Genes within 1Mb (chr12:109536592:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075856 SART3 975192 sc-eQTL 5.93e-01 0.105 0.197 0.051 cDC L2
ENSG00000076248 UNG 439018 sc-eQTL 8.97e-01 0.022 0.171 0.051 cDC L2
ENSG00000076513 ANKRD13A -462594 sc-eQTL 9.06e-01 -0.0215 0.183 0.051 cDC L2
ENSG00000076555 ACACB 419997 sc-eQTL 6.76e-01 -0.0752 0.18 0.051 cDC L2
ENSG00000084112 SSH1 679002 sc-eQTL 4.76e-01 -0.145 0.203 0.051 cDC L2
ENSG00000110876 SELPLG 902633 sc-eQTL 6.91e-01 0.0603 0.151 0.051 cDC L2
ENSG00000110880 CORO1C 804996 sc-eQTL 7.33e-01 -0.0617 0.181 0.051 cDC L2
ENSG00000110906 KCTD10 59233 sc-eQTL 3.30e-01 -0.207 0.212 0.051 cDC L2
ENSG00000110921 MVK -36663 sc-eQTL 3.60e-01 -0.18 0.196 0.051 cDC L2
ENSG00000111229 ARPC3 -913830 sc-eQTL 8.50e-01 -0.0206 0.109 0.051 cDC L2
ENSG00000111231 GPN3 -932676 sc-eQTL 1.08e-01 0.312 0.193 0.051 cDC L2
ENSG00000111237 VPS29 -965519 sc-eQTL 1.07e-02 0.401 0.156 0.051 cDC L2
ENSG00000122970 IFT81 -587743 sc-eQTL 3.11e-01 0.172 0.169 0.051 cDC L2
ENSG00000135093 USP30 513503 sc-eQTL 3.11e-01 -0.196 0.193 0.051 cDC L2
ENSG00000136003 ISCU 974010 sc-eQTL 3.29e-01 0.199 0.203 0.051 cDC L2
ENSG00000139428 MMAB -36988 sc-eQTL 3.03e-01 -0.208 0.201 0.051 cDC L2
ENSG00000139433 GLTP -343949 sc-eQTL 2.92e-02 -0.401 0.182 0.051 cDC L2
ENSG00000139436 GIT2 -459797 sc-eQTL 8.89e-01 0.0232 0.167 0.051 cDC L2
ENSG00000139437 TCHP -363672 sc-eQTL 7.13e-02 -0.373 0.206 0.051 cDC L2
ENSG00000151148 UBE3B 59190 sc-eQTL 5.92e-01 -0.107 0.199 0.051 cDC L2
ENSG00000174437 ATP2A2 -744164 sc-eQTL 3.78e-01 0.153 0.173 0.051 cDC L2
ENSG00000174456 C12orf76 -537042 sc-eQTL 4.02e-01 -0.174 0.207 0.051 cDC L2
ENSG00000189046 ALKBH2 442961 sc-eQTL 1.24e-01 0.311 0.201 0.051 cDC L2
ENSG00000196510 ANAPC7 -867138 sc-eQTL 7.85e-01 -0.0517 0.189 0.051 cDC L2
ENSG00000204856 FAM216A -931823 sc-eQTL 7.54e-02 -0.328 0.184 0.051 cDC L2
ENSG00000256262 USP30-AS1 482640 sc-eQTL 6.30e-01 0.0806 0.167 0.051 cDC L2
ENSG00000257221 AC007569.1 907924 sc-eQTL 6.88e-01 0.0564 0.14 0.051 cDC L2
ENSG00000075856 SART3 975192 sc-eQTL 2.64e-01 -0.224 0.2 0.056 pDC L2
ENSG00000076248 UNG 439018 sc-eQTL 9.73e-01 0.0064 0.187 0.056 pDC L2
ENSG00000076513 ANKRD13A -462594 sc-eQTL 6.97e-01 0.0831 0.213 0.056 pDC L2
ENSG00000076555 ACACB 419997 sc-eQTL 5.07e-01 -0.128 0.192 0.056 pDC L2
ENSG00000084112 SSH1 679002 sc-eQTL 3.09e-01 -0.206 0.202 0.056 pDC L2
ENSG00000110876 SELPLG 902633 sc-eQTL 7.99e-01 -0.0341 0.134 0.056 pDC L2
ENSG00000110880 CORO1C 804996 sc-eQTL 3.30e-01 -0.143 0.146 0.056 pDC L2
ENSG00000110906 KCTD10 59233 sc-eQTL 4.62e-01 0.166 0.226 0.056 pDC L2
ENSG00000110921 MVK -36663 sc-eQTL 5.79e-01 -0.105 0.189 0.056 pDC L2
ENSG00000111229 ARPC3 -913830 sc-eQTL 9.55e-01 0.00681 0.12 0.056 pDC L2
ENSG00000111231 GPN3 -932676 sc-eQTL 5.36e-01 -0.126 0.203 0.056 pDC L2
ENSG00000111237 VPS29 -965519 sc-eQTL 1.84e-01 -0.24 0.179 0.056 pDC L2
ENSG00000122970 IFT81 -587743 sc-eQTL 8.77e-01 -0.0288 0.185 0.056 pDC L2
ENSG00000135093 USP30 513503 sc-eQTL 9.67e-01 -0.0083 0.198 0.056 pDC L2
ENSG00000136003 ISCU 974010 sc-eQTL 6.91e-01 0.0666 0.168 0.056 pDC L2
ENSG00000139428 MMAB -36988 sc-eQTL 8.97e-02 -0.336 0.197 0.056 pDC L2
ENSG00000139433 GLTP -343949 sc-eQTL 6.00e-01 0.098 0.187 0.056 pDC L2
ENSG00000139436 GIT2 -459797 sc-eQTL 6.15e-01 0.0882 0.175 0.056 pDC L2
ENSG00000139437 TCHP -363672 sc-eQTL 4.39e-02 -0.373 0.184 0.056 pDC L2
ENSG00000151148 UBE3B 59190 sc-eQTL 8.00e-01 0.0543 0.214 0.056 pDC L2
ENSG00000174437 ATP2A2 -744164 sc-eQTL 4.60e-01 0.149 0.201 0.056 pDC L2
ENSG00000174456 C12orf76 -537042 sc-eQTL 2.02e-01 0.284 0.222 0.056 pDC L2
ENSG00000189046 ALKBH2 442961 sc-eQTL 1.88e-01 -0.253 0.191 0.056 pDC L2
ENSG00000196510 ANAPC7 -867138 sc-eQTL 8.41e-01 0.0399 0.198 0.056 pDC L2
ENSG00000204856 FAM216A -931823 sc-eQTL 8.11e-02 -0.311 0.177 0.056 pDC L2
ENSG00000256262 USP30-AS1 482640 sc-eQTL 4.56e-01 -0.133 0.178 0.056 pDC L2
ENSG00000257221 AC007569.1 907924 sc-eQTL 9.42e-01 -0.0136 0.187 0.056 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000076555 ACACB 419997 eQTL 0.00237 -0.197 0.0645 0.0 0.0 0.0353
ENSG00000110906 KCTD10 59233 eQTL 0.00323 -0.139 0.0472 0.0 0.0 0.0353
ENSG00000110921 MVK -36663 eQTL 0.0057 -0.167 0.0602 0.0 0.0 0.0353
ENSG00000139428 MMAB -36988 eQTL 3.94e-05 -0.22 0.0533 0.0 0.0 0.0353
ENSG00000151148 UBE3B 59190 eQTL 0.00118 0.139 0.0426 0.0067 0.00206 0.0353
ENSG00000174456 C12orf76 -537042 eQTL 7.58e-03 0.144 0.0539 0.0 0.0 0.0353
ENSG00000196510 ANAPC7 -867138 eQTL 0.000606 0.145 0.0421 0.0 0.00123 0.0353
ENSG00000286220 AC007546.3 -537094 eQTL 0.0131 -0.237 0.0952 0.00157 0.0 0.0353


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000076248 \N 439018 3.06e-06 3.13e-06 5.33e-07 1.91e-06 4.71e-07 8.41e-07 1.78e-06 6.09e-07 2.28e-06 1.4e-06 2.48e-06 1.35e-06 3.69e-06 1.22e-06 9.24e-07 2e-06 1.09e-06 2.26e-06 1.56e-06 1.35e-06 1.28e-06 3.16e-06 2.59e-06 1.01e-06 4.64e-06 1.07e-06 1.45e-06 1.75e-06 2.54e-06 1.84e-06 1.99e-06 3.42e-07 3.79e-07 1.27e-06 1.6e-06 7.02e-07 8.44e-07 4.2e-07 7.65e-07 3.79e-07 3.05e-07 5.14e-06 3.77e-07 1.59e-07 3.82e-07 3.52e-07 7.4e-07 2.52e-07 2.71e-07
ENSG00000076555 ACACB 419997 3.47e-06 3.67e-06 6.04e-07 1.86e-06 6.15e-07 8.42e-07 2.13e-06 6.83e-07 2.53e-06 1.47e-06 3.02e-06 1.35e-06 4.27e-06 1.33e-06 9.1e-07 2.28e-06 1.27e-06 2.25e-06 1.47e-06 1.41e-06 1.41e-06 3.54e-06 2.69e-06 1e-06 4.62e-06 1.26e-06 1.58e-06 1.73e-06 2.82e-06 1.86e-06 1.99e-06 3.8e-07 3.75e-07 1.22e-06 1.68e-06 8.86e-07 7.36e-07 3.86e-07 9.58e-07 3.99e-07 2.14e-07 5.49e-06 4.34e-07 1.65e-07 3.4e-07 3.22e-07 8.02e-07 2.63e-07 2.84e-07
ENSG00000110906 KCTD10 59233 2.37e-05 2.95e-05 4.54e-06 1.45e-05 4.86e-06 1.15e-05 3.46e-05 4.28e-06 2.55e-05 1.31e-05 3.44e-05 1.25e-05 4.23e-05 1.17e-05 5.88e-06 1.61e-05 1.3e-05 2.07e-05 6.96e-06 5.38e-06 1.19e-05 2.66e-05 2.52e-05 7.06e-06 4.33e-05 6.6e-06 1.27e-05 1.05e-05 2.67e-05 1.93e-05 1.74e-05 1.6e-06 1.91e-06 6.43e-06 1.11e-05 4.56e-06 2.54e-06 2.96e-06 3.75e-06 3.04e-06 1.67e-06 3.61e-05 2.86e-06 4.37e-07 2.07e-06 3.36e-06 3.8e-06 1.4e-06 1.46e-06
ENSG00000110921 MVK -36663 3.36e-05 3.46e-05 6.31e-06 1.61e-05 6.33e-06 1.5e-05 4.47e-05 5.44e-06 3.38e-05 1.69e-05 4.29e-05 1.79e-05 5.27e-05 1.48e-05 7.14e-06 2.14e-05 1.73e-05 2.61e-05 8.31e-06 7.1e-06 1.65e-05 3.5e-05 3.2e-05 9.31e-06 5.06e-05 8.39e-06 1.65e-05 1.4e-05 3.36e-05 2.45e-05 2.3e-05 1.63e-06 2.62e-06 7.75e-06 1.27e-05 5.78e-06 3.22e-06 3.2e-06 5.08e-06 3.56e-06 1.7e-06 4.15e-05 3.58e-06 4.16e-07 2.67e-06 4.53e-06 4.38e-06 1.76e-06 1.53e-06
ENSG00000122970 \N -587743 1.47e-06 1.66e-06 2.54e-07 1.25e-06 3.81e-07 6.44e-07 1.51e-06 3.63e-07 1.72e-06 7.13e-07 2.04e-06 7.92e-07 2.67e-06 8.5e-07 3.63e-07 1.11e-06 9.15e-07 1.09e-06 5.86e-07 4.81e-07 7.46e-07 1.92e-06 1.19e-06 6.54e-07 2.56e-06 8.72e-07 1.02e-06 1e-06 1.71e-06 1.2e-06 7.35e-07 3.07e-07 2.15e-07 6.16e-07 6.99e-07 4.77e-07 7.36e-07 2.71e-07 4.26e-07 2.1e-07 3.05e-07 3.17e-06 4.23e-07 1.69e-07 2.16e-07 3.06e-07 2.46e-07 5.39e-08 1.04e-07
ENSG00000139428 MMAB -36988 3.32e-05 3.46e-05 6.31e-06 1.61e-05 6.33e-06 1.48e-05 4.47e-05 5.4e-06 3.36e-05 1.66e-05 4.26e-05 1.79e-05 5.27e-05 1.48e-05 7.12e-06 2.14e-05 1.73e-05 2.59e-05 8.31e-06 7.07e-06 1.64e-05 3.5e-05 3.2e-05 9.15e-06 5.03e-05 8.39e-06 1.65e-05 1.39e-05 3.36e-05 2.41e-05 2.26e-05 1.63e-06 2.62e-06 7.77e-06 1.27e-05 5.85e-06 3.22e-06 3.2e-06 5.03e-06 3.57e-06 1.7e-06 4.15e-05 3.55e-06 4.16e-07 2.67e-06 4.53e-06 4.38e-06 1.72e-06 1.53e-06
ENSG00000174456 C12orf76 -537042 1.97e-06 2.37e-06 2.46e-07 1.53e-06 4.51e-07 7.71e-07 1.27e-06 4.39e-07 1.76e-06 7.38e-07 1.91e-06 9.49e-07 2.84e-06 1.24e-06 4.63e-07 1.19e-06 1.11e-06 1.21e-06 7.13e-07 6.52e-07 6.35e-07 1.92e-06 1.54e-06 5.57e-07 3.36e-06 1.06e-06 1.12e-06 1.12e-06 1.69e-06 1.26e-06 9.97e-07 2.31e-07 2.54e-07 5.91e-07 9.03e-07 5.24e-07 6.87e-07 3.37e-07 4.87e-07 2.27e-07 3.03e-07 3.43e-06 6.14e-07 1.81e-07 2.83e-07 3.15e-07 2.8e-07 5.95e-08 1.46e-07
ENSG00000241413 \N -329917 4.51e-06 5.1e-06 7.32e-07 3.1e-06 1.2e-06 1.72e-06 3.59e-06 9.54e-07 5.15e-06 2.48e-06 5.26e-06 3.11e-06 7.2e-06 1.92e-06 1.33e-06 3.78e-06 2.04e-06 3.05e-06 1.57e-06 9.85e-07 3e-06 4.86e-06 3.8e-06 1.8e-06 8.28e-06 1.85e-06 2.47e-06 1.78e-06 4.21e-06 3.64e-06 2.85e-06 5.09e-07 6e-07 1.8e-06 2.09e-06 9.01e-07 9.3e-07 4.75e-07 1.25e-06 4.28e-07 2.8e-07 8.39e-06 5.26e-07 1.33e-07 4.13e-07 1.34e-06 8.4e-07 2.62e-07 1.74e-07
ENSG00000274598 \N 702208 1.24e-06 1e-06 2.63e-07 1.14e-06 3.2e-07 5.87e-07 1.32e-06 3.22e-07 1.44e-06 5.15e-07 1.5e-06 6.06e-07 2.1e-06 2.82e-07 5.5e-07 9.19e-07 8.43e-07 6.25e-07 7.14e-07 6.55e-07 6.36e-07 1.63e-06 8.84e-07 4.79e-07 2.25e-06 5.38e-07 9.05e-07 7.51e-07 1.32e-06 1.13e-06 7.05e-07 1.55e-07 1.49e-07 5.6e-07 5.85e-07 4.09e-07 6.1e-07 1.25e-07 1.71e-07 2.45e-07 2.98e-07 2.12e-06 3.34e-07 1.96e-07 1.92e-07 2.17e-07 2.38e-07 8.51e-08 5.32e-08