Genes within 1Mb (chr12:111548575:A:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000089009 RPL6 -870263 sc-eQTL 2.31e-01 -0.136 0.113 0.059 PB L2
ENSG00000089022 MAPKAPK5 -293653 sc-eQTL 4.77e-01 -0.175 0.246 0.059 PB L2
ENSG00000089234 BRAP -137381 sc-eQTL 6.40e-01 -0.102 0.217 0.059 PB L2
ENSG00000089248 ERP29 -464773 sc-eQTL 8.62e-01 -0.0229 0.132 0.059 PB L2
ENSG00000111252 SH2B3 142627 sc-eQTL 4.11e-01 -0.192 0.233 0.059 PB L2
ENSG00000111271 ACAD10 -137481 sc-eQTL 3.09e-01 -0.241 0.235 0.059 PB L2
ENSG00000111275 ALDH2 -218312 sc-eQTL 1.00e+00 4.82e-05 0.231 0.059 PB L2
ENSG00000111300 NAA25 -560221 sc-eQTL 6.59e-01 0.109 0.246 0.059 PB L2
ENSG00000122986 HVCN1 843625 sc-eQTL 7.22e-01 -0.0485 0.136 0.059 PB L2
ENSG00000135148 TRAFD1 -576963 sc-eQTL 6.65e-01 -0.109 0.252 0.059 PB L2
ENSG00000173064 HECTD4 -833864 sc-eQTL 1.00e-01 -0.299 0.18 0.059 PB L2
ENSG00000179295 PTPN11 -869776 sc-eQTL 7.67e-01 0.0717 0.242 0.059 PB L2
ENSG00000186298 PPP1CC 805636 sc-eQTL 9.56e-01 0.0107 0.195 0.059 PB L2
ENSG00000196850 PPTC7 965257 sc-eQTL 4.56e-01 -0.168 0.224 0.059 PB L2
ENSG00000198270 TMEM116 -464610 sc-eQTL 4.75e-01 0.18 0.251 0.059 PB L2
ENSG00000198324 PHETA1 179454 sc-eQTL 2.95e-01 -0.229 0.217 0.059 PB L2
ENSG00000204842 ATXN2 -51101 sc-eQTL 3.73e-01 0.223 0.249 0.059 PB L2
ENSG00000204852 TCTN1 934548 sc-eQTL 8.95e-01 -0.0251 0.19 0.059 PB L2
ENSG00000234608 MAPKAPK5-AS1 -294327 sc-eQTL 1.67e-01 0.287 0.206 0.059 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000173064 HECTD4 -833864 eQTL 1.04e-05 0.154 0.0348 0.0 0.0 0.0407
ENSG00000186298 PPP1CC 805636 eQTL 2.78e-02 0.0647 0.0294 0.00233 0.0 0.0407
ENSG00000198324 PHETA1 179454 eQTL 0.03 0.102 0.0467 0.0 0.0 0.0407
ENSG00000204842 ATXN2 -51101 eQTL 1.34e-02 0.0815 0.0329 0.0 0.0 0.0407
ENSG00000234608 MAPKAPK5-AS1 -294327 eQTL 0.00707 -0.0865 0.032 0.0 0.0 0.0407


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000173064 HECTD4 -833864 2.67e-07 1.34e-07 4.98e-08 1.9e-07 9.8e-08 9.91e-08 1.67e-07 5.66e-08 1.5e-07 6.08e-08 1.63e-07 1.11e-07 1.71e-07 7.64e-08 5.98e-08 7.74e-08 4.12e-08 1.4e-07 6.32e-08 4.8e-08 1.26e-07 1.25e-07 1.44e-07 2.79e-08 1.68e-07 1.23e-07 1.13e-07 1.04e-07 1.22e-07 1e-07 1.06e-07 2.96e-08 3.73e-08 8.56e-08 4.84e-08 3.14e-08 5.61e-08 8.71e-08 6.58e-08 3.67e-08 5.48e-08 1.46e-07 5.22e-08 1.13e-08 4.67e-08 1.87e-08 1.2e-07 3.79e-09 5.02e-08
ENSG00000204842 ATXN2 -51101 9.25e-06 1.13e-05 1.68e-06 6.97e-06 2.42e-06 4.92e-06 1.22e-05 2.14e-06 1.05e-05 5.41e-06 1.35e-05 6.14e-06 1.88e-05 3.95e-06 3.62e-06 7.09e-06 5.38e-06 8.54e-06 3.39e-06 3.36e-06 6.71e-06 1.04e-05 1.02e-05 4.02e-06 1.98e-05 4.53e-06 6.94e-06 5.2e-06 1.3e-05 1e-05 6.58e-06 1.08e-06 1.33e-06 3.93e-06 5.21e-06 2.87e-06 1.76e-06 1.99e-06 2.65e-06 1.5e-06 1.67e-06 1.39e-05 1.47e-06 2.8e-07 1.02e-06 2.12e-06 1.96e-06 7.87e-07 6.07e-07