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Genes within 1Mb (chr1:64727780:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -339974 sc-eQTL 2.92e-01 -0.0523 0.0495 0.451 B L1
ENSG00000213625 LEPROT -692807 sc-eQTL 6.52e-01 0.0287 0.0634 0.451 B L1
ENSG00000158966 CACHD1 257651 sc-eQTL 3.88e-01 0.0411 0.0475 0.451 CD4T L1
ENSG00000162434 JAK1 -339974 sc-eQTL 9.02e-02 0.0843 0.0495 0.451 CD4T L1
ENSG00000213625 LEPROT -692807 sc-eQTL 4.32e-01 0.0613 0.0778 0.451 CD4T L1
ENSG00000116678 LEPR -692872 sc-eQTL 6.91e-01 0.0326 0.0819 0.451 CD8T L1
ENSG00000158966 CACHD1 257651 sc-eQTL 4.66e-01 -0.0294 0.0402 0.451 CD8T L1
ENSG00000162434 JAK1 -339974 sc-eQTL 7.32e-01 -0.0218 0.0635 0.451 CD8T L1
ENSG00000213625 LEPROT -692807 sc-eQTL 6.79e-01 0.0348 0.0841 0.451 CD8T L1
ENSG00000116678 LEPR -692872 sc-eQTL 6.35e-01 -0.0388 0.0816 0.453 DC L1
ENSG00000162433 AK4 -419769 sc-eQTL 2.48e-01 -0.0792 0.0684 0.453 DC L1
ENSG00000162434 JAK1 -339974 sc-eQTL 1.28e-01 -0.0867 0.0567 0.453 DC L1
ENSG00000162437 RAVER2 -17315 sc-eQTL 2.31e-01 -0.0876 0.0729 0.453 DC L1
ENSG00000213625 LEPROT -692807 sc-eQTL 7.72e-02 -0.143 0.0803 0.453 DC L1
ENSG00000285079 AL513493.1 -976182 sc-eQTL 1.84e-01 -0.0578 0.0434 0.453 DC L1
ENSG00000116678 LEPR -692872 sc-eQTL 5.11e-01 -0.0532 0.0808 0.451 Mono L1
ENSG00000162433 AK4 -419769 sc-eQTL 3.18e-01 -0.0738 0.0738 0.451 Mono L1
ENSG00000162434 JAK1 -339974 sc-eQTL 6.03e-01 -0.0275 0.0528 0.451 Mono L1
ENSG00000213625 LEPROT -692807 sc-eQTL 1.98e-01 0.0672 0.0521 0.451 Mono L1
ENSG00000116678 LEPR -692872 sc-eQTL 5.74e-01 -0.0442 0.0784 0.451 NK L1
ENSG00000162434 JAK1 -339974 sc-eQTL 3.26e-02 0.0789 0.0367 0.451 NK L1
ENSG00000213625 LEPROT -692807 sc-eQTL 8.15e-01 -0.0198 0.0845 0.451 NK L1
ENSG00000162434 JAK1 -339974 sc-eQTL 6.65e-01 0.0235 0.0543 0.451 Other_T L1
ENSG00000162437 RAVER2 -17315 sc-eQTL 6.01e-03 -0.215 0.0775 0.451 Other_T L1
ENSG00000213625 LEPROT -692807 sc-eQTL 3.37e-01 -0.0819 0.0851 0.451 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -339974 sc-eQTL 3.36e-01 0.0812 0.0841 0.454 B_Activated L2
ENSG00000213625 LEPROT -692807 sc-eQTL 7.26e-01 0.0309 0.0881 0.454 B_Activated L2
ENSG00000162434 JAK1 -339974 sc-eQTL 4.11e-01 -0.0583 0.0708 0.453 B_Intermediate L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.53e-01 -0.0773 0.083 0.453 B_Intermediate L2
ENSG00000162434 JAK1 -339974 sc-eQTL 4.32e-01 0.0561 0.0713 0.455 B_Memory L2
ENSG00000213625 LEPROT -692807 sc-eQTL 5.32e-01 0.0519 0.0829 0.455 B_Memory L2
ENSG00000162434 JAK1 -339974 sc-eQTL 6.86e-02 -0.115 0.0626 0.451 B_Naive1 L2
ENSG00000213625 LEPROT -692807 sc-eQTL 7.35e-01 -0.0279 0.0823 0.451 B_Naive1 L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.80e-01 0.0101 0.0671 0.453 B_Naive2 L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.71e-01 0.0724 0.0808 0.453 B_Naive2 L2
ENSG00000158966 CACHD1 257651 sc-eQTL 5.47e-01 -0.0189 0.0314 0.45 CD4_CTL L2
ENSG00000162434 JAK1 -339974 sc-eQTL 4.00e-01 -0.0652 0.0773 0.45 CD4_CTL L2
ENSG00000213625 LEPROT -692807 sc-eQTL 7.24e-01 -0.0315 0.089 0.45 CD4_CTL L2
ENSG00000158966 CACHD1 257651 sc-eQTL 5.73e-01 0.0268 0.0475 0.451 CD4_Naive L2
ENSG00000162434 JAK1 -339974 sc-eQTL 3.71e-02 0.101 0.048 0.451 CD4_Naive L2
ENSG00000213625 LEPROT -692807 sc-eQTL 7.76e-01 0.0224 0.0786 0.451 CD4_Naive L2
ENSG00000158966 CACHD1 257651 sc-eQTL 9.77e-01 -0.00196 0.0676 0.451 CD4_TCM L2
ENSG00000162434 JAK1 -339974 sc-eQTL 1.13e-01 0.0876 0.055 0.451 CD4_TCM L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.61e-01 0.0732 0.08 0.451 CD4_TCM L2
ENSG00000158966 CACHD1 257651 sc-eQTL 1.14e-01 -0.0802 0.0505 0.451 CD4_TEM L2
ENSG00000162434 JAK1 -339974 sc-eQTL 9.94e-01 0.000558 0.0723 0.451 CD4_TEM L2
ENSG00000213625 LEPROT -692807 sc-eQTL 7.48e-01 -0.0276 0.0858 0.451 CD4_TEM L2
ENSG00000116678 LEPR -692872 sc-eQTL 9.07e-01 -0.00939 0.08 0.451 CD8_CTL L2
ENSG00000158966 CACHD1 257651 sc-eQTL 6.77e-01 -0.015 0.036 0.451 CD8_CTL L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.78e-02 -0.114 0.0667 0.451 CD8_CTL L2
ENSG00000213625 LEPROT -692807 sc-eQTL 8.10e-01 0.0198 0.0821 0.451 CD8_CTL L2
ENSG00000116678 LEPR -692872 sc-eQTL 6.95e-01 0.0316 0.0806 0.451 CD8_Naive L2
ENSG00000158966 CACHD1 257651 sc-eQTL 4.39e-01 -0.0432 0.0558 0.451 CD8_Naive L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.27e-01 0.0147 0.0672 0.451 CD8_Naive L2
ENSG00000213625 LEPROT -692807 sc-eQTL 2.17e-01 -0.102 0.082 0.451 CD8_Naive L2
ENSG00000116678 LEPR -692872 sc-eQTL 8.23e-01 0.0181 0.0805 0.456 CD8_TCM L2
ENSG00000158966 CACHD1 257651 sc-eQTL 7.28e-01 -0.0151 0.0435 0.456 CD8_TCM L2
ENSG00000162434 JAK1 -339974 sc-eQTL 5.46e-01 -0.0423 0.0699 0.456 CD8_TCM L2
ENSG00000213625 LEPROT -692807 sc-eQTL 6.05e-01 0.0452 0.0872 0.456 CD8_TCM L2
ENSG00000116678 LEPR -692872 sc-eQTL 6.95e-01 0.0294 0.0749 0.463 CD8_TEM L2
ENSG00000158966 CACHD1 257651 sc-eQTL 9.81e-01 0.000422 0.0179 0.463 CD8_TEM L2
ENSG00000162434 JAK1 -339974 sc-eQTL 2.23e-01 0.103 0.0844 0.463 CD8_TEM L2
ENSG00000213625 LEPROT -692807 sc-eQTL 1.19e-01 0.136 0.0867 0.463 CD8_TEM L2
ENSG00000162434 JAK1 -339974 sc-eQTL 6.29e-01 -0.0354 0.0732 0.452 MAIT L2
ENSG00000162437 RAVER2 -17315 sc-eQTL 4.71e-01 -0.0562 0.0779 0.452 MAIT L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.72e-01 -0.0753 0.0842 0.452 MAIT L2
ENSG00000116678 LEPR -692872 sc-eQTL 1.21e-01 -0.121 0.0776 0.444 NK_CD56bright L2
ENSG00000162434 JAK1 -339974 sc-eQTL 1.06e-01 0.0863 0.0531 0.444 NK_CD56bright L2
ENSG00000213625 LEPROT -692807 sc-eQTL 8.63e-01 -0.0152 0.0878 0.444 NK_CD56bright L2
ENSG00000116678 LEPR -692872 sc-eQTL 5.04e-01 -0.0556 0.083 0.45 NK_CD56dim L2
ENSG00000162434 JAK1 -339974 sc-eQTL 2.54e-02 0.0966 0.0429 0.45 NK_CD56dim L2
ENSG00000213625 LEPROT -692807 sc-eQTL 2.96e-01 -0.0919 0.0876 0.45 NK_CD56dim L2
ENSG00000116678 LEPR -692872 sc-eQTL 8.93e-01 -0.0101 0.0744 0.45 NK_HLA L2
ENSG00000162434 JAK1 -339974 sc-eQTL 6.29e-01 0.0281 0.0579 0.45 NK_HLA L2
ENSG00000213625 LEPROT -692807 sc-eQTL 5.97e-01 0.0475 0.0898 0.45 NK_HLA L2
ENSG00000116678 LEPR -692872 sc-eQTL 9.66e-01 -0.00343 0.0793 0.45 NK_cytokine L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.34e-02 0.0798 0.0458 0.45 NK_cytokine L2
ENSG00000213625 LEPROT -692807 sc-eQTL 4.74e-01 -0.0601 0.0839 0.45 NK_cytokine L2
ENSG00000162434 JAK1 -339974 sc-eQTL 1.37e-01 0.117 0.0779 0.422 PB L2
ENSG00000213625 LEPROT -692807 sc-eQTL 8.74e-01 -0.0175 0.11 0.422 PB L2
ENSG00000162434 JAK1 -339974 sc-eQTL 4.20e-02 0.11 0.0536 0.446 Pro_T L2
ENSG00000162437 RAVER2 -17315 sc-eQTL 5.17e-01 -0.0463 0.0714 0.446 Pro_T L2
ENSG00000213625 LEPROT -692807 sc-eQTL 8.84e-01 -0.0123 0.0843 0.446 Pro_T L2
ENSG00000158966 CACHD1 257651 sc-eQTL 8.36e-01 -0.0132 0.0638 0.451 Treg L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.61e-01 0.0119 0.068 0.451 Treg L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.37e-01 0.0847 0.088 0.451 Treg L2
ENSG00000116678 LEPR -692872 sc-eQTL 5.05e-01 -0.057 0.0854 0.444 cDC L2
ENSG00000162433 AK4 -419769 sc-eQTL 6.02e-01 -0.0394 0.0755 0.444 cDC L2
ENSG00000162434 JAK1 -339974 sc-eQTL 2.10e-01 -0.0883 0.0702 0.444 cDC L2
ENSG00000162437 RAVER2 -17315 sc-eQTL 2.46e-01 -0.0899 0.0772 0.444 cDC L2
ENSG00000213625 LEPROT -692807 sc-eQTL 6.66e-01 -0.0371 0.0859 0.444 cDC L2
ENSG00000285079 AL513493.1 -976182 sc-eQTL 7.69e-01 0.00909 0.0309 0.444 cDC L2
ENSG00000116678 LEPR -692872 sc-eQTL 9.38e-01 -0.0064 0.0821 0.451 cMono_IL1B L2
ENSG00000162433 AK4 -419769 sc-eQTL 8.13e-01 -0.0179 0.0756 0.451 cMono_IL1B L2
ENSG00000162434 JAK1 -339974 sc-eQTL 6.34e-02 -0.127 0.0682 0.451 cMono_IL1B L2
ENSG00000213625 LEPROT -692807 sc-eQTL 1.83e-01 0.0739 0.0553 0.451 cMono_IL1B L2
ENSG00000116678 LEPR -692872 sc-eQTL 1.55e-01 -0.114 0.0801 0.451 cMono_S100A L2
ENSG00000162433 AK4 -419769 sc-eQTL 3.20e-01 -0.076 0.0762 0.451 cMono_S100A L2
ENSG00000162434 JAK1 -339974 sc-eQTL 6.67e-01 0.0303 0.0704 0.451 cMono_S100A L2
ENSG00000213625 LEPROT -692807 sc-eQTL 4.52e-01 -0.0496 0.0658 0.451 cMono_S100A L2
ENSG00000162434 JAK1 -339974 sc-eQTL 9.91e-01 0.00105 0.0955 0.473 gdT L2
ENSG00000162437 RAVER2 -17315 sc-eQTL 3.30e-02 -0.178 0.0827 0.473 gdT L2
ENSG00000213625 LEPROT -692807 sc-eQTL 8.11e-02 -0.175 0.0996 0.473 gdT L2
ENSG00000116678 LEPR -692872 sc-eQTL 5.49e-01 0.0476 0.0794 0.449 intMono L2
ENSG00000162433 AK4 -419769 sc-eQTL 3.37e-01 -0.0719 0.0746 0.449 intMono L2
ENSG00000162434 JAK1 -339974 sc-eQTL 7.58e-01 0.0214 0.0692 0.449 intMono L2
ENSG00000213625 LEPROT -692807 sc-eQTL 1.86e-01 0.0881 0.0664 0.449 intMono L2
ENSG00000116678 LEPR -692872 sc-eQTL 8.11e-01 0.0189 0.079 0.457 ncMono L2
ENSG00000162433 AK4 -419769 sc-eQTL 6.34e-01 0.0335 0.0704 0.457 ncMono L2
ENSG00000162434 JAK1 -339974 sc-eQTL 8.84e-01 0.0083 0.057 0.457 ncMono L2
ENSG00000213625 LEPROT -692807 sc-eQTL 2.07e-01 0.102 0.0805 0.457 ncMono L2
ENSG00000116678 LEPR -692872 sc-eQTL 7.32e-01 -0.0291 0.0848 0.475 pDC L2
ENSG00000162433 AK4 -419769 sc-eQTL 8.27e-02 0.0957 0.0548 0.475 pDC L2
ENSG00000162434 JAK1 -339974 sc-eQTL 7.35e-01 -0.0251 0.0738 0.475 pDC L2
ENSG00000162437 RAVER2 -17315 sc-eQTL 5.23e-01 -0.0532 0.0831 0.475 pDC L2
ENSG00000213625 LEPROT -692807 sc-eQTL 3.41e-02 -0.193 0.0903 0.475 pDC L2
ENSG00000285079 AL513493.1 -976182 sc-eQTL 1.50e-01 -0.0994 0.0687 0.475 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000162434 JAK1 -339974 sc-eQTL 8.72e-01 0.0102 0.063 0.451 B_Memory LOneK1K
ENSG00000213625 LEPROT -692807 sc-eQTL 7.64e-01 0.0243 0.0809 0.451 B_Memory LOneK1K
ENSG00000162434 JAK1 -339974 sc-eQTL 1.16e-01 -0.0961 0.0609 0.451 B_Naive LOneK1K
ENSG00000213625 LEPROT -692807 sc-eQTL 8.14e-01 0.0182 0.0774 0.451 B_Naive LOneK1K
ENSG00000116678 LEPR -692872 sc-eQTL 4.66e-01 -0.0582 0.0797 0.451 CD14_Mono LOneK1K
ENSG00000162433 AK4 -419769 sc-eQTL 3.07e-01 -0.078 0.0762 0.451 CD14_Mono LOneK1K
ENSG00000162434 JAK1 -339974 sc-eQTL 1.92e-01 -0.0834 0.0637 0.451 CD14_Mono LOneK1K
ENSG00000213625 LEPROT -692807 sc-eQTL 7.71e-01 0.0156 0.0535 0.451 CD14_Mono LOneK1K
ENSG00000116678 LEPR -692872 sc-eQTL 8.41e-01 0.0162 0.081 0.453 CD16_Mono LOneK1K
ENSG00000162433 AK4 -419769 sc-eQTL 5.09e-01 0.0485 0.0732 0.453 CD16_Mono LOneK1K
ENSG00000162434 JAK1 -339974 sc-eQTL 4.48e-01 0.0375 0.0493 0.453 CD16_Mono LOneK1K
ENSG00000213625 LEPROT -692807 sc-eQTL 2.38e-02 0.155 0.068 0.453 CD16_Mono LOneK1K
ENSG00000116678 LEPR -692872 sc-eQTL 6.26e-01 -0.0395 0.0809 0.45 NK_CD56dim LOneK1K
ENSG00000162434 JAK1 -339974 sc-eQTL 5.23e-02 0.0734 0.0376 0.45 NK_CD56dim LOneK1K
ENSG00000213625 LEPROT -692807 sc-eQTL 5.49e-01 -0.0503 0.0838 0.45 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162434 JAK1 -238769 eQTL 0.000632 0.0507 0.0148 0.0 0.0 0.447
ENSG00000162437 RAVER2 -17315 eQTL 3.68e-10 -0.139 0.0219 0.0 0.0 0.447
ENSG00000233877 AL606517.1 -214199 eQTL 0.0317 0.0691 0.0321 0.0 0.0 0.447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162434 JAK1 -238769 1.6e-06 1.53e-06 2.98e-07 1.26e-06 4.85e-07 6.48e-07 1.19e-06 4.21e-07 1.75e-06 7.41e-07 2.02e-06 1.29e-06 2.62e-06 4.13e-07 3.41e-07 1.07e-06 1.06e-06 1.29e-06 5.23e-07 6.44e-07 6.02e-07 1.96e-06 1.58e-06 8.41e-07 2.43e-06 1.1e-06 1e-06 9.91e-07 1.75e-06 1.4e-06 7.86e-07 2.83e-07 3.76e-07 7.48e-07 6.86e-07 6.76e-07 6.99e-07 3.43e-07 4.83e-07 2.27e-07 3.45e-07 2.14e-06 3.37e-07 1.32e-07 3.6e-07 3.24e-07 4.03e-07 2.49e-07 2.9e-07
ENSG00000162437 RAVER2 -17315 1.6e-05 1.9e-05 4.6e-06 1.22e-05 4.49e-06 1.03e-05 2.77e-05 3.72e-06 1.92e-05 9.88e-06 2.48e-05 9.57e-06 3.63e-05 8.62e-06 5.36e-06 1.18e-05 1.13e-05 1.84e-05 7.21e-06 6.05e-06 1.08e-05 2.08e-05 2.09e-05 8.98e-06 3.21e-05 6.27e-06 8.81e-06 8.71e-06 2.34e-05 2.81e-05 1.29e-05 1.6e-06 2.75e-06 7.58e-06 9.03e-06 5.85e-06 3.59e-06 3.19e-06 5.18e-06 3.57e-06 1.85e-06 2.44e-05 2.68e-06 5.02e-07 2.59e-06 3.29e-06 3.74e-06 1.69e-06 1.52e-06
ENSG00000233877 AL606517.1 -214199 1.87e-06 2.3e-06 3.08e-07 1.37e-06 4.69e-07 7.23e-07 1.3e-06 6.11e-07 1.74e-06 8.08e-07 1.97e-06 1.47e-06 3.11e-06 8.5e-07 5.05e-07 1.27e-06 1.01e-06 1.68e-06 6.58e-07 1.05e-06 9e-07 2.25e-06 1.82e-06 9.56e-07 2.58e-06 1.3e-06 1.19e-06 1.32e-06 1.81e-06 1.63e-06 9.07e-07 2.69e-07 4.61e-07 1.25e-06 8.59e-07 8.58e-07 7.42e-07 4.02e-07 8.03e-07 3.28e-07 2.29e-07 2.7e-06 4.14e-07 1.75e-07 3.48e-07 3.14e-07 5.64e-07 2.2e-07 2.12e-07