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Genes within 1Mb (chr12:111768255:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 -650583 sc-eQTL 9.62e-01 -0.00662 0.139 0.051 B_Activated L2
ENSG00000089022 MAPKAPK5 -73973 sc-eQTL 8.56e-01 0.0412 0.227 0.051 B_Activated L2
ENSG00000089234 BRAP 82299 sc-eQTL 8.46e-01 -0.0441 0.227 0.051 B_Activated L2
ENSG00000089248 ERP29 -245093 sc-eQTL 9.95e-01 -0.00125 0.214 0.051 B_Activated L2
ENSG00000111252 SH2B3 362307 sc-eQTL 2.77e-02 0.454 0.204 0.051 B_Activated L2
ENSG00000111271 ACAD10 82199 sc-eQTL 2.15e-01 -0.269 0.216 0.051 B_Activated L2
ENSG00000111275 ALDH2 1368 sc-eQTL 2.09e-01 0.26 0.206 0.051 B_Activated L2
ENSG00000111300 NAA25 -340541 sc-eQTL 7.56e-01 -0.0735 0.236 0.051 B_Activated L2
ENSG00000135148 TRAFD1 -357283 sc-eQTL 5.55e-01 0.127 0.216 0.051 B_Activated L2
ENSG00000173064 HECTD4 -614184 sc-eQTL 1.07e-02 0.504 0.195 0.051 B_Activated L2
ENSG00000179295 PTPN11 -650096 sc-eQTL 4.36e-01 -0.181 0.232 0.051 B_Activated L2
ENSG00000198270 TMEM116 -244930 sc-eQTL 6.57e-01 0.0922 0.207 0.051 B_Activated L2
ENSG00000198324 PHETA1 399134 sc-eQTL 2.32e-01 0.208 0.174 0.051 B_Activated L2
ENSG00000204842 ATXN2 168579 sc-eQTL 2.26e-01 0.264 0.217 0.051 B_Activated L2
ENSG00000234608 MAPKAPK5-AS1 -74647 sc-eQTL 8.56e-01 0.0415 0.229 0.051 B_Activated L2
ENSG00000089009 RPL6 -650583 sc-eQTL 4.79e-01 0.0896 0.126 0.052 PB L2
ENSG00000089022 MAPKAPK5 -73973 sc-eQTL 3.01e-01 0.284 0.273 0.052 PB L2
ENSG00000089234 BRAP 82299 sc-eQTL 2.27e-01 0.292 0.24 0.052 PB L2
ENSG00000089248 ERP29 -245093 sc-eQTL 3.63e-01 -0.134 0.146 0.052 PB L2
ENSG00000111252 SH2B3 362307 sc-eQTL 3.87e-01 -0.225 0.259 0.052 PB L2
ENSG00000111271 ACAD10 82199 sc-eQTL 8.41e-01 0.0531 0.263 0.052 PB L2
ENSG00000111275 ALDH2 1368 sc-eQTL 4.40e-01 -0.199 0.257 0.052 PB L2
ENSG00000111300 NAA25 -340541 sc-eQTL 9.64e-01 0.0124 0.274 0.052 PB L2
ENSG00000135148 TRAFD1 -357283 sc-eQTL 8.32e-01 -0.0597 0.28 0.052 PB L2
ENSG00000173064 HECTD4 -614184 sc-eQTL 8.40e-01 -0.0412 0.203 0.052 PB L2
ENSG00000179295 PTPN11 -650096 sc-eQTL 7.40e-01 -0.0895 0.269 0.052 PB L2
ENSG00000198270 TMEM116 -244930 sc-eQTL 1.99e-01 -0.359 0.278 0.052 PB L2
ENSG00000198324 PHETA1 399134 sc-eQTL 4.31e-02 -0.489 0.239 0.052 PB L2
ENSG00000204842 ATXN2 168579 sc-eQTL 4.35e-01 0.217 0.278 0.052 PB L2
ENSG00000234608 MAPKAPK5-AS1 -74647 sc-eQTL 9.02e-01 0.0285 0.232 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -73973 eQTL 0.0178 -0.0819 0.0345 0.0 0.0 0.0456
ENSG00000089234 BRAP 82299 eQTL 1.85e-05 0.105 0.0243 0.0 0.0 0.0456
ENSG00000111275 ALDH2 1368 pQTL 0.0115 0.155 0.0613 0.0 0.0 0.0452

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina