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Genes within 1Mb (chr1:51909752:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 30815 sc-eQTL 4.01e-01 0.204 0.242 0.944 B_Activated L2
ENSG00000085832 EPS15 390486 sc-eQTL 1.40e-01 -0.339 0.228 0.944 B_Activated L2
ENSG00000116157 GPX7 -692619 sc-eQTL 7.68e-01 0.0656 0.222 0.944 B_Activated L2
ENSG00000117859 OSBPL9 332573 sc-eQTL 5.66e-01 -0.137 0.239 0.944 B_Activated L2
ENSG00000117862 TXNDC12 -146419 sc-eQTL 7.84e-01 0.0625 0.228 0.944 B_Activated L2
ENSG00000123080 CDKN2C 949007 sc-eQTL 2.40e-01 0.205 0.174 0.944 B_Activated L2
ENSG00000123091 RNF11 673479 sc-eQTL 2.81e-01 -0.232 0.215 0.944 B_Activated L2
ENSG00000134717 BTF3L4 -146447 sc-eQTL 5.89e-01 0.13 0.24 0.944 B_Activated L2
ENSG00000134744 TUT4 -643735 sc-eQTL 5.62e-01 -0.129 0.223 0.944 B_Activated L2
ENSG00000134748 PRPF38A -494850 sc-eQTL 2.97e-01 -0.236 0.225 0.944 B_Activated L2
ENSG00000154222 CC2D1B -456441 sc-eQTL 2.82e-01 0.237 0.22 0.944 B_Activated L2
ENSG00000162377 COA7 -788595 sc-eQTL 4.83e-02 -0.369 0.186 0.944 B_Activated L2
ENSG00000162378 ZYG11B -816701 sc-eQTL 9.17e-01 0.0241 0.23 0.944 B_Activated L2
ENSG00000182183 SHISAL2A -723416 sc-eQTL 2.70e-02 -0.445 0.199 0.944 B_Activated L2
ENSG00000185104 FAF1 949485 sc-eQTL 2.43e-01 -0.253 0.216 0.944 B_Activated L2
ENSG00000198841 KTI12 -124058 sc-eQTL 6.29e-01 0.0935 0.193 0.944 B_Activated L2
ENSG00000078618 NRDC 30815 sc-eQTL 2.15e-01 0.259 0.208 0.95 CD8_TEM L2
ENSG00000085832 EPS15 390486 sc-eQTL 2.63e-01 0.213 0.19 0.95 CD8_TEM L2
ENSG00000116157 GPX7 -692619 sc-eQTL 1.31e-01 -0.315 0.208 0.95 CD8_TEM L2
ENSG00000117859 OSBPL9 332573 sc-eQTL 9.87e-01 0.00353 0.224 0.95 CD8_TEM L2
ENSG00000117862 TXNDC12 -146419 sc-eQTL 9.92e-01 -0.00191 0.202 0.95 CD8_TEM L2
ENSG00000123080 CDKN2C 949007 sc-eQTL 6.38e-01 0.0995 0.211 0.95 CD8_TEM L2
ENSG00000123091 RNF11 673479 sc-eQTL 8.40e-01 0.0435 0.215 0.95 CD8_TEM L2
ENSG00000134717 BTF3L4 -146447 sc-eQTL 4.12e-01 -0.179 0.218 0.95 CD8_TEM L2
ENSG00000134744 TUT4 -643735 sc-eQTL 7.08e-02 -0.361 0.199 0.95 CD8_TEM L2
ENSG00000134748 PRPF38A -494850 sc-eQTL 9.52e-02 -0.348 0.207 0.95 CD8_TEM L2
ENSG00000154222 CC2D1B -456441 sc-eQTL 4.71e-01 -0.15 0.207 0.95 CD8_TEM L2
ENSG00000157077 ZFYVE9 -232342 sc-eQTL 2.59e-01 -0.213 0.188 0.95 CD8_TEM L2
ENSG00000162378 ZYG11B -816701 sc-eQTL 8.04e-01 -0.0527 0.212 0.95 CD8_TEM L2
ENSG00000182183 SHISAL2A -723416 sc-eQTL 6.69e-01 0.0859 0.201 0.95 CD8_TEM L2
ENSG00000185104 FAF1 949485 sc-eQTL 5.16e-01 0.137 0.211 0.95 CD8_TEM L2
ENSG00000198841 KTI12 -124058 sc-eQTL 9.40e-01 -0.0157 0.209 0.95 CD8_TEM L2
ENSG00000078618 NRDC 30815 sc-eQTL 9.40e-01 0.0143 0.189 0.941 PB L2
ENSG00000085832 EPS15 390486 sc-eQTL 4.40e-01 0.209 0.269 0.941 PB L2
ENSG00000116157 GPX7 -692619 sc-eQTL 7.77e-02 -0.368 0.207 0.941 PB L2
ENSG00000117859 OSBPL9 332573 sc-eQTL 8.95e-02 -0.38 0.222 0.941 PB L2
ENSG00000117862 TXNDC12 -146419 sc-eQTL 8.18e-01 -0.0384 0.167 0.941 PB L2
ENSG00000123080 CDKN2C 949007 sc-eQTL 1.28e-01 -0.291 0.19 0.941 PB L2
ENSG00000123091 RNF11 673479 sc-eQTL 2.73e-01 -0.289 0.262 0.941 PB L2
ENSG00000134717 BTF3L4 -146447 sc-eQTL 1.74e-01 0.365 0.267 0.941 PB L2
ENSG00000134744 TUT4 -643735 sc-eQTL 3.07e-01 -0.253 0.246 0.941 PB L2
ENSG00000134748 PRPF38A -494850 sc-eQTL 9.47e-01 -0.0157 0.233 0.941 PB L2
ENSG00000154222 CC2D1B -456441 sc-eQTL 4.32e-02 -0.515 0.252 0.941 PB L2
ENSG00000162377 COA7 -788595 sc-eQTL 4.03e-01 0.2 0.239 0.941 PB L2
ENSG00000162378 ZYG11B -816701 sc-eQTL 2.63e-01 0.293 0.26 0.941 PB L2
ENSG00000182183 SHISAL2A -723416 sc-eQTL 7.69e-01 -0.0641 0.217 0.941 PB L2
ENSG00000185104 FAF1 949485 sc-eQTL 1.27e-01 0.39 0.254 0.941 PB L2
ENSG00000198841 KTI12 -124058 sc-eQTL 6.14e-02 -0.458 0.242 0.941 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 30815 eQTL 1.68e-09 0.0807 0.0133 0.0 0.00238 0.0864
ENSG00000116157 GPX7 -692619 eQTL 3.16e-19 -0.38 0.0415 0.0 0.0 0.0864
ENSG00000117859 OSBPL9 332573 eQTL 1.39e-15 -0.186 0.0228 0.0 0.0 0.0864
ENSG00000117862 TXNDC12 -146419 eQTL 0.00281 0.0579 0.0193 0.0 0.0 0.0864
ENSG00000123091 RNF11 673479 eQTL 0.051 -0.0441 0.0225 0.0011 0.0 0.0864
ENSG00000134744 TUT4 -643735 eQTL 1.38e-03 -0.0727 0.0227 0.00449 0.00408 0.0864
ENSG00000154222 CC2D1B -456441 eQTL 6.7e-26 -0.311 0.0287 0.0 0.0 0.0864
ENSG00000198841 KTI12 -124064 eQTL 1.3e-05 0.127 0.0289 0.0 0.0 0.0864
ENSG00000232027 AL671986.1 537482 eQTL 0.0523 0.119 0.0614 0.00151 0.0 0.0864
ENSG00000236973 GAPDHP51 201615 eQTL 0.019 -0.122 0.0518 0.00172 0.0 0.0864

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 30815 1.5e-05 2.26e-05 2.95e-06 1.22e-05 2.47e-06 8.35e-06 2.38e-05 3.02e-06 1.81e-05 8.5e-06 2.31e-05 8.6e-06 3.55e-05 8.5e-06 5.14e-06 9.37e-06 9.64e-06 1.37e-05 4.64e-06 4.12e-06 7.66e-06 1.63e-05 1.72e-05 4.71e-06 2.84e-05 5.17e-06 7.99e-06 7.23e-06 1.83e-05 1.6e-05 1.24e-05 1.03e-06 1.46e-06 4.07e-06 7.8e-06 3.73e-06 1.79e-06 2.41e-06 3.34e-06 2.17e-06 1.01e-06 2.21e-05 2.47e-06 2.5e-07 8.66e-07 2.47e-06 2.32e-06 8.47e-07 6.37e-07
ENSG00000116157 GPX7 -692619 3.07e-07 1.59e-07 6.45e-08 2.57e-07 1.02e-07 1.19e-07 2.4e-07 5.68e-08 1.54e-07 9.35e-08 1.66e-07 1.2e-07 2.55e-07 8.15e-08 6.12e-08 7.97e-08 6.17e-08 1.91e-07 7.16e-08 8e-08 1.24e-07 1.65e-07 1.68e-07 3.68e-08 2.28e-07 1.31e-07 1.22e-07 1.26e-07 1.37e-07 1.17e-07 1.22e-07 6.7e-08 4.98e-08 9.98e-08 1.22e-07 3.57e-08 7.86e-08 5.8e-08 4.99e-08 8.3e-08 4.78e-08 1.59e-07 5.27e-08 1.88e-08 3.55e-08 1.01e-08 8.98e-08 2.71e-09 4.83e-08
ENSG00000117859 OSBPL9 332573 1.27e-06 9.53e-07 3.18e-07 1.23e-06 2.53e-07 5.99e-07 1.52e-06 3.46e-07 1.27e-06 4.11e-07 1.48e-06 5.97e-07 2.16e-06 2.88e-07 5.23e-07 6e-07 8.94e-07 5.88e-07 5.83e-07 6.46e-07 4.44e-07 1.24e-06 9.21e-07 6.2e-07 2.11e-06 3.66e-07 7.6e-07 7.59e-07 1.25e-06 1.24e-06 6.52e-07 2.62e-07 2.56e-07 7.11e-07 5.69e-07 4.23e-07 6.81e-07 2.34e-07 4.73e-07 3.08e-07 2.71e-07 1.51e-06 6.94e-08 1.32e-07 1.81e-07 1.2e-07 1.7e-07 5.95e-08 8.21e-08
ENSG00000154222 CC2D1B -456441 8.48e-07 6.56e-07 1.55e-07 3.77e-07 1.05e-07 3.18e-07 6.18e-07 1.45e-07 4.43e-07 2.62e-07 8.15e-07 3.68e-07 1.02e-06 1.54e-07 3.15e-07 2e-07 5.92e-07 4.11e-07 2.42e-07 2.68e-07 2.52e-07 4.38e-07 4e-07 2.17e-07 1.02e-06 2.55e-07 3.26e-07 2.98e-07 4.63e-07 6.73e-07 3.68e-07 2.06e-07 9.46e-08 2.04e-07 3.27e-07 1.8e-07 3.14e-07 1.24e-07 1.6e-07 1.82e-08 1.12e-07 5.52e-07 2.8e-08 3.38e-08 1.15e-07 3.54e-08 1.03e-07 8.34e-08 5.86e-08
ENSG00000198841 KTI12 -124064 5.17e-06 7.21e-06 6.64e-07 4.01e-06 1.53e-06 2.21e-06 8.08e-06 1.14e-06 4.67e-06 2.82e-06 7.6e-06 2.9e-06 1.03e-05 2.24e-06 9e-07 3.83e-06 2.92e-06 3.89e-06 1.44e-06 1.5e-06 3.11e-06 5.39e-06 4.78e-06 1.49e-06 9.13e-06 1.96e-06 2.23e-06 1.55e-06 5.81e-06 6.39e-06 2.74e-06 4.15e-07 6.5e-07 1.84e-06 2.35e-06 1.18e-06 1.03e-06 4.21e-07 1.12e-06 5.49e-07 4.51e-07 7.2e-06 3.83e-07 1.51e-07 3.64e-07 1.21e-06 1.01e-06 7.06e-07 3.53e-07
ENSG00000232027 AL671986.1 537482 5.74e-07 3.55e-07 9.71e-08 4.36e-07 1.05e-07 2.16e-07 4.53e-07 8.17e-08 2.56e-07 1.7e-07 3.92e-07 2.09e-07 6.27e-07 1.07e-07 1.51e-07 1.14e-07 2.77e-07 3.12e-07 1.27e-07 1.53e-07 1.76e-07 2.7e-07 2.67e-07 1.13e-07 5.53e-07 2.07e-07 1.87e-07 1.97e-07 2.57e-07 3.3e-07 2.19e-07 4.97e-08 4.55e-08 1.36e-07 3.52e-07 7.86e-08 1.4e-07 1.11e-07 6.74e-08 2.77e-08 7.16e-08 2.8e-07 3.37e-08 1.22e-08 7.93e-08 1.25e-08 9.84e-08 2.35e-08 5.52e-08