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Genes within 1Mb (chr12:112686965:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 268127 sc-eQTL 5.27e-01 0.0824 0.13 0.948 PB L2
ENSG00000089022 MAPKAPK5 844737 sc-eQTL 1.45e-01 0.411 0.28 0.948 PB L2
ENSG00000089060 SLC8B1 -672528 sc-eQTL 3.62e-01 0.246 0.268 0.948 PB L2
ENSG00000089127 OAS1 -219818 sc-eQTL 9.63e-01 -0.00886 0.192 0.948 PB L2
ENSG00000089248 ERP29 673617 sc-eQTL 1.63e-01 -0.211 0.15 0.948 PB L2
ENSG00000111275 ALDH2 920078 sc-eQTL 1.87e-01 -0.349 0.263 0.948 PB L2
ENSG00000111300 NAA25 578169 sc-eQTL 2.97e-01 0.294 0.281 0.948 PB L2
ENSG00000111331 OAS3 -251479 sc-eQTL 9.24e-01 -0.0217 0.227 0.948 PB L2
ENSG00000111335 OAS2 -291430 sc-eQTL 3.88e-01 -0.175 0.202 0.948 PB L2
ENSG00000123064 DDX54 -498514 sc-eQTL 1.59e-01 -0.383 0.27 0.948 PB L2
ENSG00000135144 DTX1 -369744 sc-eQTL 8.99e-02 -0.409 0.239 0.948 PB L2
ENSG00000135148 TRAFD1 561427 sc-eQTL 3.55e-02 0.603 0.283 0.948 PB L2
ENSG00000139405 RITA1 -498561 sc-eQTL 9.64e-02 -0.333 0.199 0.948 PB L2
ENSG00000151176 PLBD2 -671601 sc-eQTL 5.66e-01 0.148 0.257 0.948 PB L2
ENSG00000173064 HECTD4 304526 sc-eQTL 5.40e-01 0.129 0.209 0.948 PB L2
ENSG00000179295 PTPN11 268614 sc-eQTL 5.39e-01 -0.171 0.277 0.948 PB L2
ENSG00000186815 TPCN1 -534085 sc-eQTL 4.20e-01 -0.214 0.264 0.948 PB L2
ENSG00000198270 TMEM116 673780 sc-eQTL 3.83e-02 -0.593 0.283 0.948 PB L2
ENSG00000234608 MAPKAPK5-AS1 844063 sc-eQTL 7.19e-01 -0.086 0.239 0.948 PB L2
ENSG00000089009 RPL6 268127 sc-eQTL 1.27e-01 0.164 0.107 0.949 cDC L2
ENSG00000089022 MAPKAPK5 844737 sc-eQTL 5.62e-01 0.135 0.233 0.949 cDC L2
ENSG00000089060 SLC8B1 -672528 sc-eQTL 5.46e-01 -0.14 0.232 0.949 cDC L2
ENSG00000089127 OAS1 -219818 sc-eQTL 1.51e-01 -0.232 0.161 0.949 cDC L2
ENSG00000089169 RPH3A 116585 sc-eQTL 6.96e-01 -0.077 0.197 0.949 cDC L2
ENSG00000089248 ERP29 673617 sc-eQTL 9.06e-01 -0.0195 0.164 0.949 cDC L2
ENSG00000111275 ALDH2 920078 sc-eQTL 7.05e-01 -0.0648 0.171 0.949 cDC L2
ENSG00000111300 NAA25 578169 sc-eQTL 2.23e-01 -0.267 0.219 0.949 cDC L2
ENSG00000111331 OAS3 -251479 sc-eQTL 2.80e-01 -0.174 0.161 0.949 cDC L2
ENSG00000111335 OAS2 -291430 sc-eQTL 5.36e-01 0.113 0.183 0.949 cDC L2
ENSG00000123064 DDX54 -498514 sc-eQTL 6.50e-01 -0.101 0.222 0.949 cDC L2
ENSG00000135094 SDS -739336 sc-eQTL 2.36e-01 -0.23 0.194 0.949 cDC L2
ENSG00000135148 TRAFD1 561427 sc-eQTL 7.74e-01 0.0638 0.222 0.949 cDC L2
ENSG00000139405 RITA1 -498561 sc-eQTL 4.59e-01 0.162 0.218 0.949 cDC L2
ENSG00000139410 SDSL -735415 sc-eQTL 9.56e-01 0.0115 0.207 0.949 cDC L2
ENSG00000151176 PLBD2 -671601 sc-eQTL 5.31e-02 0.436 0.224 0.949 cDC L2
ENSG00000166578 IQCD -534129 sc-eQTL 6.50e-01 -0.0874 0.192 0.949 cDC L2
ENSG00000173064 HECTD4 304526 sc-eQTL 9.81e-01 0.00485 0.208 0.949 cDC L2
ENSG00000179295 PTPN11 268614 sc-eQTL 6.11e-01 -0.109 0.213 0.949 cDC L2
ENSG00000186815 TPCN1 -534085 sc-eQTL 7.18e-01 0.0609 0.168 0.949 cDC L2
ENSG00000198270 TMEM116 673780 sc-eQTL 1.51e-01 0.301 0.209 0.949 cDC L2
ENSG00000234608 MAPKAPK5-AS1 844063 sc-eQTL 6.58e-01 -0.104 0.234 0.949 cDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 844737 eQTL 8.81e-05 -0.101 0.0257 0.0 0.0 0.0908
ENSG00000089127 OAS1 -219818 eQTL 0.0105 0.0469 0.0183 0.00161 0.0 0.0908
ENSG00000111275 ALDH2 920078 pQTL 0.00966 -0.118 0.0457 0.0 0.0 0.0871
ENSG00000135094 SDS -739336 eQTL 0.0399 -0.105 0.0511 0.0 0.0 0.0908
ENSG00000166578 IQCD -534129 eQTL 0.0104 -0.161 0.0627 0.00231 0.0 0.0908
ENSG00000173064 HECTD4 304526 eQTL 8.96e-07 0.121 0.0244 0.0 0.0 0.0908
ENSG00000198270 TMEM116 673780 eQTL 0.000518 0.104 0.0299 0.0 0.0 0.0908

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 844737 2.64e-07 1.16e-07 3.59e-08 1.84e-07 8.92e-08 9.57e-08 1.38e-07 5.19e-08 1.41e-07 4.4e-08 1.56e-07 7.88e-08 1.33e-07 6.21e-08 5.53e-08 7.5e-08 3.88e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.27e-07 1.26e-07 4.16e-08 1.33e-07 1.19e-07 1.12e-07 9.15e-08 1.02e-07 1.12e-07 9.91e-08 4.22e-08 2.92e-08 8.65e-08 8.87e-08 3.96e-08 5.05e-08 9.6e-08 6.78e-08 3.55e-08 4.57e-08 1.35e-07 4.19e-08 1.76e-08 6.92e-08 1.69e-08 1.23e-07 3.92e-09 4.73e-08
ENSG00000166578 IQCD -534129 3.07e-07 1.76e-07 5.91e-08 2.54e-07 1.03e-07 8.45e-08 2.1e-07 5.89e-08 1.54e-07 8.53e-08 1.76e-07 1.15e-07 2.29e-07 8e-08 5.69e-08 7.98e-08 4.63e-08 1.72e-07 7.16e-08 5.48e-08 1.18e-07 1.47e-07 1.64e-07 3.51e-08 2.17e-07 1.26e-07 1.2e-07 1.17e-07 1.34e-07 1.17e-07 1.26e-07 3.84e-08 3.21e-08 9.08e-08 4.41e-08 2.68e-08 5.45e-08 8.37e-08 5.59e-08 6.67e-08 5.59e-08 1.59e-07 3.55e-08 1.08e-08 2.64e-08 1.71e-08 8.46e-08 2.23e-09 4.69e-08
ENSG00000173064 HECTD4 304526 1.25e-06 9.28e-07 1.76e-07 7.96e-07 1.11e-07 3.2e-07 7.1e-07 2.84e-07 8.39e-07 2.85e-07 1.16e-06 5.08e-07 1.35e-06 2.05e-07 4.21e-07 3.96e-07 7.43e-07 4.72e-07 3.74e-07 3.93e-07 2.72e-07 5.66e-07 5.77e-07 4.09e-07 1.59e-06 2.64e-07 5.04e-07 4.75e-07 5.78e-07 9.3e-07 5.23e-07 4.4e-08 9.26e-08 3.17e-07 3.66e-07 2.89e-07 4.77e-07 1.12e-07 1.5e-07 7.66e-08 1.16e-07 9.59e-07 6.58e-08 1.95e-08 1.96e-07 4.43e-08 1.41e-07 8.81e-08 5.25e-08