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Genes within 1Mb (chr12:112687444:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 268606 sc-eQTL 5.27e-01 -0.0824 0.13 0.052 PB L2
ENSG00000089022 MAPKAPK5 845216 sc-eQTL 1.45e-01 -0.411 0.28 0.052 PB L2
ENSG00000089060 SLC8B1 -672049 sc-eQTL 3.62e-01 -0.246 0.268 0.052 PB L2
ENSG00000089127 OAS1 -219339 sc-eQTL 9.63e-01 0.00886 0.192 0.052 PB L2
ENSG00000089248 ERP29 674096 sc-eQTL 1.63e-01 0.211 0.15 0.052 PB L2
ENSG00000111275 ALDH2 920557 sc-eQTL 1.87e-01 0.349 0.263 0.052 PB L2
ENSG00000111300 NAA25 578648 sc-eQTL 2.97e-01 -0.294 0.281 0.052 PB L2
ENSG00000111331 OAS3 -251000 sc-eQTL 9.24e-01 0.0217 0.227 0.052 PB L2
ENSG00000111335 OAS2 -290951 sc-eQTL 3.88e-01 0.175 0.202 0.052 PB L2
ENSG00000123064 DDX54 -498035 sc-eQTL 1.59e-01 0.383 0.27 0.052 PB L2
ENSG00000135144 DTX1 -369265 sc-eQTL 8.99e-02 0.409 0.239 0.052 PB L2
ENSG00000135148 TRAFD1 561906 sc-eQTL 3.55e-02 -0.603 0.283 0.052 PB L2
ENSG00000139405 RITA1 -498082 sc-eQTL 9.64e-02 0.333 0.199 0.052 PB L2
ENSG00000151176 PLBD2 -671122 sc-eQTL 5.66e-01 -0.148 0.257 0.052 PB L2
ENSG00000173064 HECTD4 305005 sc-eQTL 5.40e-01 -0.129 0.209 0.052 PB L2
ENSG00000179295 PTPN11 269093 sc-eQTL 5.39e-01 0.171 0.277 0.052 PB L2
ENSG00000186815 TPCN1 -533606 sc-eQTL 4.20e-01 0.214 0.264 0.052 PB L2
ENSG00000198270 TMEM116 674259 sc-eQTL 3.83e-02 0.593 0.283 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 844542 sc-eQTL 7.19e-01 0.086 0.239 0.052 PB L2
ENSG00000089009 RPL6 268606 sc-eQTL 1.27e-01 -0.164 0.107 0.051 cDC L2
ENSG00000089022 MAPKAPK5 845216 sc-eQTL 5.62e-01 -0.135 0.233 0.051 cDC L2
ENSG00000089060 SLC8B1 -672049 sc-eQTL 5.46e-01 0.14 0.232 0.051 cDC L2
ENSG00000089127 OAS1 -219339 sc-eQTL 1.51e-01 0.232 0.161 0.051 cDC L2
ENSG00000089169 RPH3A 117064 sc-eQTL 6.96e-01 0.077 0.197 0.051 cDC L2
ENSG00000089248 ERP29 674096 sc-eQTL 9.06e-01 0.0195 0.164 0.051 cDC L2
ENSG00000111275 ALDH2 920557 sc-eQTL 7.05e-01 0.0648 0.171 0.051 cDC L2
ENSG00000111300 NAA25 578648 sc-eQTL 2.23e-01 0.267 0.219 0.051 cDC L2
ENSG00000111331 OAS3 -251000 sc-eQTL 2.80e-01 0.174 0.161 0.051 cDC L2
ENSG00000111335 OAS2 -290951 sc-eQTL 5.36e-01 -0.113 0.183 0.051 cDC L2
ENSG00000123064 DDX54 -498035 sc-eQTL 6.50e-01 0.101 0.222 0.051 cDC L2
ENSG00000135094 SDS -738857 sc-eQTL 2.36e-01 0.23 0.194 0.051 cDC L2
ENSG00000135148 TRAFD1 561906 sc-eQTL 7.74e-01 -0.0638 0.222 0.051 cDC L2
ENSG00000139405 RITA1 -498082 sc-eQTL 4.59e-01 -0.162 0.218 0.051 cDC L2
ENSG00000139410 SDSL -734936 sc-eQTL 9.56e-01 -0.0115 0.207 0.051 cDC L2
ENSG00000151176 PLBD2 -671122 sc-eQTL 5.31e-02 -0.436 0.224 0.051 cDC L2
ENSG00000166578 IQCD -533650 sc-eQTL 6.50e-01 0.0874 0.192 0.051 cDC L2
ENSG00000173064 HECTD4 305005 sc-eQTL 9.81e-01 -0.00485 0.208 0.051 cDC L2
ENSG00000179295 PTPN11 269093 sc-eQTL 6.11e-01 0.109 0.213 0.051 cDC L2
ENSG00000186815 TPCN1 -533606 sc-eQTL 7.18e-01 -0.0609 0.168 0.051 cDC L2
ENSG00000198270 TMEM116 674259 sc-eQTL 1.51e-01 -0.301 0.209 0.051 cDC L2
ENSG00000234608 MAPKAPK5-AS1 844542 sc-eQTL 6.58e-01 0.104 0.234 0.051 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 845216 eQTL 9.42e-05 0.101 0.0257 0.0 0.0 0.0908
ENSG00000089127 OAS1 -219339 eQTL 0.0135 -0.0453 0.0183 0.00139 0.0 0.0908
ENSG00000111275 ALDH2 920557 pQTL 0.01 0.118 0.0457 0.0 0.0 0.0871
ENSG00000135094 SDS -738857 eQTL 0.0474 0.101 0.0511 0.0 0.0 0.0908
ENSG00000139410 SDSL -734936 eQTL 0.201 0.0484 0.0378 0.00116 0.0 0.0908
ENSG00000166578 IQCD -533650 eQTL 0.0106 0.16 0.0627 0.00229 0.0 0.0908
ENSG00000173064 HECTD4 305005 eQTL 1.05e-06 -0.12 0.0244 0.0 0.0 0.0908
ENSG00000198270 TMEM116 674259 eQTL 0.000526 -0.104 0.0299 0.0 0.0 0.0908

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 845216 2.74e-07 1.25e-07 3.71e-08 1.81e-07 9.21e-08 9.8e-08 1.49e-07 5.19e-08 1.41e-07 4.74e-08 1.6e-07 8.36e-08 1.41e-07 6.56e-08 5.99e-08 7.37e-08 3.9e-08 1.26e-07 5.82e-08 4.04e-08 1.04e-07 1.23e-07 1.39e-07 3.42e-08 1.37e-07 1.16e-07 1.08e-07 9.57e-08 1.08e-07 1.1e-07 9.64e-08 3.1e-08 3.66e-08 8.44e-08 7.51e-08 3.94e-08 4.99e-08 9.25e-08 6.54e-08 4.19e-08 5.28e-08 1.35e-07 3.99e-08 1.53e-08 4.25e-08 1.83e-08 1.19e-07 3.8e-09 4.88e-08
ENSG00000166578 IQCD -533650 3.92e-07 1.78e-07 6.41e-08 2.48e-07 1.05e-07 1.13e-07 2.86e-07 5.82e-08 1.75e-07 1.11e-07 1.86e-07 1.46e-07 2.55e-07 8.54e-08 6.27e-08 9.6e-08 4.25e-08 2.21e-07 7.76e-08 6.73e-08 1.23e-07 1.7e-07 1.81e-07 4.15e-08 2.48e-07 1.43e-07 1.29e-07 1.47e-07 1.36e-07 1.38e-07 1.27e-07 5.38e-08 4.87e-08 1.01e-07 7.55e-08 3.36e-08 5.76e-08 6.98e-08 5.8e-08 8.16e-08 5.19e-08 1.62e-07 4.7e-08 7.18e-09 5.49e-08 9.86e-09 7.66e-08 0.0 4.47e-08
ENSG00000173064 HECTD4 305005 1.27e-06 9.27e-07 1.76e-07 5.11e-07 1.07e-07 4.23e-07 9.74e-07 2.62e-07 8.39e-07 2.77e-07 1.11e-06 5.55e-07 1.34e-06 2.54e-07 4.01e-07 4.29e-07 6.44e-07 5.27e-07 3.66e-07 4.12e-07 2.54e-07 5.66e-07 6.18e-07 4.38e-07 1.69e-06 2.4e-07 5.05e-07 4.94e-07 8e-07 9.3e-07 4.48e-07 5.02e-08 1.79e-07 3.51e-07 3.81e-07 2.91e-07 3.26e-07 1.39e-07 1.34e-07 8.82e-08 2.57e-07 1.05e-06 5.91e-08 1.94e-08 1.61e-07 7.64e-08 1.82e-07 8.35e-08 8e-08