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Genes within 1Mb (chr1:64119128:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 525717 sc-eQTL 7.08e-01 0.0747 0.199 0.05 CD4_CTL L2
ENSG00000088035 ALG6 751553 sc-eQTL 5.92e-01 -0.113 0.211 0.05 CD4_CTL L2
ENSG00000142856 ITGB3BP 525407 sc-eQTL 9.28e-02 0.342 0.203 0.05 CD4_CTL L2
ENSG00000158966 CACHD1 -351001 sc-eQTL 7.60e-01 -0.0227 0.0741 0.05 CD4_CTL L2
ENSG00000162434 JAK1 -948626 sc-eQTL 3.49e-02 0.384 0.181 0.05 CD4_CTL L2
ENSG00000203965 EFCAB7 595756 sc-eQTL 3.85e-01 0.168 0.193 0.05 CD4_CTL L2
ENSG00000079739 PGM1 525717 sc-eQTL 1.52e-01 0.295 0.205 0.05 CD8_TEM L2
ENSG00000088035 ALG6 751553 sc-eQTL 4.35e-01 0.162 0.207 0.05 CD8_TEM L2
ENSG00000142856 ITGB3BP 525407 sc-eQTL 4.41e-01 -0.161 0.208 0.05 CD8_TEM L2
ENSG00000158966 CACHD1 -351001 sc-eQTL 9.28e-01 -0.00383 0.0425 0.05 CD8_TEM L2
ENSG00000162434 JAK1 -948626 sc-eQTL 8.11e-01 -0.0482 0.201 0.05 CD8_TEM L2
ENSG00000203965 EFCAB7 595756 sc-eQTL 1.81e-01 0.27 0.201 0.05 CD8_TEM L2
ENSG00000079739 PGM1 525717 sc-eQTL 5.57e-01 -0.123 0.209 0.05 NK_HLA L2
ENSG00000088035 ALG6 751553 sc-eQTL 4.03e-01 -0.181 0.216 0.05 NK_HLA L2
ENSG00000142856 ITGB3BP 525407 sc-eQTL 3.12e-01 -0.204 0.202 0.05 NK_HLA L2
ENSG00000162434 JAK1 -948626 sc-eQTL 7.58e-01 0.0416 0.135 0.05 NK_HLA L2
ENSG00000203965 EFCAB7 595756 sc-eQTL 3.28e-01 -0.188 0.192 0.05 NK_HLA L2
ENSG00000079739 PGM1 525717 sc-eQTL 6.18e-02 -0.405 0.215 0.056 PB L2
ENSG00000088035 ALG6 751553 sc-eQTL 1.33e-01 -0.344 0.227 0.056 PB L2
ENSG00000142856 ITGB3BP 525407 sc-eQTL 4.39e-01 0.165 0.213 0.056 PB L2
ENSG00000162434 JAK1 -948626 sc-eQTL 1.97e-01 -0.207 0.16 0.056 PB L2
ENSG00000203965 EFCAB7 595756 sc-eQTL 6.84e-01 -0.0953 0.234 0.056 PB L2
ENSG00000079739 PGM1 525717 sc-eQTL 2.20e-01 -0.26 0.211 0.055 gdT L2
ENSG00000088035 ALG6 751553 sc-eQTL 2.23e-01 -0.276 0.225 0.055 gdT L2
ENSG00000142856 ITGB3BP 525407 sc-eQTL 1.27e-01 -0.343 0.223 0.055 gdT L2
ENSG00000162434 JAK1 -948626 sc-eQTL 9.60e-01 0.0114 0.226 0.055 gdT L2
ENSG00000162437 RAVER2 -625967 sc-eQTL 1.18e-01 -0.311 0.197 0.055 gdT L2
ENSG00000203965 EFCAB7 595756 sc-eQTL 6.47e-01 -0.101 0.221 0.055 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116652 DLEU2L 572046 eQTL 0.05 0.105 0.0534 0.00103 0.0 0.0589
ENSG00000233877 AL606517.1 -822851 eQTL 0.0486 -0.129 0.0656 0.0 0.0 0.0589

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000233877 AL606517.1 -822851 3.07e-07 1.53e-07 6.28e-08 2.2e-07 1.02e-07 8.21e-08 2.1e-07 5.62e-08 1.59e-07 7.6e-08 1.61e-07 1.22e-07 2.05e-07 8.13e-08 5.62e-08 8.71e-08 4.45e-08 1.77e-07 7.09e-08 5.35e-08 1.22e-07 1.47e-07 1.62e-07 3.4e-08 2.02e-07 1.31e-07 1.19e-07 1.12e-07 1.31e-07 1.07e-07 1.21e-07 3.66e-08 3.13e-08 9.76e-08 3.57e-08 2.85e-08 5.51e-08 9.03e-08 6.41e-08 6.55e-08 4.89e-08 1.5e-07 5.22e-08 1.22e-08 3.55e-08 1.68e-08 1.11e-07 1.91e-09 4.69e-08