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Genes within 1Mb (chr12:112680967:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 262129 sc-eQTL 4.22e-01 0.0934 0.116 0.944 PB L2
ENSG00000089022 MAPKAPK5 838739 sc-eQTL 1.25e-01 0.386 0.25 0.944 PB L2
ENSG00000089060 SLC8B1 -678526 sc-eQTL 4.11e-01 0.198 0.24 0.944 PB L2
ENSG00000089127 OAS1 -225816 sc-eQTL 9.12e-01 -0.0189 0.172 0.944 PB L2
ENSG00000089234 BRAP 995011 sc-eQTL 9.42e-01 0.0161 0.222 0.944 PB L2
ENSG00000089248 ERP29 667619 sc-eQTL 1.15e-01 -0.212 0.134 0.944 PB L2
ENSG00000111271 ACAD10 994911 sc-eQTL 7.11e-01 0.0899 0.242 0.944 PB L2
ENSG00000111275 ALDH2 914080 sc-eQTL 3.80e-01 -0.208 0.236 0.944 PB L2
ENSG00000111300 NAA25 572171 sc-eQTL 2.18e-01 0.31 0.25 0.944 PB L2
ENSG00000111331 OAS3 -257477 sc-eQTL 9.89e-01 -0.00272 0.203 0.944 PB L2
ENSG00000111335 OAS2 -297428 sc-eQTL 4.17e-01 -0.147 0.18 0.944 PB L2
ENSG00000123064 DDX54 -504512 sc-eQTL 3.50e-01 -0.227 0.242 0.944 PB L2
ENSG00000135144 DTX1 -375742 sc-eQTL 2.21e-01 -0.264 0.215 0.944 PB L2
ENSG00000135148 TRAFD1 555429 sc-eQTL 1.04e-01 0.418 0.255 0.944 PB L2
ENSG00000139405 RITA1 -504559 sc-eQTL 1.74e-01 -0.244 0.178 0.944 PB L2
ENSG00000151176 PLBD2 -677599 sc-eQTL 4.77e-01 0.163 0.229 0.944 PB L2
ENSG00000173064 HECTD4 298528 sc-eQTL 3.38e-01 0.179 0.186 0.944 PB L2
ENSG00000179295 PTPN11 262616 sc-eQTL 7.80e-01 -0.0693 0.248 0.944 PB L2
ENSG00000186815 TPCN1 -540083 sc-eQTL 5.56e-01 -0.139 0.236 0.944 PB L2
ENSG00000198270 TMEM116 667782 sc-eQTL 7.53e-02 -0.456 0.254 0.944 PB L2
ENSG00000234608 MAPKAPK5-AS1 838065 sc-eQTL 7.28e-01 -0.0742 0.213 0.944 PB L2
ENSG00000089009 RPL6 262129 sc-eQTL 8.73e-02 0.17 0.0992 0.946 cDC L2
ENSG00000089022 MAPKAPK5 838739 sc-eQTL 4.38e-01 0.168 0.216 0.946 cDC L2
ENSG00000089060 SLC8B1 -678526 sc-eQTL 6.95e-01 -0.0845 0.216 0.946 cDC L2
ENSG00000089127 OAS1 -225816 sc-eQTL 1.43e-01 -0.22 0.149 0.946 cDC L2
ENSG00000089169 RPH3A 110587 sc-eQTL 8.08e-01 -0.0446 0.183 0.946 cDC L2
ENSG00000089234 BRAP 995011 sc-eQTL 7.56e-02 0.391 0.219 0.946 cDC L2
ENSG00000089248 ERP29 667619 sc-eQTL 8.38e-01 -0.0313 0.153 0.946 cDC L2
ENSG00000111271 ACAD10 994911 sc-eQTL 4.30e-01 -0.171 0.216 0.946 cDC L2
ENSG00000111275 ALDH2 914080 sc-eQTL 6.88e-01 -0.0639 0.159 0.946 cDC L2
ENSG00000111300 NAA25 572171 sc-eQTL 1.39e-01 -0.302 0.203 0.946 cDC L2
ENSG00000111331 OAS3 -257477 sc-eQTL 1.71e-01 -0.205 0.149 0.946 cDC L2
ENSG00000111335 OAS2 -297428 sc-eQTL 6.29e-01 0.0824 0.17 0.946 cDC L2
ENSG00000123064 DDX54 -504512 sc-eQTL 6.13e-01 -0.105 0.207 0.946 cDC L2
ENSG00000135094 SDS -745334 sc-eQTL 2.10e-01 -0.226 0.18 0.946 cDC L2
ENSG00000135148 TRAFD1 555429 sc-eQTL 8.49e-01 0.0394 0.206 0.946 cDC L2
ENSG00000139405 RITA1 -504559 sc-eQTL 5.55e-01 0.12 0.203 0.946 cDC L2
ENSG00000139410 SDSL -741413 sc-eQTL 9.71e-01 0.00696 0.192 0.946 cDC L2
ENSG00000151176 PLBD2 -677599 sc-eQTL 3.77e-02 0.435 0.208 0.946 cDC L2
ENSG00000166578 IQCD -540127 sc-eQTL 7.22e-01 -0.0638 0.179 0.946 cDC L2
ENSG00000173064 HECTD4 298528 sc-eQTL 9.87e-01 0.00312 0.193 0.946 cDC L2
ENSG00000179295 PTPN11 262616 sc-eQTL 5.71e-01 -0.112 0.198 0.946 cDC L2
ENSG00000186815 TPCN1 -540083 sc-eQTL 7.99e-01 0.0398 0.156 0.946 cDC L2
ENSG00000198270 TMEM116 667782 sc-eQTL 2.17e-01 0.241 0.194 0.946 cDC L2
ENSG00000234608 MAPKAPK5-AS1 838065 sc-eQTL 5.13e-01 -0.143 0.218 0.946 cDC L2
ENSG00000089009 RPL6 262129 sc-eQTL 6.32e-01 0.0563 0.117 0.949 pDC L2
ENSG00000089022 MAPKAPK5 838739 sc-eQTL 9.79e-01 -0.00626 0.24 0.949 pDC L2
ENSG00000089060 SLC8B1 -678526 sc-eQTL 5.06e-01 -0.153 0.229 0.949 pDC L2
ENSG00000089127 OAS1 -225816 sc-eQTL 1.01e-01 -0.245 0.149 0.949 pDC L2
ENSG00000089169 RPH3A 110587 sc-eQTL 6.82e-01 -0.0704 0.172 0.949 pDC L2
ENSG00000089234 BRAP 995011 sc-eQTL 4.25e-01 0.184 0.23 0.949 pDC L2
ENSG00000089248 ERP29 667619 sc-eQTL 4.22e-01 0.113 0.141 0.949 pDC L2
ENSG00000111271 ACAD10 994911 sc-eQTL 2.90e-01 -0.251 0.237 0.949 pDC L2
ENSG00000111275 ALDH2 914080 sc-eQTL 2.27e-01 -0.206 0.17 0.949 pDC L2
ENSG00000111300 NAA25 572171 sc-eQTL 6.12e-01 0.106 0.209 0.949 pDC L2
ENSG00000111331 OAS3 -257477 sc-eQTL 4.94e-01 0.124 0.18 0.949 pDC L2
ENSG00000111335 OAS2 -297428 sc-eQTL 5.91e-01 0.104 0.193 0.949 pDC L2
ENSG00000123064 DDX54 -504512 sc-eQTL 7.80e-01 0.0627 0.224 0.949 pDC L2
ENSG00000135094 SDS -745334 sc-eQTL 4.48e-01 0.123 0.162 0.949 pDC L2
ENSG00000135148 TRAFD1 555429 sc-eQTL 6.44e-01 0.103 0.222 0.949 pDC L2
ENSG00000139405 RITA1 -504559 sc-eQTL 8.75e-02 -0.384 0.223 0.949 pDC L2
ENSG00000139410 SDSL -741413 sc-eQTL 6.41e-01 -0.103 0.221 0.949 pDC L2
ENSG00000151176 PLBD2 -677599 sc-eQTL 3.47e-01 -0.218 0.231 0.949 pDC L2
ENSG00000166578 IQCD -540127 sc-eQTL 3.80e-01 0.156 0.177 0.949 pDC L2
ENSG00000173064 HECTD4 298528 sc-eQTL 9.55e-01 0.0107 0.188 0.949 pDC L2
ENSG00000179295 PTPN11 262616 sc-eQTL 9.99e-01 0.000288 0.216 0.949 pDC L2
ENSG00000186815 TPCN1 -540083 sc-eQTL 9.16e-01 -0.0221 0.21 0.949 pDC L2
ENSG00000198270 TMEM116 667782 sc-eQTL 4.44e-01 0.165 0.215 0.949 pDC L2
ENSG00000234608 MAPKAPK5-AS1 838065 sc-eQTL 8.88e-01 0.0305 0.216 0.949 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 838739 eQTL 3.28e-05 -0.105 0.0251 0.0 0.0 0.0932
ENSG00000089127 OAS1 -225816 eQTL 0.00534 0.0499 0.0179 0.00225 0.0 0.0932
ENSG00000111275 ALDH2 914080 pQTL 0.00591 -0.123 0.0446 0.0 0.0 0.0896
ENSG00000139405 RITA1 -504559 eQTL 0.0335 0.0697 0.0327 0.0 0.0 0.0932
ENSG00000166578 IQCD -540127 eQTL 0.0167 -0.147 0.0613 0.00182 0.0 0.0932
ENSG00000173064 HECTD4 298528 eQTL 1.14e-07 0.127 0.0238 0.0 0.0 0.0932
ENSG00000198270 TMEM116 667782 eQTL 4.73e-05 0.119 0.0292 0.0 0.0 0.0932

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 838739 3.14e-07 1.51e-07 6.04e-08 2.22e-07 9.8e-08 8.33e-08 2.16e-07 5.75e-08 1.54e-07 7.6e-08 1.61e-07 1.31e-07 2.24e-07 8e-08 5.36e-08 8.08e-08 4.45e-08 1.64e-07 7.18e-08 5.07e-08 1.25e-07 1.42e-07 1.62e-07 3.4e-08 2.02e-07 1.22e-07 1.2e-07 1.06e-07 1.34e-07 1.17e-07 1.09e-07 2.99e-08 3.13e-08 8.89e-08 3.51e-08 2.68e-08 5.8e-08 8.89e-08 6.41e-08 3.99e-08 5.81e-08 1.59e-07 4.87e-08 1.22e-08 3.29e-08 1.8e-08 9.96e-08 1.96e-09 4.8e-08
ENSG00000166578 IQCD -540127 9.36e-07 6.09e-07 1.04e-07 3.95e-07 1.06e-07 2.12e-07 5.8e-07 1.01e-07 4.26e-07 2.39e-07 7.32e-07 4.24e-07 8.6e-07 1.48e-07 2.44e-07 2.45e-07 2.77e-07 3.74e-07 2.12e-07 1.39e-07 1.86e-07 3.87e-07 3.45e-07 1.63e-07 7.94e-07 2.46e-07 2.94e-07 2.57e-07 3.58e-07 6.27e-07 3.1e-07 8.32e-08 5.19e-08 1.39e-07 3.4e-07 8.32e-08 1.01e-07 7.53e-08 5.93e-08 3.05e-08 8.48e-08 5.79e-07 2.99e-08 1.75e-08 1.25e-07 1.84e-08 8.01e-08 1.18e-08 5.54e-08
ENSG00000173064 HECTD4 298528 1.6e-06 1.81e-06 2.91e-07 1.25e-06 3.67e-07 6.68e-07 1.26e-06 4.08e-07 1.74e-06 6.9e-07 1.97e-06 1.32e-06 2.63e-06 4.82e-07 3.96e-07 9.98e-07 9.81e-07 1.1e-06 6.75e-07 4.38e-07 7.85e-07 1.95e-06 1.19e-06 6.31e-07 2.33e-06 7.38e-07 1.02e-06 8.14e-07 1.63e-06 1.32e-06 8.46e-07 3.03e-07 2.76e-07 5.89e-07 6.29e-07 5.32e-07 7.24e-07 3.27e-07 5.17e-07 2.42e-07 2.82e-07 2.14e-06 3.32e-07 6.55e-08 3.14e-07 1.98e-07 2.45e-07 1.27e-07 1.85e-07