.08e-08 1.63e-07 1.15e-07 1.69e-07 7.37e-08 5.98e-08 7.23e-08 4.18e-08 1.44e-07 6.07e-08 4.8e-08 1.26e-07 1.25e-07 1.44e-07 2.87e-08 1.65e-07 1.22e-07 1.18e-07 9.92e-08 1.23e-07 9.88e-08 1.06e-07 2.96e-08 3.43e-08 8.72e-08 3.52e-08 3.05e-08 5.3e-08 9.03e-08 6.58e-08 4.47e-08 5.39e-08 1.46e-07 5.24e-08 1.2e-08 3.84e-08 1.89e-08 1.2e-07 1.89e-09 5.01e-08
ENSG00000173064 HECTD4 373159 1.13e-06 6.97e-07 1.55e-07 4.39e-07 9.61e-08 3.28e-07 6.29e-07 2.62e-07 7.15e-07 3.16e-07 1.02e-06 5.35e-07 1.05e-06 1.56e-07 3.58e-07 3.68e-07 5.56e-07 4.39e-07 2.79e-07 2.76e-07 2.49e-07 5.5e-07 4.06e-07 3.06e-07 1.2e-06 2.64e-07 4.62e-07 3.78e-07 5.16e-07 7.42e-07 3.81e-07 4.03e-08 5.89e-08 2.08e-07 3.46e-07 2.04e-07 1.44e-07 1.16e-07 7.42e-08 1.61e-08 1.47e-07 6.8e-07 5.03e-08 1.54e-08 1.71e-07 2.71e-08 1.46e-07 3.79e-08 6.14e-08