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Genes within 1Mb (chr12:112644985:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 226147 sc-eQTL 6.59e-01 0.0499 0.113 0.059 PB L2
ENSG00000089022 MAPKAPK5 802757 sc-eQTL 4.89e-01 -0.17 0.245 0.059 PB L2
ENSG00000089060 SLC8B1 -714508 sc-eQTL 4.10e-01 -0.192 0.233 0.059 PB L2
ENSG00000089127 OAS1 -261798 sc-eQTL 7.28e-01 0.058 0.167 0.059 PB L2
ENSG00000089234 BRAP 959029 sc-eQTL 7.57e-01 0.0669 0.216 0.059 PB L2
ENSG00000089248 ERP29 631637 sc-eQTL 1.10e-01 -0.209 0.13 0.059 PB L2
ENSG00000111271 ACAD10 958929 sc-eQTL 9.01e-01 0.0293 0.235 0.059 PB L2
ENSG00000111275 ALDH2 878098 sc-eQTL 5.10e-01 0.152 0.23 0.059 PB L2
ENSG00000111300 NAA25 536189 sc-eQTL 2.76e-01 -0.266 0.243 0.059 PB L2
ENSG00000111331 OAS3 -293459 sc-eQTL 4.60e-01 -0.146 0.197 0.059 PB L2
ENSG00000111335 OAS2 -333410 sc-eQTL 8.34e-01 -0.0369 0.176 0.059 PB L2
ENSG00000123064 DDX54 -540494 sc-eQTL 3.59e-01 -0.217 0.235 0.059 PB L2
ENSG00000135144 DTX1 -411724 sc-eQTL 4.65e-02 -0.415 0.206 0.059 PB L2
ENSG00000135148 TRAFD1 519447 sc-eQTL 5.68e-01 -0.143 0.25 0.059 PB L2
ENSG00000139405 RITA1 -540541 sc-eQTL 9.14e-01 -0.0189 0.175 0.059 PB L2
ENSG00000151176 PLBD2 -713581 sc-eQTL 6.69e-01 0.0953 0.223 0.059 PB L2
ENSG00000173064 HECTD4 262546 sc-eQTL 2.38e-02 -0.407 0.178 0.059 PB L2
ENSG00000179295 PTPN11 226634 sc-eQTL 9.14e-01 -0.0261 0.241 0.059 PB L2
ENSG00000186815 TPCN1 -576065 sc-eQTL 2.46e-02 0.511 0.224 0.059 PB L2
ENSG00000198270 TMEM116 631800 sc-eQTL 5.92e-01 0.134 0.25 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 802083 sc-eQTL 8.56e-02 0.354 0.204 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111275 ALDH2 878098 pQTL 0.163 -0.0887 0.0635 0.00162 0.0 0.0423
ENSG00000173064 HECTD4 262546 eQTL 4.51e-12 0.247 0.0353 0.00141 0.0 0.0388

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000173064 HECTD4 262546 1.55e-06 1.84e-06 2.75e-07 1.44e-06 3.96e-07 6.74e-07 1.26e-06 4.2e-07 1.72e-06 7.22e-07 1.98e-06 8.75e-07 2.6e-06 4.99e-07 4.05e-07 1.02e-06 9.8e-07 1.09e-06 5.9e-07 4.38e-07 7.41e-07 1.87e-06 1.27e-06 5.65e-07 2.43e-06 7.81e-07 1.05e-06 8.48e-07 1.71e-06 1.32e-06 7.58e-07 2.89e-07 2.85e-07 5.89e-07 8.27e-07 4.39e-07 6.81e-07 3.63e-07 5.05e-07 3.02e-07 2.87e-07 2.17e-06 3.59e-07 1.32e-07 2.8e-07 3.24e-07 2.41e-07 3.73e-08 2.59e-07