Genes within 1Mb (chr12:110684661:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076513 ANKRD13A 685475 eQTL 1.19e-10 -0.154 0.0236 0.0 0.0 0.05
ENSG00000111199 TRPV4 851260 eQTL 1.11e-03 -0.206 0.0631 0.0 0.0 0.05
ENSG00000111229 ARPC3 234324 eQTL 1.16e-15 -0.143 0.0175 0.00507 0.0115 0.05
ENSG00000111231 GPN3 215393 eQTL 4.60e-37 -0.608 0.0457 0.0 0.0 0.05
ENSG00000111237 VPS29 182544 eQTL 3.22e-05 -0.112 0.0269 0.0 0.0 0.05
ENSG00000111249 CUX2 -349504 eQTL 1.29e-01 0.0882 0.058 0.00112 0.0 0.05
ENSG00000139437 TCHP 784387 eQTL 3.22e-04 0.134 0.037 0.0 0.0 0.05
ENSG00000174456 C12orf76 611027 eQTL 4.04e-04 -0.163 0.0459 0.0 0.0 0.05
ENSG00000186298 PPP1CC -58278 pQTL 2.11e-02 0.0709 0.0307 0.00159 0.0 0.0535
ENSG00000204852 TCTN1 70634 eQTL 1.80e-01 0.0463 0.0345 0.00129 0.0 0.05
ENSG00000204856 FAM216A 215880 eQTL 1.86e-14 -0.358 0.046 0.0 0.0 0.05
ENSG00000277299 AC084876.1 736272 eQTL 2.77e-03 -0.2 0.0668 0.00353 0.00181 0.05
ENSG00000277595 AC007546.1 652416 eQTL 1.20e-01 -0.0571 0.0367 0.00109 0.0 0.05
ENSG00000278993 AC002350.1 183047 eQTL 1.29e-02 -0.164 0.0658 0.00223 0.0 0.05
ENSG00000280426 AC084876.2 685534 eQTL 1.73e-05 -0.189 0.0437 0.00237 0.00275 0.05


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000076513 ANKRD13A 685475 7.87e-07 1.5e-07 6.55e-08 2.44e-07 9.24e-08 1.26e-07 2.16e-07 5.4e-08 1.47e-07 4.74e-08 1.54e-07 8.55e-08 2.13e-07 8e-08 5.69e-08 7.97e-08 3.87e-08 1.77e-07 6.32e-08 5.33e-08 1.21e-07 1.25e-07 1.44e-07 3.23e-08 1.68e-07 1.25e-07 1.29e-07 9.74e-08 1.2e-07 9.88e-08 1.06e-07 3.65e-08 3.3e-08 9.5e-08 7.44e-08 3.14e-08 5.59e-08 9.3e-08 6.58e-08 4.24e-08 4.46e-08 1.59e-07 3.31e-08 1.08e-08 3.29e-08 1.01e-08 1.19e-07 4.04e-09 4.91e-08
ENSG00000111199 TRPV4 851260 3.62e-07 1.25e-07 4.98e-08 2.07e-07 8.83e-08 8.33e-08 1.61e-07 5.33e-08 1.44e-07 4.38e-08 1.59e-07 7.75e-08 1.47e-07 6.76e-08 5.91e-08 7.3e-08 4.48e-08 1.27e-07 5.36e-08 4.1e-08 1.05e-07 1.23e-07 1.32e-07 4.26e-08 1.37e-07 1.14e-07 1.18e-07 9.32e-08 1.05e-07 1.1e-07 9.91e-08 4.03e-08 2.91e-08 8.56e-08 3.52e-08 3.93e-08 5.01e-08 9.55e-08 6.78e-08 3.8e-08 3.91e-08 1.36e-07 5.27e-08 7.35e-09 4.25e-08 1.84e-08 1.26e-07 4.33e-09 4.85e-08
ENSG00000111229 ARPC3 234324 8.39e-06 3.14e-06 2.73e-07 2.46e-06 3.88e-07 1.57e-06 1.82e-06 3.75e-07 1.6e-06 6.9e-07 1.97e-06 1.29e-06 3.49e-06 1.38e-06 6.23e-07 1.21e-06 1.04e-06 2.12e-06 5.46e-07 1.16e-06 6.44e-07 2.25e-06 1.79e-06 8.07e-07 3.07e-06 9.87e-07 1.44e-06 1.06e-06 1.72e-06 1.65e-06 8.88e-07 2.84e-07 3.27e-07 1.14e-06 1.68e-06 5.24e-07 7.11e-07 3.59e-07 6.78e-07 3.66e-07 3.01e-07 3.87e-06 4.01e-07 1.33e-07 3.13e-07 3.24e-07 2.37e-07 8.81e-08 5.25e-08
ENSG00000111231 GPN3 215393 1.05e-05 4.12e-06 3.44e-07 2.96e-06 4.89e-07 1.5e-06 2.26e-06 4.99e-07 1.95e-06 7.72e-07 2.49e-06 1.35e-06 3.66e-06 1.4e-06 9.01e-07 1.7e-06 1.14e-06 2.87e-06 6.65e-07 1.52e-06 7.02e-07 3.02e-06 2.33e-06 9.91e-07 3.89e-06 1.29e-06 1.84e-06 1.39e-06 1.81e-06 1.86e-06 1.65e-06 2.7e-07 3.95e-07 1.2e-06 1.95e-06 6.12e-07 7.5e-07 3.45e-07 9.35e-07 3.8e-07 2.67e-07 4.15e-06 6.29e-07 1.66e-07 3.89e-07 3.29e-07 3.8e-07 8.37e-08 8.28e-08
ENSG00000139433 \N 804120 4.37e-07 1.3e-07 5.35e-08 2.24e-07 9.21e-08 8.75e-08 1.6e-07 5.33e-08 1.44e-07 4.4e-08 1.56e-07 7.78e-08 1.53e-07 7.13e-08 6.18e-08 7.53e-08 3.88e-08 1.4e-07 5.39e-08 4.31e-08 1.04e-07 1.28e-07 1.34e-07 4.16e-08 1.46e-07 1.16e-07 1.17e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 3.96e-08 2.92e-08 8.7e-08 3.12e-08 3.95e-08 5.02e-08 9.65e-08 6.54e-08 4.19e-08 4.36e-08 1.46e-07 4.17e-08 1.09e-08 3.83e-08 1.89e-08 1.23e-07 4.26e-09 4.77e-08
ENSG00000139436 \N 688272 7.87e-07 1.42e-07 6.41e-08 2.44e-07 9.24e-08 1.26e-07 2.1e-07 5.4e-08 1.47e-07 4.74e-08 1.54e-07 8.55e-08 2.13e-07 8e-08 5.36e-08 7.74e-08 3.87e-08 1.77e-07 6.32e-08 5.33e-08 1.21e-07 1.25e-07 1.44e-07 3.23e-08 1.68e-07 1.21e-07 1.29e-07 9.74e-08 1.2e-07 9.88e-08 1.06e-07 3.65e-08 3.3e-08 9.52e-08 6.98e-08 3.14e-08 5.29e-08 9.3e-08 6.71e-08 4.24e-08 4.51e-08 1.59e-07 3.31e-08 1.08e-08 3.29e-08 1.01e-08 1.19e-07 4.04e-09 4.91e-08
ENSG00000139437 TCHP 784387 4.89e-07 1.27e-07 5.64e-08 2.27e-07 9.21e-08 8.4e-08 1.67e-07 5.19e-08 1.45e-07 4.4e-08 1.62e-07 7.78e-08 1.59e-07 7.37e-08 6.25e-08 7.36e-08 3.88e-08 1.4e-07 5.82e-08 4.3e-08 1.08e-07 1.28e-07 1.39e-07 4.05e-08 1.5e-07 1.14e-07 1.19e-07 9.57e-08 1.08e-07 1.02e-07 9.7e-08 3.94e-08 2.92e-08 9.3e-08 3.51e-08 3.6e-08 5.05e-08 9.62e-08 6.54e-08 4.55e-08 4.27e-08 1.46e-07 3.35e-08 1.43e-08 3.4e-08 1.92e-08 1.22e-07 4.2e-09 4.77e-08
ENSG00000174456 C12orf76 611027 1.07e-06 1.76e-07 7.16e-08 3.57e-07 1.03e-07 1.77e-07 2.86e-07 5.43e-08 1.66e-07 5.42e-08 1.73e-07 1.05e-07 3.04e-07 8.66e-08 6.93e-08 9.01e-08 4.12e-08 2.33e-07 7.18e-08 6.73e-08 1.27e-07 1.56e-07 1.58e-07 2.79e-08 2.28e-07 1.23e-07 1.74e-07 1.04e-07 1.34e-07 1.1e-07 1.14e-07 2.99e-08 3.66e-08 1.01e-07 1.76e-07 2.74e-08 5.35e-08 8.76e-08 6.49e-08 6.67e-08 4.39e-08 1.79e-07 2.63e-08 1.14e-08 3.34e-08 9.86e-09 1.18e-07 3.92e-09 4.79e-08
ENSG00000204856 FAM216A 215880 1.04e-05 3.93e-06 3.61e-07 2.89e-06 4.87e-07 1.56e-06 2.26e-06 4.97e-07 1.89e-06 7.54e-07 2.47e-06 1.31e-06 3.64e-06 1.42e-06 9.17e-07 1.7e-06 1.1e-06 2.83e-06 6.34e-07 1.52e-06 6.7e-07 3.05e-06 2.33e-06 1.02e-06 3.88e-06 1.26e-06 1.84e-06 1.4e-06 1.78e-06 1.84e-06 1.64e-06 2.7e-07 3.94e-07 1.18e-06 1.92e-06 6.12e-07 7.5e-07 3.45e-07 9.35e-07 3.8e-07 2.93e-07 4.15e-06 6.29e-07 1.66e-07 3.75e-07 3.29e-07 3.78e-07 8.37e-08 8.28e-08
ENSG00000277299 AC084876.1 736272 6.09e-07 1.35e-07 6.04e-08 2.35e-07 9.25e-08 1.13e-07 1.81e-07 5.2e-08 1.45e-07 4.57e-08 1.62e-07 8.36e-08 1.79e-07 7.95e-08 5.94e-08 7.5e-08 3.94e-08 1.56e-07 5.97e-08 4.92e-08 1.13e-07 1.24e-07 1.44e-07 3.68e-08 1.63e-07 1.14e-07 1.23e-07 9.65e-08 1.12e-07 1.07e-07 9.92e-08 4.09e-08 3.26e-08 9.8e-08 5.16e-08 3.53e-08 4.99e-08 9.22e-08 6.63e-08 3.75e-08 4.83e-08 1.46e-07 3.13e-08 1.43e-08 3.41e-08 1.68e-08 1.24e-07 4.14e-09 4.77e-08
ENSG00000280426 AC084876.2 685534 7.87e-07 1.5e-07 6.55e-08 2.44e-07 9.24e-08 1.26e-07 2.16e-07 5.4e-08 1.47e-07 4.74e-08 1.54e-07 8.55e-08 2.13e-07 8e-08 5.69e-08 7.97e-08 3.87e-08 1.77e-07 6.32e-08 5.33e-08 1.21e-07 1.25e-07 1.44e-07 3.23e-08 1.68e-07 1.25e-07 1.29e-07 9.74e-08 1.2e-07 9.88e-08 1.06e-07 3.65e-08 3.3e-08 9.5e-08 7.44e-08 3.14e-08 5.59e-08 9.3e-08 6.58e-08 4.24e-08 4.46e-08 1.59e-07 3.31e-08 1.08e-08 3.29e-08 1.01e-08 1.19e-07 4.04e-09 4.91e-08