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Genes within 1Mb (chr1:64120291:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 526880 sc-eQTL 7.08e-01 -0.0747 0.199 0.95 CD4_CTL L2
ENSG00000088035 ALG6 752716 sc-eQTL 5.92e-01 0.113 0.211 0.95 CD4_CTL L2
ENSG00000142856 ITGB3BP 526570 sc-eQTL 9.28e-02 -0.342 0.203 0.95 CD4_CTL L2
ENSG00000158966 CACHD1 -349838 sc-eQTL 7.60e-01 0.0227 0.0741 0.95 CD4_CTL L2
ENSG00000162434 JAK1 -947463 sc-eQTL 3.49e-02 -0.384 0.181 0.95 CD4_CTL L2
ENSG00000203965 EFCAB7 596919 sc-eQTL 3.85e-01 -0.168 0.193 0.95 CD4_CTL L2
ENSG00000079739 PGM1 526880 sc-eQTL 1.52e-01 -0.295 0.205 0.95 CD8_TEM L2
ENSG00000088035 ALG6 752716 sc-eQTL 4.35e-01 -0.162 0.207 0.95 CD8_TEM L2
ENSG00000142856 ITGB3BP 526570 sc-eQTL 4.41e-01 0.161 0.208 0.95 CD8_TEM L2
ENSG00000158966 CACHD1 -349838 sc-eQTL 9.28e-01 0.00383 0.0425 0.95 CD8_TEM L2
ENSG00000162434 JAK1 -947463 sc-eQTL 8.11e-01 0.0482 0.201 0.95 CD8_TEM L2
ENSG00000203965 EFCAB7 596919 sc-eQTL 1.81e-01 -0.27 0.201 0.95 CD8_TEM L2
ENSG00000079739 PGM1 526880 sc-eQTL 5.57e-01 0.123 0.209 0.95 NK_HLA L2
ENSG00000088035 ALG6 752716 sc-eQTL 4.03e-01 0.181 0.216 0.95 NK_HLA L2
ENSG00000142856 ITGB3BP 526570 sc-eQTL 3.12e-01 0.204 0.202 0.95 NK_HLA L2
ENSG00000162434 JAK1 -947463 sc-eQTL 7.58e-01 -0.0416 0.135 0.95 NK_HLA L2
ENSG00000203965 EFCAB7 596919 sc-eQTL 3.28e-01 0.188 0.192 0.95 NK_HLA L2
ENSG00000079739 PGM1 526880 sc-eQTL 6.18e-02 0.405 0.215 0.944 PB L2
ENSG00000088035 ALG6 752716 sc-eQTL 1.33e-01 0.344 0.227 0.944 PB L2
ENSG00000142856 ITGB3BP 526570 sc-eQTL 4.39e-01 -0.165 0.213 0.944 PB L2
ENSG00000162434 JAK1 -947463 sc-eQTL 1.97e-01 0.207 0.16 0.944 PB L2
ENSG00000203965 EFCAB7 596919 sc-eQTL 6.84e-01 0.0953 0.234 0.944 PB L2
ENSG00000079739 PGM1 526880 sc-eQTL 2.20e-01 0.26 0.211 0.945 gdT L2
ENSG00000088035 ALG6 752716 sc-eQTL 2.23e-01 0.276 0.225 0.945 gdT L2
ENSG00000142856 ITGB3BP 526570 sc-eQTL 1.27e-01 0.343 0.223 0.945 gdT L2
ENSG00000162434 JAK1 -947463 sc-eQTL 9.60e-01 -0.0114 0.226 0.945 gdT L2
ENSG00000162437 RAVER2 -624804 sc-eQTL 1.18e-01 0.311 0.197 0.945 gdT L2
ENSG00000203965 EFCAB7 596919 sc-eQTL 6.47e-01 0.101 0.221 0.945 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116652 DLEU2L 573209 eQTL 0.0506 -0.104 0.0532 0.00102 0.0 0.0589
ENSG00000233877 AL606517.1 -821688 eQTL 0.0481 0.129 0.0653 0.0 0.0 0.0589

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000233877 AL606517.1 -821688 3.21e-07 2.5e-07 8.55e-08 2.61e-07 1.06e-07 8.4e-08 2.86e-07 6.12e-08 2.12e-07 1.21e-07 2.62e-07 1.96e-07 3.6e-07 8.42e-08 1.12e-07 1.13e-07 5.73e-08 2.43e-07 9.69e-08 7.4e-08 1.33e-07 2.06e-07 2e-07 3.41e-08 3.27e-07 1.71e-07 1.31e-07 1.69e-07 1.4e-07 1.85e-07 1.78e-07 5.3e-08 4.76e-08 1.02e-07 1.01e-07 4.6e-08 5.76e-08 5.8e-08 4.99e-08 7.65e-08 4.78e-08 2.71e-07 3.13e-08 1.99e-08 7.93e-08 9.44e-09 7e-08 2.8e-09 4.82e-08