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Genes within 1Mb (chr12:112631830:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 212992 sc-eQTL 9.74e-01 -0.00346 0.106 0.05 CD4_CTL L2
ENSG00000089022 MAPKAPK5 789602 sc-eQTL 4.81e-01 0.145 0.205 0.05 CD4_CTL L2
ENSG00000089060 SLC8B1 -727663 sc-eQTL 3.89e-01 0.164 0.191 0.05 CD4_CTL L2
ENSG00000089127 OAS1 -274953 sc-eQTL 1.30e-01 -0.259 0.17 0.05 CD4_CTL L2
ENSG00000089234 BRAP 945874 sc-eQTL 6.08e-01 -0.0937 0.183 0.05 CD4_CTL L2
ENSG00000089248 ERP29 618482 sc-eQTL 3.09e-01 -0.152 0.149 0.05 CD4_CTL L2
ENSG00000111271 ACAD10 945774 sc-eQTL 6.97e-01 -0.0733 0.188 0.05 CD4_CTL L2
ENSG00000111300 NAA25 523034 sc-eQTL 6.73e-01 0.0843 0.2 0.05 CD4_CTL L2
ENSG00000111331 OAS3 -306614 sc-eQTL 3.31e-01 0.187 0.191 0.05 CD4_CTL L2
ENSG00000111335 OAS2 -346565 sc-eQTL 7.53e-01 -0.0591 0.188 0.05 CD4_CTL L2
ENSG00000123064 DDX54 -553649 sc-eQTL 1.18e-02 0.483 0.19 0.05 CD4_CTL L2
ENSG00000135144 DTX1 -424879 sc-eQTL 2.60e-01 -0.156 0.138 0.05 CD4_CTL L2
ENSG00000135148 TRAFD1 506292 sc-eQTL 7.19e-01 0.0722 0.201 0.05 CD4_CTL L2
ENSG00000139405 RITA1 -553696 sc-eQTL 1.77e-01 -0.259 0.191 0.05 CD4_CTL L2
ENSG00000151176 PLBD2 -726736 sc-eQTL 9.74e-01 0.00642 0.197 0.05 CD4_CTL L2
ENSG00000173064 HECTD4 249391 sc-eQTL 9.91e-01 -0.00189 0.17 0.05 CD4_CTL L2
ENSG00000179295 PTPN11 213479 sc-eQTL 1.66e-01 -0.264 0.19 0.05 CD4_CTL L2
ENSG00000186815 TPCN1 -589220 sc-eQTL 8.86e-01 -0.026 0.18 0.05 CD4_CTL L2
ENSG00000198270 TMEM116 618645 sc-eQTL 2.71e-01 -0.22 0.199 0.05 CD4_CTL L2
ENSG00000234608 MAPKAPK5-AS1 788928 sc-eQTL 3.49e-01 0.179 0.191 0.05 CD4_CTL L2
ENSG00000089009 RPL6 212992 sc-eQTL 2.40e-01 0.12 0.101 0.05 NK_HLA L2
ENSG00000089022 MAPKAPK5 789602 sc-eQTL 1.92e-01 0.266 0.203 0.05 NK_HLA L2
ENSG00000089060 SLC8B1 -727663 sc-eQTL 4.97e-01 0.132 0.194 0.05 NK_HLA L2
ENSG00000089127 OAS1 -274953 sc-eQTL 7.02e-01 -0.0657 0.172 0.05 NK_HLA L2
ENSG00000089234 BRAP 945874 sc-eQTL 1.32e-01 0.314 0.207 0.05 NK_HLA L2
ENSG00000089248 ERP29 618482 sc-eQTL 3.97e-01 -0.151 0.177 0.05 NK_HLA L2
ENSG00000111271 ACAD10 945774 sc-eQTL 5.69e-01 -0.113 0.197 0.05 NK_HLA L2
ENSG00000111300 NAA25 523034 sc-eQTL 7.42e-02 0.363 0.202 0.05 NK_HLA L2
ENSG00000111331 OAS3 -306614 sc-eQTL 2.20e-01 -0.219 0.178 0.05 NK_HLA L2
ENSG00000111335 OAS2 -346565 sc-eQTL 1.63e-02 -0.416 0.172 0.05 NK_HLA L2
ENSG00000123064 DDX54 -553649 sc-eQTL 6.52e-01 -0.0956 0.212 0.05 NK_HLA L2
ENSG00000135148 TRAFD1 506292 sc-eQTL 4.09e-02 -0.4 0.195 0.05 NK_HLA L2
ENSG00000139405 RITA1 -553696 sc-eQTL 8.90e-01 0.0283 0.205 0.05 NK_HLA L2
ENSG00000151176 PLBD2 -726736 sc-eQTL 1.50e-01 0.291 0.201 0.05 NK_HLA L2
ENSG00000173064 HECTD4 249391 sc-eQTL 7.42e-01 0.0605 0.183 0.05 NK_HLA L2
ENSG00000179295 PTPN11 213479 sc-eQTL 2.80e-01 0.208 0.192 0.05 NK_HLA L2
ENSG00000198270 TMEM116 618645 sc-eQTL 7.54e-01 0.06 0.191 0.05 NK_HLA L2
ENSG00000234608 MAPKAPK5-AS1 788928 sc-eQTL 1.50e-01 -0.297 0.205 0.05 NK_HLA L2
ENSG00000089009 RPL6 212992 sc-eQTL 5.85e-01 -0.0592 0.108 0.052 gdT L2
ENSG00000089022 MAPKAPK5 789602 sc-eQTL 5.13e-01 0.152 0.231 0.052 gdT L2
ENSG00000089060 SLC8B1 -727663 sc-eQTL 8.37e-01 -0.0426 0.207 0.052 gdT L2
ENSG00000089127 OAS1 -274953 sc-eQTL 9.79e-01 -0.00508 0.196 0.052 gdT L2
ENSG00000089234 BRAP 945874 sc-eQTL 4.72e-01 -0.168 0.233 0.052 gdT L2
ENSG00000089248 ERP29 618482 sc-eQTL 5.12e-01 0.132 0.201 0.052 gdT L2
ENSG00000111271 ACAD10 945774 sc-eQTL 6.24e-01 0.1 0.204 0.052 gdT L2
ENSG00000111300 NAA25 523034 sc-eQTL 7.10e-01 -0.0878 0.236 0.052 gdT L2
ENSG00000111331 OAS3 -306614 sc-eQTL 5.23e-01 -0.141 0.22 0.052 gdT L2
ENSG00000111335 OAS2 -346565 sc-eQTL 7.49e-01 -0.0575 0.179 0.052 gdT L2
ENSG00000123064 DDX54 -553649 sc-eQTL 7.73e-01 -0.067 0.232 0.052 gdT L2
ENSG00000135144 DTX1 -424879 sc-eQTL 2.12e-01 0.229 0.182 0.052 gdT L2
ENSG00000135148 TRAFD1 506292 sc-eQTL 3.80e-01 -0.191 0.217 0.052 gdT L2
ENSG00000139405 RITA1 -553696 sc-eQTL 2.69e-01 -0.26 0.235 0.052 gdT L2
ENSG00000151176 PLBD2 -726736 sc-eQTL 5.32e-01 0.131 0.209 0.052 gdT L2
ENSG00000173064 HECTD4 249391 sc-eQTL 8.28e-01 -0.0454 0.209 0.052 gdT L2
ENSG00000179295 PTPN11 213479 sc-eQTL 2.88e-01 -0.23 0.215 0.052 gdT L2
ENSG00000186815 TPCN1 -589220 sc-eQTL 8.73e-01 0.0341 0.213 0.052 gdT L2
ENSG00000198270 TMEM116 618645 sc-eQTL 7.47e-01 0.0676 0.209 0.052 gdT L2
ENSG00000234608 MAPKAPK5-AS1 788928 sc-eQTL 2.07e-01 -0.277 0.219 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089127 OAS1 -274953 eQTL 0.0454 0.0499 0.0249 0.0 0.0 0.0456
ENSG00000089169 RPH3A 61450 eQTL 0.0117 0.177 0.0701 0.0 0.0 0.0456
ENSG00000173064 HECTD4 249391 eQTL 0.00135 -0.108 0.0334 0.0 0.0 0.0456

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina