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Genes within 1Mb (chr1:51910200:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 31263 sc-eQTL 4.01e-01 0.204 0.242 0.944 B_Activated L2
ENSG00000085832 EPS15 390934 sc-eQTL 1.40e-01 -0.339 0.228 0.944 B_Activated L2
ENSG00000116157 GPX7 -692171 sc-eQTL 7.68e-01 0.0656 0.222 0.944 B_Activated L2
ENSG00000117859 OSBPL9 333021 sc-eQTL 5.66e-01 -0.137 0.239 0.944 B_Activated L2
ENSG00000117862 TXNDC12 -145971 sc-eQTL 7.84e-01 0.0625 0.228 0.944 B_Activated L2
ENSG00000123080 CDKN2C 949455 sc-eQTL 2.40e-01 0.205 0.174 0.944 B_Activated L2
ENSG00000123091 RNF11 673927 sc-eQTL 2.81e-01 -0.232 0.215 0.944 B_Activated L2
ENSG00000134717 BTF3L4 -145999 sc-eQTL 5.89e-01 0.13 0.24 0.944 B_Activated L2
ENSG00000134744 TUT4 -643287 sc-eQTL 5.62e-01 -0.129 0.223 0.944 B_Activated L2
ENSG00000134748 PRPF38A -494402 sc-eQTL 2.97e-01 -0.236 0.225 0.944 B_Activated L2
ENSG00000154222 CC2D1B -455993 sc-eQTL 2.82e-01 0.237 0.22 0.944 B_Activated L2
ENSG00000162377 COA7 -788147 sc-eQTL 4.83e-02 -0.369 0.186 0.944 B_Activated L2
ENSG00000162378 ZYG11B -816253 sc-eQTL 9.17e-01 0.0241 0.23 0.944 B_Activated L2
ENSG00000182183 SHISAL2A -722968 sc-eQTL 2.70e-02 -0.445 0.199 0.944 B_Activated L2
ENSG00000185104 FAF1 949933 sc-eQTL 2.43e-01 -0.253 0.216 0.944 B_Activated L2
ENSG00000198841 KTI12 -123610 sc-eQTL 6.29e-01 0.0935 0.193 0.944 B_Activated L2
ENSG00000078618 NRDC 31263 sc-eQTL 2.15e-01 0.259 0.208 0.95 CD8_TEM L2
ENSG00000085832 EPS15 390934 sc-eQTL 2.63e-01 0.213 0.19 0.95 CD8_TEM L2
ENSG00000116157 GPX7 -692171 sc-eQTL 1.31e-01 -0.315 0.208 0.95 CD8_TEM L2
ENSG00000117859 OSBPL9 333021 sc-eQTL 9.87e-01 0.00353 0.224 0.95 CD8_TEM L2
ENSG00000117862 TXNDC12 -145971 sc-eQTL 9.92e-01 -0.00191 0.202 0.95 CD8_TEM L2
ENSG00000123080 CDKN2C 949455 sc-eQTL 6.38e-01 0.0995 0.211 0.95 CD8_TEM L2
ENSG00000123091 RNF11 673927 sc-eQTL 8.40e-01 0.0435 0.215 0.95 CD8_TEM L2
ENSG00000134717 BTF3L4 -145999 sc-eQTL 4.12e-01 -0.179 0.218 0.95 CD8_TEM L2
ENSG00000134744 TUT4 -643287 sc-eQTL 7.08e-02 -0.361 0.199 0.95 CD8_TEM L2
ENSG00000134748 PRPF38A -494402 sc-eQTL 9.52e-02 -0.348 0.207 0.95 CD8_TEM L2
ENSG00000154222 CC2D1B -455993 sc-eQTL 4.71e-01 -0.15 0.207 0.95 CD8_TEM L2
ENSG00000157077 ZFYVE9 -231894 sc-eQTL 2.59e-01 -0.213 0.188 0.95 CD8_TEM L2
ENSG00000162378 ZYG11B -816253 sc-eQTL 8.04e-01 -0.0527 0.212 0.95 CD8_TEM L2
ENSG00000182183 SHISAL2A -722968 sc-eQTL 6.69e-01 0.0859 0.201 0.95 CD8_TEM L2
ENSG00000185104 FAF1 949933 sc-eQTL 5.16e-01 0.137 0.211 0.95 CD8_TEM L2
ENSG00000198841 KTI12 -123610 sc-eQTL 9.40e-01 -0.0157 0.209 0.95 CD8_TEM L2
ENSG00000078618 NRDC 31263 sc-eQTL 9.40e-01 0.0143 0.189 0.941 PB L2
ENSG00000085832 EPS15 390934 sc-eQTL 4.40e-01 0.209 0.269 0.941 PB L2
ENSG00000116157 GPX7 -692171 sc-eQTL 7.77e-02 -0.368 0.207 0.941 PB L2
ENSG00000117859 OSBPL9 333021 sc-eQTL 8.95e-02 -0.38 0.222 0.941 PB L2
ENSG00000117862 TXNDC12 -145971 sc-eQTL 8.18e-01 -0.0384 0.167 0.941 PB L2
ENSG00000123080 CDKN2C 949455 sc-eQTL 1.28e-01 -0.291 0.19 0.941 PB L2
ENSG00000123091 RNF11 673927 sc-eQTL 2.73e-01 -0.289 0.262 0.941 PB L2
ENSG00000134717 BTF3L4 -145999 sc-eQTL 1.74e-01 0.365 0.267 0.941 PB L2
ENSG00000134744 TUT4 -643287 sc-eQTL 3.07e-01 -0.253 0.246 0.941 PB L2
ENSG00000134748 PRPF38A -494402 sc-eQTL 9.47e-01 -0.0157 0.233 0.941 PB L2
ENSG00000154222 CC2D1B -455993 sc-eQTL 4.32e-02 -0.515 0.252 0.941 PB L2
ENSG00000162377 COA7 -788147 sc-eQTL 4.03e-01 0.2 0.239 0.941 PB L2
ENSG00000162378 ZYG11B -816253 sc-eQTL 2.63e-01 0.293 0.26 0.941 PB L2
ENSG00000182183 SHISAL2A -722968 sc-eQTL 7.69e-01 -0.0641 0.217 0.941 PB L2
ENSG00000185104 FAF1 949933 sc-eQTL 1.27e-01 0.39 0.254 0.941 PB L2
ENSG00000198841 KTI12 -123610 sc-eQTL 6.14e-02 -0.458 0.242 0.941 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 31263 eQTL 2.46e-09 0.0804 0.0133 0.0 0.00206 0.0864
ENSG00000116157 GPX7 -692171 eQTL 4.52e-19 -0.38 0.0417 0.0 0.0 0.0864
ENSG00000117859 OSBPL9 333021 eQTL 2.3e-15 -0.185 0.023 0.0 0.0 0.0864
ENSG00000117862 TXNDC12 -145971 eQTL 0.00214 0.0598 0.0194 0.0 0.0 0.0864
ENSG00000123091 RNF11 673927 eQTL 0.0547 -0.0436 0.0227 0.00105 0.0 0.0864
ENSG00000134744 TUT4 -643287 eQTL 1.79e-03 -0.0714 0.0228 0.00393 0.00327 0.0864
ENSG00000154222 CC2D1B -455993 eQTL 6.630000000000001e-26 -0.313 0.0288 0.0 0.0 0.0864
ENSG00000198841 KTI12 -123616 eQTL 1.18e-05 0.128 0.0291 0.0 0.0 0.0864
ENSG00000232027 AL671986.1 537930 eQTL 0.0452 0.124 0.0618 0.00159 0.0 0.0864
ENSG00000236973 GAPDHP51 202063 eQTL 0.0195 -0.122 0.0522 0.0017 0.0 0.0864

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 31263 1.47e-05 2.3e-05 2.97e-06 1.2e-05 2.75e-06 6.82e-06 2.38e-05 3.39e-06 1.72e-05 8.35e-06 2.28e-05 7.87e-06 3.24e-05 8.31e-06 5.19e-06 1.11e-05 8.79e-06 1.43e-05 4.16e-06 4.08e-06 7.79e-06 1.87e-05 1.74e-05 4.74e-06 3e-05 5.29e-06 8e-06 7.68e-06 1.81e-05 1.54e-05 1.18e-05 1.19e-06 1.32e-06 4.1e-06 7.79e-06 3.8e-06 1.76e-06 2.13e-06 3.15e-06 2.07e-06 9.4e-07 3.15e-05 2.52e-06 2.52e-07 1.07e-06 2.56e-06 2.42e-06 8.11e-07 7.39e-07
ENSG00000116157 GPX7 -692171 2.64e-07 1.19e-07 5.64e-08 1.82e-07 8.83e-08 9.65e-08 1.41e-07 5.49e-08 1.41e-07 4.4e-08 1.6e-07 7.75e-08 1.3e-07 6.38e-08 5.84e-08 7.26e-08 4.48e-08 1.14e-07 5.82e-08 4.2e-08 1.05e-07 1.26e-07 1.32e-07 4.53e-08 1.33e-07 1.19e-07 1.11e-07 9.36e-08 1.03e-07 1.1e-07 9.58e-08 3.98e-08 2.91e-08 8.21e-08 8.98e-08 4.02e-08 4.84e-08 9.22e-08 7.52e-08 3e-08 4.51e-08 1.35e-07 4.89e-08 7.23e-09 7.26e-08 1.83e-08 1.19e-07 4.04e-09 4.79e-08
ENSG00000117859 OSBPL9 333021 9.83e-07 8.81e-07 3.49e-07 4.06e-07 1.12e-07 3.36e-07 5.76e-07 1.03e-07 5.49e-07 2.72e-07 6.28e-07 4.21e-07 9.1e-07 2.06e-07 3.08e-07 3.68e-07 4.29e-07 4.39e-07 4e-07 1.76e-07 2.5e-07 5.5e-07 4.06e-07 1.21e-07 1.22e-06 2.4e-07 4.34e-07 3.95e-07 5.03e-07 4.9e-07 3.56e-07 4.03e-08 5.42e-08 1.23e-07 3.44e-07 7.86e-08 8.28e-08 1.18e-07 6.72e-08 3.12e-08 4.78e-08 9.58e-07 6.53e-08 1.14e-07 9.95e-08 4.33e-08 1.83e-07 1.17e-08 5.65e-08
ENSG00000154222 CC2D1B -455993 3.27e-07 2.56e-07 1.14e-07 2.53e-07 1.07e-07 1.19e-07 2.16e-07 5.85e-08 1.85e-07 1.03e-07 1.63e-07 1.31e-07 2.38e-07 8.54e-08 6.6e-08 1.01e-07 4.63e-08 2.04e-07 1.13e-07 5.61e-08 1.33e-07 1.9e-07 1.81e-07 2.68e-08 2.48e-07 1.31e-07 1.29e-07 1.46e-07 1.34e-07 1.05e-07 1.22e-07 4.43e-08 3.21e-08 9.3e-08 6.25e-08 2.74e-08 4.54e-08 5.8e-08 6.21e-08 5.35e-08 5.87e-08 2.41e-07 2.89e-08 1.26e-08 2.64e-08 8.24e-09 9.38e-08 2.05e-09 4.69e-08
ENSG00000198841 KTI12 -123616 4.54e-06 7.87e-06 6.39e-07 3.47e-06 1.64e-06 1.7e-06 5.25e-06 1.04e-06 4.9e-06 2.44e-06 5.69e-06 3.34e-06 7.72e-06 2.39e-06 1.1e-06 4.5e-06 1.88e-06 3.99e-06 1.44e-06 9.85e-07 2.9e-06 5.38e-06 4.43e-06 1.57e-06 9e-06 1.87e-06 2.34e-06 1.78e-06 4.49e-06 4.12e-06 2.79e-06 4.2e-07 7.95e-07 1.96e-06 2e-06 9.58e-07 9.6e-07 3.74e-07 9.68e-07 4.88e-07 1.52e-07 8.07e-06 6.47e-07 1.59e-07 3.51e-07 1.32e-06 1.13e-06 2.4e-07 3.35e-07
ENSG00000232027 AL671986.1 537930 2.8e-07 1.51e-07 7.92e-08 2.09e-07 9.87e-08 8.45e-08 1.61e-07 5.37e-08 1.45e-07 5.67e-08 1.54e-07 9.19e-08 1.53e-07 7.95e-08 5.98e-08 7.74e-08 4.01e-08 1.4e-07 7.29e-08 4.89e-08 1.25e-07 1.26e-07 1.58e-07 3.49e-08 1.65e-07 1.21e-07 1.18e-07 1.06e-07 1.22e-07 1.07e-07 1.06e-07 3.03e-08 3.61e-08 8.34e-08 3.52e-08 3.65e-08 5.3e-08 8.51e-08 6.71e-08 3.92e-08 5.03e-08 1.52e-07 4.17e-08 1.52e-08 4.7e-08 1.55e-08 8.98e-08 1.88e-09 5.04e-08