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Genes within 1Mb (chr1:51918914:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 39977 sc-eQTL 7.63e-01 -0.071 0.235 0.054 B_Activated L2
ENSG00000085832 EPS15 399648 sc-eQTL 9.39e-01 -0.0172 0.223 0.054 B_Activated L2
ENSG00000116157 GPX7 -683457 sc-eQTL 6.25e-01 0.105 0.215 0.054 B_Activated L2
ENSG00000117859 OSBPL9 341735 sc-eQTL 9.15e-01 0.0249 0.232 0.054 B_Activated L2
ENSG00000117862 TXNDC12 -137257 sc-eQTL 4.89e-01 -0.153 0.221 0.054 B_Activated L2
ENSG00000123080 CDKN2C 958169 sc-eQTL 8.16e-01 0.0394 0.169 0.054 B_Activated L2
ENSG00000123091 RNF11 682641 sc-eQTL 1.83e-01 0.278 0.208 0.054 B_Activated L2
ENSG00000134717 BTF3L4 -137285 sc-eQTL 5.46e-01 -0.141 0.232 0.054 B_Activated L2
ENSG00000134744 TUT4 -634573 sc-eQTL 3.36e-01 0.208 0.216 0.054 B_Activated L2
ENSG00000134748 PRPF38A -485688 sc-eQTL 2.88e-01 0.233 0.218 0.054 B_Activated L2
ENSG00000154222 CC2D1B -447279 sc-eQTL 3.61e-01 -0.195 0.213 0.054 B_Activated L2
ENSG00000162377 COA7 -779433 sc-eQTL 4.50e-02 0.363 0.18 0.054 B_Activated L2
ENSG00000162378 ZYG11B -807539 sc-eQTL 5.67e-01 0.128 0.223 0.054 B_Activated L2
ENSG00000182183 SHISAL2A -714254 sc-eQTL 8.15e-01 0.046 0.196 0.054 B_Activated L2
ENSG00000185104 FAF1 958647 sc-eQTL 4.33e-01 -0.165 0.21 0.054 B_Activated L2
ENSG00000198841 KTI12 -114896 sc-eQTL 6.10e-01 0.0956 0.187 0.054 B_Activated L2
ENSG00000078618 NRDC 39977 sc-eQTL 5.40e-01 -0.132 0.215 0.05 CD4_CTL L2
ENSG00000085832 EPS15 399648 sc-eQTL 8.53e-01 -0.0354 0.191 0.05 CD4_CTL L2
ENSG00000116157 GPX7 -683457 sc-eQTL 8.58e-01 -0.0379 0.212 0.05 CD4_CTL L2
ENSG00000117859 OSBPL9 341735 sc-eQTL 3.99e-01 -0.188 0.222 0.05 CD4_CTL L2
ENSG00000117862 TXNDC12 -137257 sc-eQTL 7.63e-01 0.0631 0.208 0.05 CD4_CTL L2
ENSG00000123080 CDKN2C 958169 sc-eQTL 2.87e-01 0.227 0.213 0.05 CD4_CTL L2
ENSG00000123091 RNF11 682641 sc-eQTL 9.61e-01 -0.00978 0.201 0.05 CD4_CTL L2
ENSG00000134717 BTF3L4 -137285 sc-eQTL 8.80e-01 -0.0318 0.211 0.05 CD4_CTL L2
ENSG00000134744 TUT4 -634573 sc-eQTL 9.48e-02 0.332 0.198 0.05 CD4_CTL L2
ENSG00000134748 PRPF38A -485688 sc-eQTL 2.14e-01 -0.263 0.211 0.05 CD4_CTL L2
ENSG00000154222 CC2D1B -447279 sc-eQTL 9.87e-01 0.0034 0.211 0.05 CD4_CTL L2
ENSG00000157077 ZFYVE9 -223180 sc-eQTL 1.75e-01 0.264 0.194 0.05 CD4_CTL L2
ENSG00000162378 ZYG11B -807539 sc-eQTL 4.99e-01 -0.141 0.208 0.05 CD4_CTL L2
ENSG00000182183 SHISAL2A -714254 sc-eQTL 9.04e-01 0.0229 0.189 0.05 CD4_CTL L2
ENSG00000185104 FAF1 958647 sc-eQTL 8.60e-01 -0.0317 0.18 0.05 CD4_CTL L2
ENSG00000198841 KTI12 -114896 sc-eQTL 4.98e-01 -0.138 0.204 0.05 CD4_CTL L2
ENSG00000078618 NRDC 39977 sc-eQTL 7.20e-01 -0.0795 0.221 0.05 NK_HLA L2
ENSG00000085832 EPS15 399648 sc-eQTL 5.88e-01 -0.0914 0.169 0.05 NK_HLA L2
ENSG00000116157 GPX7 -683457 sc-eQTL 4.71e-01 -0.151 0.209 0.05 NK_HLA L2
ENSG00000117859 OSBPL9 341735 sc-eQTL 3.62e-01 0.187 0.205 0.05 NK_HLA L2
ENSG00000117862 TXNDC12 -137257 sc-eQTL 5.98e-01 -0.112 0.212 0.05 NK_HLA L2
ENSG00000123080 CDKN2C 958169 sc-eQTL 7.27e-01 -0.0708 0.202 0.05 NK_HLA L2
ENSG00000123091 RNF11 682641 sc-eQTL 7.89e-01 0.0535 0.2 0.05 NK_HLA L2
ENSG00000134717 BTF3L4 -137285 sc-eQTL 8.95e-01 0.0282 0.213 0.05 NK_HLA L2
ENSG00000134744 TUT4 -634573 sc-eQTL 8.16e-01 -0.0497 0.213 0.05 NK_HLA L2
ENSG00000134748 PRPF38A -485688 sc-eQTL 6.41e-01 0.1 0.214 0.05 NK_HLA L2
ENSG00000154222 CC2D1B -447279 sc-eQTL 3.42e-01 -0.212 0.222 0.05 NK_HLA L2
ENSG00000162377 COA7 -779433 sc-eQTL 8.27e-01 0.0416 0.19 0.05 NK_HLA L2
ENSG00000162378 ZYG11B -807539 sc-eQTL 2.14e-01 0.26 0.209 0.05 NK_HLA L2
ENSG00000182183 SHISAL2A -714254 sc-eQTL 8.03e-01 -0.053 0.212 0.05 NK_HLA L2
ENSG00000185104 FAF1 958647 sc-eQTL 9.13e-01 -0.0208 0.191 0.05 NK_HLA L2
ENSG00000198841 KTI12 -114896 sc-eQTL 3.74e-01 -0.186 0.209 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000085831 TTC39A 573798 eQTL 0.173 -0.0667 0.0489 0.001 0.0 0.0662
ENSG00000123091 RNF11 682641 eQTL 0.0434 -0.0531 0.0263 0.0 0.0 0.0662
ENSG00000182183 SHISAL2A -714254 eQTL 0.0177 0.0818 0.0344 0.0 0.0 0.0662
ENSG00000232027 AL671986.1 546644 eQTL 0.065 0.132 0.0716 0.00147 0.0 0.0662

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 \N 39977 1.15e-05 1.71e-05 2.59e-06 9.71e-06 2.42e-06 6.44e-06 1.97e-05 2.33e-06 1.55e-05 7.31e-06 2e-05 7.21e-06 2.93e-05 6.04e-06 4.27e-06 8.93e-06 7.86e-06 1.17e-05 4.18e-06 3.53e-06 6.77e-06 1.31e-05 1.36e-05 4.25e-06 2.55e-05 4.72e-06 7.6e-06 5.86e-06 1.59e-05 1.49e-05 1.12e-05 1.08e-06 1.31e-06 3.91e-06 6.46e-06 3.83e-06 1.77e-06 2.3e-06 2.2e-06 1.76e-06 9.49e-07 1.93e-05 1.57e-06 2.5e-07 8.1e-07 2.33e-06 2.11e-06 6.88e-07 5.68e-07
ENSG00000085831 TTC39A 573798 5.14e-07 4.93e-07 7.92e-08 3.95e-07 1.1e-07 1.57e-07 4.53e-07 9.78e-08 2.75e-07 1.78e-07 5.93e-07 2.33e-07 6.77e-07 1.1e-07 1.18e-07 1.39e-07 2.07e-07 3.44e-07 1.62e-07 8.25e-08 1.61e-07 2.76e-07 2.67e-07 1.17e-07 5.75e-07 2.01e-07 1.72e-07 1.97e-07 2.19e-07 4.51e-07 2.6e-07 5.99e-08 5.51e-08 1.21e-07 2.61e-07 8.17e-08 1.14e-07 6.78e-08 5.28e-08 5.72e-08 4.46e-08 4.82e-07 3.13e-08 1.8e-08 6.59e-08 1.35e-08 7.8e-08 2.71e-09 5.44e-08