Genes within 1Mb (chr1:51909280:A:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 30343 sc-eQTL 4.01e-01 0.204 0.242 0.944 B_Activated L2
ENSG00000085832 EPS15 390014 sc-eQTL 1.40e-01 -0.339 0.228 0.944 B_Activated L2
ENSG00000116157 GPX7 -693091 sc-eQTL 7.68e-01 0.0656 0.222 0.944 B_Activated L2
ENSG00000117859 OSBPL9 332101 sc-eQTL 5.66e-01 -0.137 0.239 0.944 B_Activated L2
ENSG00000117862 TXNDC12 -146891 sc-eQTL 7.84e-01 0.0625 0.228 0.944 B_Activated L2
ENSG00000123080 CDKN2C 948535 sc-eQTL 2.40e-01 0.205 0.174 0.944 B_Activated L2
ENSG00000123091 RNF11 673007 sc-eQTL 2.81e-01 -0.232 0.215 0.944 B_Activated L2
ENSG00000134717 BTF3L4 -146919 sc-eQTL 5.89e-01 0.13 0.24 0.944 B_Activated L2
ENSG00000134744 TUT4 -644207 sc-eQTL 5.62e-01 -0.129 0.223 0.944 B_Activated L2
ENSG00000134748 PRPF38A -495322 sc-eQTL 2.97e-01 -0.236 0.225 0.944 B_Activated L2
ENSG00000154222 CC2D1B -456913 sc-eQTL 2.82e-01 0.237 0.22 0.944 B_Activated L2
ENSG00000162377 COA7 -789067 sc-eQTL 4.83e-02 -0.369 0.186 0.944 B_Activated L2
ENSG00000162378 ZYG11B -817173 sc-eQTL 9.17e-01 0.0241 0.23 0.944 B_Activated L2
ENSG00000182183 SHISAL2A -723888 sc-eQTL 2.70e-02 -0.445 0.199 0.944 B_Activated L2
ENSG00000185104 FAF1 949013 sc-eQTL 2.43e-01 -0.253 0.216 0.944 B_Activated L2
ENSG00000198841 KTI12 -124530 sc-eQTL 6.29e-01 0.0935 0.193 0.944 B_Activated L2
ENSG00000078618 NRDC 30343 sc-eQTL 2.15e-01 0.259 0.208 0.95 CD8_TEM L2
ENSG00000085832 EPS15 390014 sc-eQTL 2.63e-01 0.213 0.19 0.95 CD8_TEM L2
ENSG00000116157 GPX7 -693091 sc-eQTL 1.31e-01 -0.315 0.208 0.95 CD8_TEM L2
ENSG00000117859 OSBPL9 332101 sc-eQTL 9.87e-01 0.00353 0.224 0.95 CD8_TEM L2
ENSG00000117862 TXNDC12 -146891 sc-eQTL 9.92e-01 -0.00191 0.202 0.95 CD8_TEM L2
ENSG00000123080 CDKN2C 948535 sc-eQTL 6.38e-01 0.0995 0.211 0.95 CD8_TEM L2
ENSG00000123091 RNF11 673007 sc-eQTL 8.40e-01 0.0435 0.215 0.95 CD8_TEM L2
ENSG00000134717 BTF3L4 -146919 sc-eQTL 4.12e-01 -0.179 0.218 0.95 CD8_TEM L2
ENSG00000134744 TUT4 -644207 sc-eQTL 7.08e-02 -0.361 0.199 0.95 CD8_TEM L2
ENSG00000134748 PRPF38A -495322 sc-eQTL 9.52e-02 -0.348 0.207 0.95 CD8_TEM L2
ENSG00000154222 CC2D1B -456913 sc-eQTL 4.71e-01 -0.15 0.207 0.95 CD8_TEM L2
ENSG00000157077 ZFYVE9 -232814 sc-eQTL 2.59e-01 -0.213 0.188 0.95 CD8_TEM L2
ENSG00000162378 ZYG11B -817173 sc-eQTL 8.04e-01 -0.0527 0.212 0.95 CD8_TEM L2
ENSG00000182183 SHISAL2A -723888 sc-eQTL 6.69e-01 0.0859 0.201 0.95 CD8_TEM L2
ENSG00000185104 FAF1 949013 sc-eQTL 5.16e-01 0.137 0.211 0.95 CD8_TEM L2
ENSG00000198841 KTI12 -124530 sc-eQTL 9.40e-01 -0.0157 0.209 0.95 CD8_TEM L2
ENSG00000078618 NRDC 30343 sc-eQTL 9.40e-01 0.0143 0.189 0.941 PB L2
ENSG00000085832 EPS15 390014 sc-eQTL 4.40e-01 0.209 0.269 0.941 PB L2
ENSG00000116157 GPX7 -693091 sc-eQTL 7.77e-02 -0.368 0.207 0.941 PB L2
ENSG00000117859 OSBPL9 332101 sc-eQTL 8.95e-02 -0.38 0.222 0.941 PB L2
ENSG00000117862 TXNDC12 -146891 sc-eQTL 8.18e-01 -0.0384 0.167 0.941 PB L2
ENSG00000123080 CDKN2C 948535 sc-eQTL 1.28e-01 -0.291 0.19 0.941 PB L2
ENSG00000123091 RNF11 673007 sc-eQTL 2.73e-01 -0.289 0.262 0.941 PB L2
ENSG00000134717 BTF3L4 -146919 sc-eQTL 1.74e-01 0.365 0.267 0.941 PB L2
ENSG00000134744 TUT4 -644207 sc-eQTL 3.07e-01 -0.253 0.246 0.941 PB L2
ENSG00000134748 PRPF38A -495322 sc-eQTL 9.47e-01 -0.0157 0.233 0.941 PB L2
ENSG00000154222 CC2D1B -456913 sc-eQTL 4.32e-02 -0.515 0.252 0.941 PB L2
ENSG00000162377 COA7 -789067 sc-eQTL 4.03e-01 0.2 0.239 0.941 PB L2
ENSG00000162378 ZYG11B -817173 sc-eQTL 2.63e-01 0.293 0.26 0.941 PB L2
ENSG00000182183 SHISAL2A -723888 sc-eQTL 7.69e-01 -0.0641 0.217 0.941 PB L2
ENSG00000185104 FAF1 949013 sc-eQTL 1.27e-01 0.39 0.254 0.941 PB L2
ENSG00000198841 KTI12 -124530 sc-eQTL 6.14e-02 -0.458 0.242 0.941 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 30343 eQTL 2.46e-09 0.0804 0.0133 0.0 0.00198 0.0864
ENSG00000116157 GPX7 -693091 eQTL 4.52e-19 -0.38 0.0417 0.0 0.0 0.0864
ENSG00000117859 OSBPL9 332101 eQTL 2.3e-15 -0.185 0.023 0.0 0.0 0.0864
ENSG00000117862 TXNDC12 -146891 eQTL 0.00214 0.0598 0.0194 0.0 0.0 0.0864
ENSG00000123091 RNF11 673007 eQTL 0.0547 -0.0436 0.0227 0.00105 0.0 0.0864
ENSG00000134744 TUT4 -644207 eQTL 1.79e-03 -0.0714 0.0228 0.00393 0.00327 0.0864
ENSG00000154222 CC2D1B -456913 eQTL 6.630000000000001e-26 -0.313 0.0288 0.0 0.0 0.0864
ENSG00000198841 KTI12 -124536 eQTL 1.18e-05 0.128 0.0291 0.0 0.0 0.0864
ENSG00000232027 AL671986.1 537010 eQTL 0.0452 0.124 0.0618 0.00159 0.0 0.0864
ENSG00000236973 GAPDHP51 201143 eQTL 0.0195 -0.122 0.0522 0.0017 0.0 0.0864


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 30343 1.59e-05 1.71e-05 3.05e-06 9.91e-06 3.06e-06 8.35e-06 2.27e-05 3.02e-06 1.67e-05 8.72e-06 2.1e-05 8.05e-06 2.99e-05 7.21e-06 5.19e-06 1.01e-05 8.8e-06 1.46e-05 5.04e-06 4.19e-06 8.43e-06 1.68e-05 1.71e-05 5.14e-06 2.73e-05 5.31e-06 7.99e-06 7.73e-06 1.9e-05 1.63e-05 1.16e-05 1.27e-06 1.71e-06 4.87e-06 6.9e-06 3.76e-06 1.97e-06 2.72e-06 3.24e-06 2.18e-06 1.52e-06 2.05e-05 2.52e-06 2.62e-07 1.87e-06 2.63e-06 2.95e-06 1.3e-06 1.01e-06
ENSG00000116157 GPX7 -693091 3.02e-07 1.53e-07 6.28e-08 2.09e-07 1.02e-07 8.63e-08 1.99e-07 5.62e-08 1.54e-07 9.35e-08 1.63e-07 1.23e-07 2.05e-07 8e-08 5.69e-08 7.98e-08 4.35e-08 1.72e-07 7.16e-08 5.48e-08 1.18e-07 1.47e-07 1.58e-07 3.49e-08 1.98e-07 1.31e-07 1.19e-07 1.12e-07 1.31e-07 1.05e-07 1.09e-07 5.01e-08 3.65e-08 9.76e-08 3.71e-08 2.85e-08 4.06e-08 7.63e-08 6.62e-08 5.13e-08 5.87e-08 1.59e-07 3.99e-08 1.09e-08 3.36e-08 6.68e-09 7.83e-08 2.23e-09 4.67e-08
ENSG00000117859 OSBPL9 332101 1.22e-06 9.03e-07 2.81e-07 3.6e-07 2.19e-07 4.39e-07 9.74e-07 2.84e-07 1.09e-06 3.85e-07 1.26e-06 5.6e-07 1.46e-06 2.54e-07 4.12e-07 5.69e-07 7.73e-07 5.67e-07 4.65e-07 4.65e-07 3.6e-07 9.46e-07 6.93e-07 4.79e-07 1.71e-06 2.94e-07 6.38e-07 5.61e-07 8.81e-07 9.93e-07 4.9e-07 1.18e-07 1.95e-07 3.49e-07 3.67e-07 3.38e-07 3.77e-07 1.4e-07 1.5e-07 3.03e-08 2.44e-07 1.22e-06 7.66e-08 1.93e-08 1.62e-07 9.77e-08 2.01e-07 7.81e-08 9.32e-08
ENSG00000154222 CC2D1B -456913 7.74e-07 4.93e-07 1.04e-07 3.48e-07 9.29e-08 2.09e-07 5.13e-07 1.03e-07 3.66e-07 2.28e-07 5.29e-07 3.61e-07 6.47e-07 1.17e-07 2.15e-07 2e-07 2.98e-07 3.67e-07 1.97e-07 1.39e-07 1.97e-07 3.49e-07 3.08e-07 1.29e-07 6.39e-07 2.42e-07 2.57e-07 2.65e-07 3.27e-07 4.61e-07 2.54e-07 6.92e-08 4.49e-08 1.23e-07 3e-07 7.86e-08 1.18e-07 9.46e-08 5.67e-08 5.25e-08 8.29e-08 4.35e-07 2.47e-08 1.88e-08 1.23e-07 1.37e-08 9.95e-08 2.31e-08 6.03e-08
ENSG00000198841 KTI12 -124536 4.59e-06 5e-06 8.13e-07 2.65e-06 1.51e-06 1.63e-06 4.27e-06 9.97e-07 4.93e-06 2.41e-06 5.26e-06 3.54e-06 7.07e-06 2.4e-06 1.49e-06 3.36e-06 1.82e-06 3.36e-06 1.43e-06 1.04e-06 2.96e-06 4.72e-06 3.82e-06 1.4e-06 5.85e-06 1.76e-06 2.57e-06 1.89e-06 4.47e-06 4.13e-06 2.75e-06 5.58e-07 5.47e-07 1.6e-06 2.19e-06 9.6e-07 9.63e-07 4.24e-07 9.45e-07 3.57e-07 5.18e-07 5.64e-06 3.64e-07 1.83e-07 4.86e-07 8.46e-07 9.76e-07 5.21e-07 3.73e-07
ENSG00000232027 AL671986.1 537010 4.68e-07 2.56e-07 8.55e-08 2.48e-07 1.05e-07 1.44e-07 3.44e-07 7.46e-08 2.35e-07 1.5e-07 2.84e-07 2.11e-07 4.05e-07 9.15e-08 1.12e-07 1.17e-07 1.01e-07 2.83e-07 9.97e-08 7.54e-08 1.59e-07 2.3e-07 2.26e-07 5.6e-08 3.55e-07 1.94e-07 1.72e-07 1.67e-07 1.87e-07 2.19e-07 1.76e-07 8.32e-08 5.64e-08 1.01e-07 1.29e-07 5.05e-08 6.87e-08 6.56e-08 5.25e-08 8.16e-08 3.31e-08 2.65e-07 2.89e-08 1.58e-08 7.89e-08 1.35e-08 1.05e-07 3.2e-09 5.52e-08