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Genes within 1Mb (chr12:110761677:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000076513 ANKRD13A 762491 sc-eQTL 1.37e-02 0.47 0.189 0.051 B_Activated L2
ENSG00000089234 BRAP -924279 sc-eQTL 8.17e-02 -0.377 0.215 0.051 B_Activated L2
ENSG00000111229 ARPC3 311255 sc-eQTL 3.51e-01 -0.147 0.157 0.051 B_Activated L2
ENSG00000111231 GPN3 292409 sc-eQTL 7.45e-01 -0.0644 0.198 0.051 B_Activated L2
ENSG00000111237 VPS29 259566 sc-eQTL 1.20e-01 0.334 0.213 0.051 B_Activated L2
ENSG00000111252 SH2B3 -644271 sc-eQTL 8.43e-01 -0.0393 0.199 0.051 B_Activated L2
ENSG00000111271 ACAD10 -924379 sc-eQTL 3.53e-01 0.193 0.208 0.051 B_Activated L2
ENSG00000122970 IFT81 637342 sc-eQTL 4.17e-01 -0.13 0.16 0.051 B_Activated L2
ENSG00000122986 HVCN1 56727 sc-eQTL 7.02e-01 0.0653 0.17 0.051 B_Activated L2
ENSG00000139433 GLTP 881136 sc-eQTL 2.79e-01 0.251 0.232 0.051 B_Activated L2
ENSG00000139436 GIT2 765288 sc-eQTL 5.74e-01 -0.121 0.215 0.051 B_Activated L2
ENSG00000139437 TCHP 861413 sc-eQTL 3.05e-01 0.211 0.205 0.051 B_Activated L2
ENSG00000174437 ATP2A2 480921 sc-eQTL 1.76e-01 0.278 0.205 0.051 B_Activated L2
ENSG00000174456 C12orf76 688043 sc-eQTL 7.41e-01 0.0747 0.225 0.051 B_Activated L2
ENSG00000186298 PPP1CC 18738 sc-eQTL 3.23e-01 0.227 0.229 0.051 B_Activated L2
ENSG00000196510 ANAPC7 357947 sc-eQTL 4.94e-01 -0.144 0.209 0.051 B_Activated L2
ENSG00000196850 PPTC7 178359 sc-eQTL 1.62e-02 0.51 0.21 0.051 B_Activated L2
ENSG00000198324 PHETA1 -607444 sc-eQTL 9.57e-01 0.00906 0.167 0.051 B_Activated L2
ENSG00000204842 ATXN2 -837999 sc-eQTL 9.01e-01 0.026 0.209 0.051 B_Activated L2
ENSG00000204852 TCTN1 147650 sc-eQTL 1.39e-01 0.315 0.212 0.051 B_Activated L2
ENSG00000204856 FAM216A 293262 sc-eQTL 3.95e-01 0.171 0.2 0.051 B_Activated L2
ENSG00000076513 ANKRD13A 762491 sc-eQTL 5.43e-01 -0.137 0.224 0.054 pDC L2
ENSG00000089234 BRAP -924279 sc-eQTL 2.97e-01 0.231 0.221 0.054 pDC L2
ENSG00000111229 ARPC3 311255 sc-eQTL 2.79e-01 -0.137 0.126 0.054 pDC L2
ENSG00000111231 GPN3 292409 sc-eQTL 6.08e-01 0.11 0.214 0.054 pDC L2
ENSG00000111237 VPS29 259566 sc-eQTL 2.75e-02 0.416 0.187 0.054 pDC L2
ENSG00000111249 CUX2 -272488 sc-eQTL 4.84e-01 -0.103 0.146 0.054 pDC L2
ENSG00000111252 SH2B3 -644271 sc-eQTL 9.01e-02 -0.183 0.108 0.054 pDC L2
ENSG00000111271 ACAD10 -924379 sc-eQTL 8.55e-01 -0.042 0.229 0.054 pDC L2
ENSG00000122970 IFT81 637342 sc-eQTL 6.68e-01 -0.0837 0.195 0.054 pDC L2
ENSG00000122986 HVCN1 56727 sc-eQTL 6.18e-01 0.0947 0.189 0.054 pDC L2
ENSG00000139433 GLTP 881136 sc-eQTL 6.00e-02 -0.368 0.194 0.054 pDC L2
ENSG00000139436 GIT2 765288 sc-eQTL 6.05e-02 -0.345 0.183 0.054 pDC L2
ENSG00000139437 TCHP 861413 sc-eQTL 3.58e-01 -0.18 0.195 0.054 pDC L2
ENSG00000174437 ATP2A2 480921 sc-eQTL 4.83e-01 -0.149 0.212 0.054 pDC L2
ENSG00000174456 C12orf76 688043 sc-eQTL 8.22e-01 -0.0528 0.235 0.054 pDC L2
ENSG00000186298 PPP1CC 18738 sc-eQTL 1.52e-01 -0.276 0.192 0.054 pDC L2
ENSG00000196510 ANAPC7 357947 sc-eQTL 6.45e-01 0.0963 0.209 0.054 pDC L2
ENSG00000196850 PPTC7 178359 sc-eQTL 6.16e-01 0.103 0.205 0.054 pDC L2
ENSG00000198324 PHETA1 -607444 sc-eQTL 8.86e-01 0.0269 0.188 0.054 pDC L2
ENSG00000204842 ATXN2 -837999 sc-eQTL 9.47e-01 0.0148 0.221 0.054 pDC L2
ENSG00000204852 TCTN1 147650 sc-eQTL 8.62e-01 0.0372 0.214 0.054 pDC L2
ENSG00000204856 FAM216A 293262 sc-eQTL 4.08e-01 0.156 0.188 0.054 pDC L2
ENSG00000257595 LINC02356 -607584 sc-eQTL 9.84e-01 0.00322 0.165 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076513 ANKRD13A 762491 eQTL 0.0174 0.0748 0.0314 0.0 0.0 0.0304
ENSG00000122970 IFT81 637342 eQTL 0.0271 -0.147 0.0666 0.00221 0.0 0.0304
ENSG00000139437 TCHP 861403 eQTL 0.0317 0.104 0.0485 0.0 0.0 0.0304
ENSG00000174456 C12orf76 688043 eQTL 1.89e-02 0.141 0.0601 0.0 0.0 0.0304
ENSG00000186298 PPP1CC 18738 pQTL 3.95e-03 -0.114 0.0394 0.00533 0.0028 0.0322
ENSG00000196510 ANAPC7 357947 eQTL 0.00656 -0.128 0.0471 0.0 0.0 0.0304
ENSG00000204852 TCTN1 147650 eQTL 1.94e-02 -0.105 0.0449 0.0 0.0 0.0304

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina