Genes within 1Mb (chr1:51957605:G:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 78668 sc-eQTL 9.80e-01 0.00474 0.193 0.056 PB L2
ENSG00000085832 EPS15 438339 sc-eQTL 2.19e-01 -0.339 0.274 0.056 PB L2
ENSG00000116157 GPX7 -644766 sc-eQTL 3.25e-02 0.454 0.21 0.056 PB L2
ENSG00000116171 SCP2 -969671 sc-eQTL 8.61e-01 0.0326 0.185 0.056 PB L2
ENSG00000117859 OSBPL9 380426 sc-eQTL 1.10e-01 0.366 0.227 0.056 PB L2
ENSG00000117862 TXNDC12 -98566 sc-eQTL 7.67e-01 0.0506 0.17 0.056 PB L2
ENSG00000121310 ECHDC2 -969607 sc-eQTL 5.60e-01 0.161 0.275 0.056 PB L2
ENSG00000123080 CDKN2C 996860 sc-eQTL 1.09e-01 0.313 0.194 0.056 PB L2
ENSG00000123091 RNF11 721332 sc-eQTL 4.69e-01 0.195 0.269 0.056 PB L2
ENSG00000134717 BTF3L4 -98594 sc-eQTL 2.12e-01 -0.343 0.273 0.056 PB L2
ENSG00000134744 TUT4 -595882 sc-eQTL 2.27e-01 0.305 0.251 0.056 PB L2
ENSG00000134748 PRPF38A -446997 sc-eQTL 7.96e-01 0.0616 0.238 0.056 PB L2
ENSG00000154222 CC2D1B -408588 sc-eQTL 4.09e-02 0.532 0.257 0.056 PB L2
ENSG00000162377 COA7 -740742 sc-eQTL 4.29e-01 -0.193 0.244 0.056 PB L2
ENSG00000162378 ZYG11B -768848 sc-eQTL 2.12e-01 -0.333 0.265 0.056 PB L2
ENSG00000182183 SHISAL2A -675563 sc-eQTL 7.43e-01 0.0729 0.222 0.056 PB L2
ENSG00000185104 FAF1 997338 sc-eQTL 1.74e-01 -0.356 0.26 0.056 PB L2
ENSG00000198841 KTI12 -76205 sc-eQTL 9.80e-02 0.414 0.248 0.056 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 78668 eQTL 1.15e-06 -0.07 0.0143 0.0 0.0 0.0765
ENSG00000116157 GPX7 -644766 eQTL 3.99e-23 0.448 0.044 0.0 0.0 0.0765
ENSG00000117859 OSBPL9 380426 eQTL 1.29e-16 0.206 0.0244 0.0 0.0 0.0765
ENSG00000117862 TXNDC12 -98566 eQTL 0.00143 -0.0662 0.0207 0.0 0.0 0.0765
ENSG00000134744 TUT4 -595882 eQTL 5.46e-03 0.0677 0.0243 0.00215 0.00131 0.0765
ENSG00000134748 PRPF38A -446997 eQTL 4.57e-02 -0.0701 0.035 0.0 0.0 0.0765
ENSG00000154222 CC2D1B -408588 eQTL 1.52e-24 0.324 0.0308 0.0 0.0 0.0765
ENSG00000198841 KTI12 -76211 eQTL 4.5e-06 -0.143 0.0309 0.0 0.0 0.0765
ENSG00000232027 AL671986.1 585335 eQTL 0.131 -0.0995 0.0658 0.00108 0.0 0.0765
ENSG00000236973 GAPDHP51 249468 eQTL 0.0231 0.126 0.0556 0.00154 0.0 0.0765


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 78668 7.14e-06 9.88e-06 2.27e-06 4.82e-06 1.46e-06 3.82e-06 9.67e-06 1.45e-06 6.77e-06 4.42e-06 1.06e-05 5.16e-06 1.34e-05 3.84e-06 2.21e-06 5.34e-06 5.34e-06 4.76e-06 2.64e-06 2.11e-06 3.51e-06 7.65e-06 5.84e-06 2.22e-06 1.31e-05 2.38e-06 4.48e-06 2.36e-06 7.21e-06 7.9e-06 4.69e-06 5.72e-07 7.14e-07 2.85e-06 4.62e-06 2.22e-06 1.2e-06 1.45e-06 1.38e-06 8.68e-07 4.94e-07 1.09e-05 1.42e-06 1.95e-07 6.98e-07 1.17e-06 1.08e-06 6.25e-07 3.29e-07
ENSG00000085831 \N 612489 2.8e-07 1.51e-07 5.14e-08 2.26e-07 8.92e-08 9.05e-08 1.6e-07 5.2e-08 1.44e-07 4.4e-08 1.67e-07 8.14e-08 1.53e-07 7.13e-08 6e-08 7.37e-08 4.12e-08 1.4e-07 6.07e-08 4.16e-08 1.25e-07 1.28e-07 1.39e-07 2.95e-08 1.55e-07 1.16e-07 1.07e-07 9.65e-08 1.05e-07 1e-07 9.92e-08 4.1e-08 3.68e-08 8.72e-08 3.97e-08 3.14e-08 6.24e-08 9.23e-08 7.52e-08 3.18e-08 4.41e-08 1.46e-07 5.2e-08 5.96e-09 6.92e-08 1.84e-08 1.19e-07 4.04e-09 5.04e-08
ENSG00000116157 GPX7 -644766 2.67e-07 1.42e-07 4.48e-08 2.26e-07 9.02e-08 9.91e-08 1.53e-07 5.19e-08 1.44e-07 4.38e-08 1.57e-07 7.78e-08 1.47e-07 6.76e-08 5.84e-08 7.17e-08 4.17e-08 1.27e-07 5.75e-08 4e-08 1.26e-07 1.27e-07 1.34e-07 3.42e-08 1.46e-07 1.14e-07 1.06e-07 9.36e-08 1.05e-07 1.07e-07 9.64e-08 3.71e-08 3.73e-08 8.11e-08 3.07e-08 3.53e-08 4.62e-08 9.61e-08 7.63e-08 3e-08 4.76e-08 1.33e-07 5.27e-08 5.54e-09 7.79e-08 1.83e-08 1.19e-07 4.09e-09 4.91e-08
ENSG00000117859 OSBPL9 380426 9.14e-07 8.33e-07 1.6e-07 4.15e-07 1.01e-07 2.16e-07 5.28e-07 7.52e-08 2.81e-07 1.11e-07 9.07e-07 2.04e-07 8.16e-07 1.48e-07 1.12e-07 1.49e-07 5.06e-07 4.11e-07 1.93e-07 1.32e-07 2.01e-07 2.86e-07 2.67e-07 1.36e-07 8.33e-07 2e-07 2.08e-07 2.13e-07 1.98e-07 5.67e-07 2.55e-07 4.23e-08 5.37e-08 1.64e-07 3.29e-07 1.48e-07 2.98e-07 6.46e-08 5.8e-08 7.78e-08 3.17e-08 5.44e-07 4.18e-08 1.99e-07 3.87e-08 1.25e-08 8.01e-08 0.0 4.99e-08
ENSG00000154222 CC2D1B -408588 7.76e-07 6.76e-07 1.12e-07 3.1e-07 1.03e-07 1.74e-07 4.25e-07 6.2e-08 2.38e-07 9.35e-08 6.39e-07 1.59e-07 6.08e-07 1.1e-07 7.79e-08 1.14e-07 3.13e-07 3.56e-07 1.51e-07 8.41e-08 1.86e-07 2.3e-07 2.2e-07 1.06e-07 6.18e-07 1.71e-07 1.72e-07 1.69e-07 1.48e-07 3.93e-07 1.93e-07 3.66e-08 4.49e-08 1.39e-07 3.68e-07 7.98e-08 1.91e-07 5.71e-08 6.21e-08 6.19e-08 5.1e-08 3.85e-07 2.16e-08 1.66e-07 3.07e-08 1.37e-08 9.34e-08 2.05e-09 5.02e-08
ENSG00000198841 KTI12 -76211 7.7e-06 1.02e-05 2.38e-06 4.96e-06 1.61e-06 4.02e-06 9.61e-06 1.49e-06 7.4e-06 4.38e-06 1.06e-05 5.16e-06 1.36e-05 3.74e-06 2.44e-06 5.6e-06 5.55e-06 5.13e-06 2.69e-06 2.23e-06 3.66e-06 7.51e-06 6.24e-06 2.3e-06 1.39e-05 2.49e-06 4.49e-06 2.34e-06 7.53e-06 7.98e-06 4.82e-06 5.84e-07 7.27e-07 2.99e-06 4.71e-06 2.21e-06 1.23e-06 1.6e-06 1.36e-06 8.7e-07 5.44e-07 1.16e-05 1.49e-06 1.97e-07 7.72e-07 1.25e-06 1.16e-06 6.66e-07 4.23e-07