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Genes within 1Mb (chr12:112728764:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 309926 sc-eQTL 1.73e-01 0.133 0.0969 0.948 DC L1
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 3.90e-01 0.186 0.216 0.948 DC L1
ENSG00000089060 SLC8B1 -630729 sc-eQTL 8.83e-01 -0.0291 0.198 0.948 DC L1
ENSG00000089127 OAS1 -178019 sc-eQTL 8.22e-01 0.0306 0.136 0.948 DC L1
ENSG00000089169 RPH3A 158384 sc-eQTL 5.05e-01 0.126 0.188 0.948 DC L1
ENSG00000089248 ERP29 715416 sc-eQTL 3.24e-01 -0.115 0.117 0.948 DC L1
ENSG00000111275 ALDH2 961877 sc-eQTL 3.18e-01 -0.133 0.133 0.948 DC L1
ENSG00000111300 NAA25 619968 sc-eQTL 8.01e-01 0.0479 0.19 0.948 DC L1
ENSG00000111331 OAS3 -209680 sc-eQTL 2.42e-01 -0.185 0.158 0.948 DC L1
ENSG00000111335 OAS2 -249631 sc-eQTL 6.16e-02 -0.297 0.158 0.948 DC L1
ENSG00000123064 DDX54 -456715 sc-eQTL 5.52e-01 0.11 0.185 0.948 DC L1
ENSG00000135094 SDS -697537 sc-eQTL 1.06e-02 -0.464 0.18 0.948 DC L1
ENSG00000135148 TRAFD1 603226 sc-eQTL 3.30e-01 -0.187 0.191 0.948 DC L1
ENSG00000139405 RITA1 -456762 sc-eQTL 2.07e-01 0.257 0.203 0.948 DC L1
ENSG00000139410 SDSL -693616 sc-eQTL 6.40e-01 -0.0882 0.188 0.948 DC L1
ENSG00000151176 PLBD2 -629802 sc-eQTL 1.45e-01 0.281 0.192 0.948 DC L1
ENSG00000166578 IQCD -492330 sc-eQTL 3.23e-01 -0.172 0.174 0.948 DC L1
ENSG00000173064 HECTD4 346325 sc-eQTL 3.75e-01 0.152 0.171 0.948 DC L1
ENSG00000179295 PTPN11 310413 sc-eQTL 6.17e-01 -0.0919 0.183 0.948 DC L1
ENSG00000186815 TPCN1 -492286 sc-eQTL 7.83e-01 -0.0433 0.157 0.948 DC L1
ENSG00000198270 TMEM116 715579 sc-eQTL 4.96e-01 0.139 0.204 0.948 DC L1
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 6.40e-02 0.383 0.206 0.948 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 309926 sc-eQTL 4.82e-01 -0.0996 0.141 0.949 B_Activated L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 6.37e-01 -0.109 0.231 0.949 B_Activated L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 1.02e-01 0.341 0.208 0.949 B_Activated L2
ENSG00000089127 OAS1 -178019 sc-eQTL 8.70e-01 -0.0289 0.176 0.949 B_Activated L2
ENSG00000089248 ERP29 715416 sc-eQTL 8.29e-02 -0.377 0.216 0.949 B_Activated L2
ENSG00000111275 ALDH2 961877 sc-eQTL 4.61e-02 -0.419 0.209 0.949 B_Activated L2
ENSG00000111300 NAA25 619968 sc-eQTL 6.68e-02 0.439 0.238 0.949 B_Activated L2
ENSG00000111331 OAS3 -209680 sc-eQTL 3.80e-01 0.164 0.186 0.949 B_Activated L2
ENSG00000111335 OAS2 -249631 sc-eQTL 7.01e-02 0.386 0.212 0.949 B_Activated L2
ENSG00000123064 DDX54 -456715 sc-eQTL 8.24e-01 0.0555 0.249 0.949 B_Activated L2
ENSG00000135144 DTX1 -327945 sc-eQTL 5.87e-01 0.0846 0.155 0.949 B_Activated L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 8.22e-01 -0.0495 0.22 0.949 B_Activated L2
ENSG00000139405 RITA1 -456762 sc-eQTL 9.40e-02 0.365 0.217 0.949 B_Activated L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 8.31e-01 -0.0481 0.225 0.949 B_Activated L2
ENSG00000173064 HECTD4 346325 sc-eQTL 1.44e-01 -0.296 0.201 0.949 B_Activated L2
ENSG00000179295 PTPN11 310413 sc-eQTL 2.15e-01 0.294 0.236 0.949 B_Activated L2
ENSG00000186815 TPCN1 -492286 sc-eQTL 5.96e-01 0.117 0.221 0.949 B_Activated L2
ENSG00000198270 TMEM116 715579 sc-eQTL 5.66e-01 -0.121 0.211 0.949 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 8.59e-01 0.0415 0.233 0.949 B_Activated L2
ENSG00000089009 RPL6 309926 sc-eQTL 7.52e-01 -0.0378 0.12 0.949 NK_CD56bright L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 7.41e-01 -0.0669 0.202 0.949 NK_CD56bright L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 3.93e-01 0.177 0.207 0.949 NK_CD56bright L2
ENSG00000089127 OAS1 -178019 sc-eQTL 9.08e-02 -0.278 0.164 0.949 NK_CD56bright L2
ENSG00000089248 ERP29 715416 sc-eQTL 3.67e-01 -0.171 0.189 0.949 NK_CD56bright L2
ENSG00000111300 NAA25 619968 sc-eQTL 9.70e-01 -0.00731 0.194 0.949 NK_CD56bright L2
ENSG00000111331 OAS3 -209680 sc-eQTL 8.27e-01 0.0385 0.176 0.949 NK_CD56bright L2
ENSG00000111335 OAS2 -249631 sc-eQTL 2.17e-01 -0.191 0.154 0.949 NK_CD56bright L2
ENSG00000123064 DDX54 -456715 sc-eQTL 3.53e-01 0.197 0.212 0.949 NK_CD56bright L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 7.38e-01 -0.0648 0.193 0.949 NK_CD56bright L2
ENSG00000139405 RITA1 -456762 sc-eQTL 1.70e-02 0.506 0.21 0.949 NK_CD56bright L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 4.89e-01 0.147 0.212 0.949 NK_CD56bright L2
ENSG00000173064 HECTD4 346325 sc-eQTL 7.77e-02 0.303 0.171 0.949 NK_CD56bright L2
ENSG00000179295 PTPN11 310413 sc-eQTL 6.31e-01 0.091 0.189 0.949 NK_CD56bright L2
ENSG00000198270 TMEM116 715579 sc-eQTL 6.72e-01 -0.089 0.21 0.949 NK_CD56bright L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 6.89e-01 0.0846 0.211 0.949 NK_CD56bright L2
ENSG00000089009 RPL6 309926 sc-eQTL 5.82e-01 0.057 0.103 0.95 NK_HLA L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 9.20e-01 0.0208 0.208 0.95 NK_HLA L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 7.68e-01 0.0585 0.198 0.95 NK_HLA L2
ENSG00000089127 OAS1 -178019 sc-eQTL 5.70e-01 -0.0993 0.174 0.95 NK_HLA L2
ENSG00000089248 ERP29 715416 sc-eQTL 9.98e-01 0.000468 0.181 0.95 NK_HLA L2
ENSG00000111300 NAA25 619968 sc-eQTL 3.29e-01 0.202 0.207 0.95 NK_HLA L2
ENSG00000111331 OAS3 -209680 sc-eQTL 5.90e-01 -0.0981 0.182 0.95 NK_HLA L2
ENSG00000111335 OAS2 -249631 sc-eQTL 7.58e-01 0.0547 0.177 0.95 NK_HLA L2
ENSG00000123064 DDX54 -456715 sc-eQTL 4.60e-01 0.16 0.215 0.95 NK_HLA L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 1.78e-02 -0.471 0.197 0.95 NK_HLA L2
ENSG00000139405 RITA1 -456762 sc-eQTL 2.75e-01 0.227 0.208 0.95 NK_HLA L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 6.02e-01 0.107 0.206 0.95 NK_HLA L2
ENSG00000173064 HECTD4 346325 sc-eQTL 8.34e-01 -0.0391 0.186 0.95 NK_HLA L2
ENSG00000179295 PTPN11 310413 sc-eQTL 1.88e-01 -0.257 0.195 0.95 NK_HLA L2
ENSG00000198270 TMEM116 715579 sc-eQTL 5.90e-01 0.105 0.194 0.95 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 1.46e-01 -0.305 0.209 0.95 NK_HLA L2
ENSG00000089009 RPL6 309926 sc-eQTL 9.43e-01 0.00682 0.095 0.95 Pro_T L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 5.27e-01 -0.138 0.218 0.95 Pro_T L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 2.80e-01 -0.231 0.213 0.95 Pro_T L2
ENSG00000089127 OAS1 -178019 sc-eQTL 4.38e-01 -0.101 0.13 0.95 Pro_T L2
ENSG00000089248 ERP29 715416 sc-eQTL 1.94e-01 -0.17 0.13 0.95 Pro_T L2
ENSG00000111300 NAA25 619968 sc-eQTL 3.70e-01 -0.189 0.21 0.95 Pro_T L2
ENSG00000111331 OAS3 -209680 sc-eQTL 5.85e-01 -0.1 0.183 0.95 Pro_T L2
ENSG00000111335 OAS2 -249631 sc-eQTL 7.81e-01 -0.0433 0.156 0.95 Pro_T L2
ENSG00000123064 DDX54 -456715 sc-eQTL 1.78e-01 0.248 0.183 0.95 Pro_T L2
ENSG00000135144 DTX1 -327945 sc-eQTL 5.72e-02 -0.309 0.162 0.95 Pro_T L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 7.28e-01 -0.0752 0.216 0.95 Pro_T L2
ENSG00000139405 RITA1 -456762 sc-eQTL 9.88e-01 0.00296 0.193 0.95 Pro_T L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 6.55e-01 0.0945 0.211 0.95 Pro_T L2
ENSG00000173064 HECTD4 346325 sc-eQTL 6.76e-01 -0.0802 0.192 0.95 Pro_T L2
ENSG00000179295 PTPN11 310413 sc-eQTL 1.06e-01 0.282 0.174 0.95 Pro_T L2
ENSG00000186815 TPCN1 -492286 sc-eQTL 7.46e-01 -0.0622 0.192 0.95 Pro_T L2
ENSG00000198270 TMEM116 715579 sc-eQTL 6.93e-01 -0.0859 0.217 0.95 Pro_T L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 6.96e-01 -0.0769 0.196 0.95 Pro_T L2
ENSG00000089009 RPL6 309926 sc-eQTL 5.73e-01 0.0583 0.103 0.949 cDC L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 1.54e-01 0.319 0.223 0.949 cDC L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 1.07e-01 0.359 0.221 0.949 cDC L2
ENSG00000089127 OAS1 -178019 sc-eQTL 7.50e-01 0.0495 0.155 0.949 cDC L2
ENSG00000089169 RPH3A 158384 sc-eQTL 3.81e-01 0.166 0.189 0.949 cDC L2
ENSG00000089248 ERP29 715416 sc-eQTL 2.57e-01 -0.179 0.158 0.949 cDC L2
ENSG00000111275 ALDH2 961877 sc-eQTL 5.87e-01 -0.0894 0.164 0.949 cDC L2
ENSG00000111300 NAA25 619968 sc-eQTL 4.34e-01 0.165 0.211 0.949 cDC L2
ENSG00000111331 OAS3 -209680 sc-eQTL 1.45e-01 -0.226 0.154 0.949 cDC L2
ENSG00000111335 OAS2 -249631 sc-eQTL 1.11e-01 -0.28 0.175 0.949 cDC L2
ENSG00000123064 DDX54 -456715 sc-eQTL 8.23e-01 -0.0479 0.214 0.949 cDC L2
ENSG00000135094 SDS -697537 sc-eQTL 1.69e-02 -0.443 0.184 0.949 cDC L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 3.88e-01 0.184 0.213 0.949 cDC L2
ENSG00000139405 RITA1 -456762 sc-eQTL 3.73e-01 0.187 0.21 0.949 cDC L2
ENSG00000139410 SDSL -693616 sc-eQTL 7.83e-01 0.0549 0.199 0.949 cDC L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 1.80e-01 0.292 0.217 0.949 cDC L2
ENSG00000166578 IQCD -492330 sc-eQTL 4.72e-01 -0.133 0.185 0.949 cDC L2
ENSG00000173064 HECTD4 346325 sc-eQTL 5.18e-01 0.129 0.2 0.949 cDC L2
ENSG00000179295 PTPN11 310413 sc-eQTL 5.61e-02 -0.391 0.203 0.949 cDC L2
ENSG00000186815 TPCN1 -492286 sc-eQTL 6.58e-01 -0.0716 0.162 0.949 cDC L2
ENSG00000198270 TMEM116 715579 sc-eQTL 1.68e-01 0.278 0.201 0.949 cDC L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 8.47e-01 0.0436 0.226 0.949 cDC L2
ENSG00000089009 RPL6 309926 sc-eQTL 7.27e-01 -0.0307 0.0879 0.949 intMono L2
ENSG00000089022 MAPKAPK5 886536 sc-eQTL 3.50e-01 0.193 0.206 0.949 intMono L2
ENSG00000089060 SLC8B1 -630729 sc-eQTL 8.08e-01 0.0521 0.214 0.949 intMono L2
ENSG00000089127 OAS1 -178019 sc-eQTL 6.73e-01 -0.0495 0.117 0.949 intMono L2
ENSG00000089169 RPH3A 158384 sc-eQTL 4.71e-02 0.389 0.195 0.949 intMono L2
ENSG00000089248 ERP29 715416 sc-eQTL 4.82e-02 -0.367 0.185 0.949 intMono L2
ENSG00000111275 ALDH2 961877 sc-eQTL 4.90e-01 -0.119 0.173 0.949 intMono L2
ENSG00000111300 NAA25 619968 sc-eQTL 8.39e-01 -0.0415 0.204 0.949 intMono L2
ENSG00000111331 OAS3 -209680 sc-eQTL 4.06e-02 -0.309 0.15 0.949 intMono L2
ENSG00000111335 OAS2 -249631 sc-eQTL 5.02e-01 -0.1 0.149 0.949 intMono L2
ENSG00000123064 DDX54 -456715 sc-eQTL 7.17e-01 -0.0686 0.189 0.949 intMono L2
ENSG00000135148 TRAFD1 603226 sc-eQTL 3.04e-02 -0.379 0.174 0.949 intMono L2
ENSG00000139405 RITA1 -456762 sc-eQTL 7.75e-01 0.0603 0.21 0.949 intMono L2
ENSG00000139410 SDSL -693616 sc-eQTL 7.09e-01 -0.0768 0.206 0.949 intMono L2
ENSG00000151176 PLBD2 -629802 sc-eQTL 8.91e-01 -0.026 0.19 0.949 intMono L2
ENSG00000173064 HECTD4 346325 sc-eQTL 3.23e-01 0.182 0.184 0.949 intMono L2
ENSG00000179295 PTPN11 310413 sc-eQTL 6.49e-01 0.0851 0.187 0.949 intMono L2
ENSG00000186815 TPCN1 -492286 sc-eQTL 7.84e-01 -0.046 0.168 0.949 intMono L2
ENSG00000198270 TMEM116 715579 sc-eQTL 7.88e-01 -0.0535 0.199 0.949 intMono L2
ENSG00000234608 MAPKAPK5-AS1 885862 sc-eQTL 6.39e-01 -0.103 0.218 0.949 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 886536 eQTL 0.00327 -0.0987 0.0335 0.0 0.0 0.0545
ENSG00000111275 ALDH2 961877 eQTL 0.0341 -0.0799 0.0376 0.0 0.0 0.0545
ENSG00000111344 RASAL1 -407475 eQTL 0.0411 -0.178 0.0869 0.0 0.0 0.0545
ENSG00000139405 RITA1 -456762 eQTL 0.00669 0.118 0.0435 0.0 0.0 0.0545
ENSG00000173064 HECTD4 346325 eQTL 0.00489 0.0903 0.032 0.0 0.0 0.0545

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 886536 2.67e-07 1.27e-07 5.49e-08 1.83e-07 9.8e-08 9.48e-08 1.6e-07 5.66e-08 1.45e-07 6.08e-08 1.57e-07 1.05e-07 1.59e-07 7.37e-08 6.25e-08 7.23e-08 4.01e-08 1.4e-07 6.32e-08 4.89e-08 1.26e-07 1.26e-07 1.44e-07 2.87e-08 1.63e-07 1.26e-07 1.13e-07 9.92e-08 1.23e-07 9.49e-08 1.02e-07 2.93e-08 3.43e-08 8.56e-08 4.84e-08 3.28e-08 5.22e-08 8.61e-08 6.71e-08 4.19e-08 5.34e-08 1.46e-07 5.21e-08 1.3e-08 3.4e-08 1.87e-08 1.2e-07 1.89e-09 5e-08
ENSG00000123064 \N -456715 8.43e-07 5.67e-07 1.27e-07 3.87e-07 1.09e-07 2.12e-07 5.65e-07 1.62e-07 5.02e-07 2.62e-07 7.32e-07 4.03e-07 8.16e-07 1.49e-07 2.77e-07 2.89e-07 3.52e-07 4.11e-07 2.6e-07 1.76e-07 2.3e-07 4.11e-07 3.77e-07 2.19e-07 7.94e-07 2.6e-07 3.1e-07 2.69e-07 4.06e-07 6.27e-07 3.1e-07 6.7e-08 5.78e-08 1.56e-07 3.34e-07 1.21e-07 1.06e-07 1.09e-07 6.49e-08 2.17e-08 1.09e-07 5.44e-07 3.55e-08 1.55e-08 1.61e-07 1.33e-08 1.29e-07 1.77e-08 6.15e-08
ENSG00000173064 HECTD4 346325 1.25e-06 9.36e-07 2.95e-07 3.6e-07 2.69e-07 4.11e-07 9.87e-07 3.28e-07 1.13e-06 3.85e-07 1.26e-06 5.57e-07 1.55e-06 2.54e-07 4.28e-07 6.72e-07 7.73e-07 5.72e-07 4.95e-07 5.62e-07 3.61e-07 9.58e-07 7.16e-07 5.84e-07 1.79e-06 3.02e-07 6.13e-07 5.61e-07 9.15e-07 1.04e-06 4.9e-07 5.02e-08 2.33e-07 4.54e-07 3.81e-07 3.92e-07 3.79e-07 1.45e-07 1.83e-07 9.03e-08 3.01e-07 1.22e-06 5.65e-08 2.65e-08 1.85e-07 7.5e-08 1.86e-07 8.58e-08 8.28e-08
ENSG00000229186 \N 829501 2.8e-07 1.35e-07 5.72e-08 1.89e-07 1.03e-07 8.45e-08 1.73e-07 5.85e-08 1.5e-07 6.75e-08 1.73e-07 1.15e-07 1.71e-07 7.64e-08 5.82e-08 7.97e-08 4.18e-08 1.51e-07 6.92e-08 5.04e-08 1.25e-07 1.26e-07 1.5e-07 2.68e-08 1.68e-07 1.22e-07 1.12e-07 1.04e-07 1.24e-07 1.03e-07 1.08e-07 3.59e-08 3.68e-08 8.7e-08 3.81e-08 2.69e-08 5.61e-08 8.68e-08 6.58e-08 3.6e-08 5.42e-08 1.46e-07 5.27e-08 1.18e-08 3.41e-08 1.77e-08 9.96e-08 1.91e-09 4.8e-08