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Genes within 1Mb (chr12:112709264:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 290426 sc-eQTL 8.36e-01 -0.0235 0.114 0.059 PB L2
ENSG00000089022 MAPKAPK5 867036 sc-eQTL 2.34e-01 -0.294 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -650229 sc-eQTL 7.93e-01 -0.062 0.235 0.059 PB L2
ENSG00000089127 OAS1 -197519 sc-eQTL 8.16e-02 0.291 0.166 0.059 PB L2
ENSG00000089248 ERP29 695916 sc-eQTL 5.57e-01 -0.0778 0.132 0.059 PB L2
ENSG00000111275 ALDH2 942377 sc-eQTL 3.37e-01 0.223 0.231 0.059 PB L2
ENSG00000111300 NAA25 600468 sc-eQTL 7.28e-01 -0.086 0.246 0.059 PB L2
ENSG00000111331 OAS3 -229180 sc-eQTL 4.86e-01 0.138 0.198 0.059 PB L2
ENSG00000111335 OAS2 -269131 sc-eQTL 9.32e-01 0.0151 0.177 0.059 PB L2
ENSG00000123064 DDX54 -476215 sc-eQTL 3.09e-01 -0.242 0.237 0.059 PB L2
ENSG00000135144 DTX1 -347445 sc-eQTL 1.34e-01 -0.316 0.209 0.059 PB L2
ENSG00000135148 TRAFD1 583726 sc-eQTL 4.75e-01 -0.181 0.252 0.059 PB L2
ENSG00000139405 RITA1 -476262 sc-eQTL 9.76e-01 -0.00525 0.176 0.059 PB L2
ENSG00000151176 PLBD2 -649302 sc-eQTL 5.84e-01 0.123 0.224 0.059 PB L2
ENSG00000173064 HECTD4 326825 sc-eQTL 8.52e-02 -0.314 0.181 0.059 PB L2
ENSG00000179295 PTPN11 290913 sc-eQTL 8.85e-01 0.035 0.242 0.059 PB L2
ENSG00000186815 TPCN1 -511786 sc-eQTL 1.60e-01 0.324 0.229 0.059 PB L2
ENSG00000198270 TMEM116 696079 sc-eQTL 5.35e-01 0.157 0.252 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 866362 sc-eQTL 2.88e-01 0.222 0.208 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089060 SLC8B1 -650229 eQTL 0.0467 0.116 0.0582 0.0 0.0 0.0407
ENSG00000089248 ERP29 695916 eQTL 0.0131 -0.0795 0.032 0.00145 0.0 0.0407
ENSG00000111275 ALDH2 942377 pQTL 0.246 -0.0715 0.0616 0.00162 0.0 0.0441
ENSG00000111275 ALDH2 942377 eQTL 0.0394 0.0848 0.0411 0.0 0.0 0.0407
ENSG00000173064 HECTD4 326825 eQTL 5.26e-09 0.203 0.0345 0.0 0.0 0.0407
ENSG00000186710 CFAP73 -440594 eQTL 0.0472 0.157 0.0792 0.0 0.0 0.0407
ENSG00000234608 MAPKAPK5-AS1 866362 eQTL 0.0206 -0.0743 0.032 0.0 0.0 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000173064 HECTD4 326825 1.01e-06 6.78e-07 1.23e-07 4.27e-07 9.29e-08 2.16e-07 6.19e-07 1.21e-07 5.06e-07 2.57e-07 8.15e-07 3.91e-07 9.97e-07 1.6e-07 2.81e-07 2.83e-07 4.54e-07 4.22e-07 2.65e-07 1.71e-07 2.05e-07 4.31e-07 4.08e-07 2.39e-07 9.71e-07 2.49e-07 2.62e-07 2.71e-07 4.33e-07 8.36e-07 3.77e-07 6.84e-08 5.63e-08 1.52e-07 3.4e-07 1.28e-07 1.01e-07 9.71e-08 7.72e-08 2.24e-08 8.61e-08 7.53e-07 4.24e-08 1.06e-08 1.26e-07 1.84e-08 1.03e-07 1.22e-08 5.96e-08