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Genes within 1Mb (chr12:112652463:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 233625 sc-eQTL 9.74e-01 -0.00346 0.106 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 810235 sc-eQTL 4.81e-01 0.145 0.205 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -707030 sc-eQTL 3.89e-01 0.164 0.191 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -254320 sc-eQTL 1.30e-01 -0.259 0.17 0.05 CD4_CTL L2
ENSG00000089234 BRAP 966507 sc-eQTL 6.08e-01 -0.0937 0.183 0.05 CD4_CTL L2
ENSG00000089248 ERP29 639115 sc-eQTL 3.09e-01 -0.152 0.149 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 966407 sc-eQTL 6.97e-01 -0.0733 0.188 0.05 CD4_CTL L2
ENSG00000111300 NAA25 543667 sc-eQTL 6.73e-01 0.0843 0.2 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -285981 sc-eQTL 3.31e-01 0.187 0.191 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -325932 sc-eQTL 7.53e-01 -0.0591 0.188 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -533016 sc-eQTL 1.18e-02 0.483 0.19 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -404246 sc-eQTL 2.60e-01 -0.156 0.138 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 526925 sc-eQTL 7.19e-01 0.0722 0.201 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -533063 sc-eQTL 1.77e-01 -0.259 0.191 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -706103 sc-eQTL 9.74e-01 0.00642 0.197 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 270024 sc-eQTL 9.91e-01 -0.00189 0.17 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 234112 sc-eQTL 1.66e-01 -0.264 0.19 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -568587 sc-eQTL 8.86e-01 -0.026 0.18 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 639278 sc-eQTL 2.71e-01 -0.22 0.199 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 809561 sc-eQTL 3.49e-01 0.179 0.191 0.05 CD4_CTL L2
ENSG00000089009 RPL6 233625 sc-eQTL 2.40e-01 0.12 0.101 0.05 NK_HLA L2
ENSG00000089022 MAPKAPK5 810235 sc-eQTL 1.92e-01 0.266 0.203 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -707030 sc-eQTL 4.97e-01 0.132 0.194 0.05 NK_HLA L2
ENSG00000089127 OAS1 -254320 sc-eQTL 7.02e-01 -0.0657 0.172 0.05 NK_HLA L2
ENSG00000089234 BRAP 966507 sc-eQTL 1.32e-01 0.314 0.207 0.05 NK_HLA L2
ENSG00000089248 ERP29 639115 sc-eQTL 3.97e-01 -0.151 0.177 0.05 NK_HLA L2
ENSG00000111271 ACAD10 966407 sc-eQTL 5.69e-01 -0.113 0.197 0.05 NK_HLA L2
ENSG00000111300 NAA25 543667 sc-eQTL 7.42e-02 0.363 0.202 0.05 NK_HLA L2
ENSG00000111331 OAS3 -285981 sc-eQTL 2.20e-01 -0.219 0.178 0.05 NK_HLA L2
ENSG00000111335 OAS2 -325932 sc-eQTL 1.63e-02 -0.416 0.172 0.05 NK_HLA L2
ENSG00000123064 DDX54 -533016 sc-eQTL 6.52e-01 -0.0956 0.212 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 526925 sc-eQTL 4.09e-02 -0.4 0.195 0.05 NK_HLA L2
ENSG00000139405 RITA1 -533063 sc-eQTL 8.90e-01 0.0283 0.205 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -706103 sc-eQTL 1.50e-01 0.291 0.201 0.05 NK_HLA L2
ENSG00000173064 HECTD4 270024 sc-eQTL 7.42e-01 0.0605 0.183 0.05 NK_HLA L2
ENSG00000179295 PTPN11 234112 sc-eQTL 2.80e-01 0.208 0.192 0.05 NK_HLA L2
ENSG00000198270 TMEM116 639278 sc-eQTL 7.54e-01 0.06 0.191 0.05 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 809561 sc-eQTL 1.50e-01 -0.297 0.205 0.05 NK_HLA L2
ENSG00000089009 RPL6 233625 sc-eQTL 5.85e-01 -0.0592 0.108 0.052 gdT L2
ENSG00000089022 MAPKAPK5 810235 sc-eQTL 5.13e-01 0.152 0.231 0.052 gdT L2
ENSG00000089060 SLC8B1 -707030 sc-eQTL 8.37e-01 -0.0426 0.207 0.052 gdT L2
ENSG00000089127 OAS1 -254320 sc-eQTL 9.79e-01 -0.00508 0.196 0.052 gdT L2
ENSG00000089234 BRAP 966507 sc-eQTL 4.72e-01 -0.168 0.233 0.052 gdT L2
ENSG00000089248 ERP29 639115 sc-eQTL 5.12e-01 0.132 0.201 0.052 gdT L2
ENSG00000111271 ACAD10 966407 sc-eQTL 6.24e-01 0.1 0.204 0.052 gdT L2
ENSG00000111300 NAA25 543667 sc-eQTL 7.10e-01 -0.0878 0.236 0.052 gdT L2
ENSG00000111331 OAS3 -285981 sc-eQTL 5.23e-01 -0.141 0.22 0.052 gdT L2
ENSG00000111335 OAS2 -325932 sc-eQTL 7.49e-01 -0.0575 0.179 0.052 gdT L2
ENSG00000123064 DDX54 -533016 sc-eQTL 7.73e-01 -0.067 0.232 0.052 gdT L2
ENSG00000135144 DTX1 -404246 sc-eQTL 2.12e-01 0.229 0.182 0.052 gdT L2
ENSG00000135148 TRAFD1 526925 sc-eQTL 3.80e-01 -0.191 0.217 0.052 gdT L2
ENSG00000139405 RITA1 -533063 sc-eQTL 2.69e-01 -0.26 0.235 0.052 gdT L2
ENSG00000151176 PLBD2 -706103 sc-eQTL 5.32e-01 0.131 0.209 0.052 gdT L2
ENSG00000173064 HECTD4 270024 sc-eQTL 8.28e-01 -0.0454 0.209 0.052 gdT L2
ENSG00000179295 PTPN11 234112 sc-eQTL 2.88e-01 -0.23 0.215 0.052 gdT L2
ENSG00000186815 TPCN1 -568587 sc-eQTL 8.73e-01 0.0341 0.213 0.052 gdT L2
ENSG00000198270 TMEM116 639278 sc-eQTL 7.47e-01 0.0676 0.209 0.052 gdT L2
ENSG00000234608 MAPKAPK5-AS1 809561 sc-eQTL 2.07e-01 -0.277 0.219 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089127 OAS1 -254320 eQTL 0.0498 0.0486 0.0248 0.0 0.0 0.0456
ENSG00000089169 RPH3A 82083 eQTL 0.0134 0.172 0.0696 0.0 0.0 0.0456
ENSG00000173064 HECTD4 270024 eQTL 0.00138 -0.107 0.0332 0.0 0.0 0.0456

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina