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Genes within 1Mb (chr12:112653695:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 234857 sc-eQTL 9.74e-01 -0.00346 0.106 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 811467 sc-eQTL 4.81e-01 0.145 0.205 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -705798 sc-eQTL 3.89e-01 0.164 0.191 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -253088 sc-eQTL 1.30e-01 -0.259 0.17 0.05 CD4_CTL L2
ENSG00000089234 BRAP 967739 sc-eQTL 6.08e-01 -0.0937 0.183 0.05 CD4_CTL L2
ENSG00000089248 ERP29 640347 sc-eQTL 3.09e-01 -0.152 0.149 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 967639 sc-eQTL 6.97e-01 -0.0733 0.188 0.05 CD4_CTL L2
ENSG00000111300 NAA25 544899 sc-eQTL 6.73e-01 0.0843 0.2 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -284749 sc-eQTL 3.31e-01 0.187 0.191 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -324700 sc-eQTL 7.53e-01 -0.0591 0.188 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -531784 sc-eQTL 1.18e-02 0.483 0.19 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -403014 sc-eQTL 2.60e-01 -0.156 0.138 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 528157 sc-eQTL 7.19e-01 0.0722 0.201 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -531831 sc-eQTL 1.77e-01 -0.259 0.191 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -704871 sc-eQTL 9.74e-01 0.00642 0.197 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 271256 sc-eQTL 9.91e-01 -0.00189 0.17 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 235344 sc-eQTL 1.66e-01 -0.264 0.19 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -567355 sc-eQTL 8.86e-01 -0.026 0.18 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 640510 sc-eQTL 2.71e-01 -0.22 0.199 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 810793 sc-eQTL 3.49e-01 0.179 0.191 0.05 CD4_CTL L2
ENSG00000089009 RPL6 234857 sc-eQTL 2.40e-01 0.12 0.101 0.05 NK_HLA L2
ENSG00000089022 MAPKAPK5 811467 sc-eQTL 1.92e-01 0.266 0.203 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -705798 sc-eQTL 4.97e-01 0.132 0.194 0.05 NK_HLA L2
ENSG00000089127 OAS1 -253088 sc-eQTL 7.02e-01 -0.0657 0.172 0.05 NK_HLA L2
ENSG00000089234 BRAP 967739 sc-eQTL 1.32e-01 0.314 0.207 0.05 NK_HLA L2
ENSG00000089248 ERP29 640347 sc-eQTL 3.97e-01 -0.151 0.177 0.05 NK_HLA L2
ENSG00000111271 ACAD10 967639 sc-eQTL 5.69e-01 -0.113 0.197 0.05 NK_HLA L2
ENSG00000111300 NAA25 544899 sc-eQTL 7.42e-02 0.363 0.202 0.05 NK_HLA L2
ENSG00000111331 OAS3 -284749 sc-eQTL 2.20e-01 -0.219 0.178 0.05 NK_HLA L2
ENSG00000111335 OAS2 -324700 sc-eQTL 1.63e-02 -0.416 0.172 0.05 NK_HLA L2
ENSG00000123064 DDX54 -531784 sc-eQTL 6.52e-01 -0.0956 0.212 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 528157 sc-eQTL 4.09e-02 -0.4 0.195 0.05 NK_HLA L2
ENSG00000139405 RITA1 -531831 sc-eQTL 8.90e-01 0.0283 0.205 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -704871 sc-eQTL 1.50e-01 0.291 0.201 0.05 NK_HLA L2
ENSG00000173064 HECTD4 271256 sc-eQTL 7.42e-01 0.0605 0.183 0.05 NK_HLA L2
ENSG00000179295 PTPN11 235344 sc-eQTL 2.80e-01 0.208 0.192 0.05 NK_HLA L2
ENSG00000198270 TMEM116 640510 sc-eQTL 7.54e-01 0.06 0.191 0.05 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 810793 sc-eQTL 1.50e-01 -0.297 0.205 0.05 NK_HLA L2
ENSG00000089009 RPL6 234857 sc-eQTL 5.85e-01 -0.0592 0.108 0.052 gdT L2
ENSG00000089022 MAPKAPK5 811467 sc-eQTL 5.13e-01 0.152 0.231 0.052 gdT L2
ENSG00000089060 SLC8B1 -705798 sc-eQTL 8.37e-01 -0.0426 0.207 0.052 gdT L2
ENSG00000089127 OAS1 -253088 sc-eQTL 9.79e-01 -0.00508 0.196 0.052 gdT L2
ENSG00000089234 BRAP 967739 sc-eQTL 4.72e-01 -0.168 0.233 0.052 gdT L2
ENSG00000089248 ERP29 640347 sc-eQTL 5.12e-01 0.132 0.201 0.052 gdT L2
ENSG00000111271 ACAD10 967639 sc-eQTL 6.24e-01 0.1 0.204 0.052 gdT L2
ENSG00000111300 NAA25 544899 sc-eQTL 7.10e-01 -0.0878 0.236 0.052 gdT L2
ENSG00000111331 OAS3 -284749 sc-eQTL 5.23e-01 -0.141 0.22 0.052 gdT L2
ENSG00000111335 OAS2 -324700 sc-eQTL 7.49e-01 -0.0575 0.179 0.052 gdT L2
ENSG00000123064 DDX54 -531784 sc-eQTL 7.73e-01 -0.067 0.232 0.052 gdT L2
ENSG00000135144 DTX1 -403014 sc-eQTL 2.12e-01 0.229 0.182 0.052 gdT L2
ENSG00000135148 TRAFD1 528157 sc-eQTL 3.80e-01 -0.191 0.217 0.052 gdT L2
ENSG00000139405 RITA1 -531831 sc-eQTL 2.69e-01 -0.26 0.235 0.052 gdT L2
ENSG00000151176 PLBD2 -704871 sc-eQTL 5.32e-01 0.131 0.209 0.052 gdT L2
ENSG00000173064 HECTD4 271256 sc-eQTL 8.28e-01 -0.0454 0.209 0.052 gdT L2
ENSG00000179295 PTPN11 235344 sc-eQTL 2.88e-01 -0.23 0.215 0.052 gdT L2
ENSG00000186815 TPCN1 -567355 sc-eQTL 8.73e-01 0.0341 0.213 0.052 gdT L2
ENSG00000198270 TMEM116 640510 sc-eQTL 7.47e-01 0.0676 0.209 0.052 gdT L2
ENSG00000234608 MAPKAPK5-AS1 810793 sc-eQTL 2.07e-01 -0.277 0.219 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089127 OAS1 -253088 eQTL 0.0497 0.0486 0.0248 0.0 0.0 0.0456
ENSG00000089169 RPH3A 83315 eQTL 0.0134 0.172 0.0696 0.0 0.0 0.0456
ENSG00000173064 HECTD4 271256 eQTL 0.00138 -0.107 0.0332 0.0 0.0 0.0456

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina