Genes within 1Mb (chr12:110952650:TAGAA:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000089022 MAPKAPK5 -889578 eQTL 4.43e-02 -0.0371 0.0184 0.0 0.0 0.21
ENSG00000111229 ARPC3 502313 eQTL 2.57e-02 0.0216 0.00966 0.0 0.0 0.21
ENSG00000111231 GPN3 483382 eQTL 1.38e-25 0.27 0.0251 0.00236 0.00958 0.21
ENSG00000111249 CUX2 -81515 eQTL 6.79e-02 0.0566 0.031 0.00107 0.0 0.21
ENSG00000111275 ALDH2 -814237 pQTL 1.11e-25 -0.333 0.0311 0.0 0.0 0.205
ENSG00000111275 ALDH2 -814237 eQTL 1.66e-09 -0.124 0.0203 0.0 0.0 0.21
ENSG00000122986 HVCN1 247700 eQTL 7.74e-03 -0.0449 0.0168 0.00337 0.00112 0.21
ENSG00000198324 PHETA1 -416471 eQTL 1.26e-02 0.0586 0.0234 0.0 0.0 0.21
ENSG00000204842 ATXN2 -647026 eQTL 1.18e-02 0.0417 0.0165 0.0 0.0 0.21
ENSG00000258359 PCNPP1 -717712 eQTL 3.84e-03 -0.122 0.042 0.0 0.0 0.21
ENSG00000277595 AC007546.1 920405 eQTL 4.54e-04 0.0686 0.0195 0.00185 0.0 0.21


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000089022 MAPKAPK5 -889578 2.64e-07 1.01e-07 3.65e-08 1.82e-07 9.02e-08 9.3e-08 1.41e-07 5.24e-08 1.42e-07 4.23e-08 1.63e-07 7.58e-08 1.45e-07 6.21e-08 4.89e-08 8.01e-08 4.94e-08 1.1e-07 5.22e-08 4.03e-08 1.05e-07 1.33e-07 1.29e-07 4.82e-08 1.33e-07 1.15e-07 1.13e-07 8.71e-08 1.03e-07 1.1e-07 9.58e-08 3.89e-08 2.74e-08 9.72e-08 8.87e-08 3.77e-08 5.08e-08 9.26e-08 7.58e-08 3.03e-08 2.99e-08 1.37e-07 5.21e-08 3.36e-08 1.01e-07 1.75e-08 1.44e-07 4.7e-09 4.72e-08
ENSG00000111231 GPN3 483382 6.8e-07 2.17e-07 8.02e-08 4.31e-07 1.05e-07 1.08e-07 3.7e-07 5.43e-08 1.98e-07 6.75e-08 2.07e-07 1.01e-07 9.44e-07 9.18e-08 6.18e-08 9.01e-08 7.3e-08 2.04e-07 7.12e-08 8.69e-08 1.33e-07 1.56e-07 1.89e-07 4.15e-08 5.53e-07 1.65e-07 1.17e-07 1.1e-07 2.4e-07 2.59e-07 1.59e-07 4.23e-08 3.38e-08 4.83e-07 1.95e-07 7.98e-08 1.05e-07 8.17e-08 4.78e-08 6.92e-08 5.45e-08 2.91e-07 5.91e-08 2.06e-08 3.4e-08 1.19e-08 1.19e-07 3.83e-09 5.04e-08
ENSG00000111249 CUX2 -81515 1.73e-05 2.05e-05 4.54e-06 8.36e-06 2.5e-06 5.46e-06 2.03e-05 2.13e-06 1.4e-05 6.13e-06 1.68e-05 5.74e-06 3.03e-05 5.09e-06 4.55e-06 6.69e-06 9.88e-06 9.12e-06 3.52e-06 2.84e-06 6.01e-06 1.06e-05 1.48e-05 3.73e-06 1.98e-05 4.65e-06 4.86e-06 4.62e-06 1.72e-05 1.27e-05 8.17e-06 1.27e-06 1.19e-06 3.49e-06 5.87e-06 2.85e-06 1.77e-06 1.95e-06 2.23e-06 1.89e-06 1.02e-06 2.33e-05 3.44e-06 4.21e-07 9.99e-07 2.12e-06 1.28e-06 1.24e-06 9.57e-07
ENSG00000111275 ALDH2 -814237 2.69e-07 1.1e-07 3.56e-08 1.9e-07 8.83e-08 9.71e-08 1.42e-07 5.21e-08 1.41e-07 4.24e-08 1.6e-07 8.02e-08 1.59e-07 6.56e-08 4.84e-08 7.89e-08 4.63e-08 1.14e-07 5.2e-08 4.2e-08 1.04e-07 1.3e-07 1.3e-07 4.54e-08 1.32e-07 1.19e-07 1.1e-07 8.7e-08 1.05e-07 1.11e-07 9.73e-08 3.71e-08 2.74e-08 9.61e-08 8.74e-08 3.94e-08 5.22e-08 9.13e-08 7.2e-08 3.18e-08 3.51e-08 1.31e-07 5.24e-08 2.1e-08 9.21e-08 1.72e-08 1.35e-07 4.6e-09 4.61e-08
ENSG00000198324 PHETA1 -416471 1.01e-06 4.63e-07 1.2e-07 3.89e-07 1.12e-07 1.64e-07 5.76e-07 5.62e-08 3.17e-07 1.15e-07 4.3e-07 1.23e-07 1.46e-06 1.49e-07 5.97e-08 1.26e-07 2.34e-07 2.9e-07 7.53e-08 1.28e-07 1.76e-07 2.24e-07 3.07e-07 1.13e-07 1.16e-06 2.32e-07 1.33e-07 1.54e-07 4.39e-07 6.27e-07 2.54e-07 5.46e-08 4.76e-08 6.86e-07 3.55e-07 2.54e-07 1.23e-07 6e-08 5.93e-08 5.64e-08 5.65e-08 6.19e-07 5.66e-08 1.06e-08 3.3e-08 8.42e-09 1.2e-07 1.91e-09 4.79e-08
ENSG00000229186 \N -946613 2.61e-07 1.06e-07 3.69e-08 1.82e-07 9.65e-08 9.32e-08 1.42e-07 5.24e-08 1.37e-07 4.23e-08 1.63e-07 7.58e-08 1.41e-07 6.21e-08 4.89e-08 8.01e-08 4.94e-08 1.1e-07 5.22e-08 3.89e-08 1.06e-07 1.31e-07 1.29e-07 4.98e-08 1.31e-07 1.13e-07 1.13e-07 8.45e-08 1.02e-07 1.11e-07 9.58e-08 3.76e-08 2.74e-08 9.81e-08 9.07e-08 3.99e-08 5.01e-08 9.2e-08 7.92e-08 3.07e-08 3.16e-08 1.36e-07 4.89e-08 2.32e-08 1.01e-07 1.75e-08 1.44e-07 4.7e-09 4.72e-08