Genes within 1Mb (chr1:51901689:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC 22752 sc-eQTL 4.01e-01 0.204 0.242 0.944 B_Activated L2
ENSG00000085832 EPS15 382423 sc-eQTL 1.40e-01 -0.339 0.228 0.944 B_Activated L2
ENSG00000116157 GPX7 -700682 sc-eQTL 7.68e-01 0.0656 0.222 0.944 B_Activated L2
ENSG00000117859 OSBPL9 324510 sc-eQTL 5.66e-01 -0.137 0.239 0.944 B_Activated L2
ENSG00000117862 TXNDC12 -154482 sc-eQTL 7.84e-01 0.0625 0.228 0.944 B_Activated L2
ENSG00000123080 CDKN2C 940944 sc-eQTL 2.40e-01 0.205 0.174 0.944 B_Activated L2
ENSG00000123091 RNF11 665416 sc-eQTL 2.81e-01 -0.232 0.215 0.944 B_Activated L2
ENSG00000134717 BTF3L4 -154510 sc-eQTL 5.89e-01 0.13 0.24 0.944 B_Activated L2
ENSG00000134744 TUT4 -651798 sc-eQTL 5.62e-01 -0.129 0.223 0.944 B_Activated L2
ENSG00000134748 PRPF38A -502913 sc-eQTL 2.97e-01 -0.236 0.225 0.944 B_Activated L2
ENSG00000154222 CC2D1B -464504 sc-eQTL 2.82e-01 0.237 0.22 0.944 B_Activated L2
ENSG00000162377 COA7 -796658 sc-eQTL 4.83e-02 -0.369 0.186 0.944 B_Activated L2
ENSG00000162378 ZYG11B -824764 sc-eQTL 9.17e-01 0.0241 0.23 0.944 B_Activated L2
ENSG00000182183 SHISAL2A -731479 sc-eQTL 2.70e-02 -0.445 0.199 0.944 B_Activated L2
ENSG00000185104 FAF1 941422 sc-eQTL 2.43e-01 -0.253 0.216 0.944 B_Activated L2
ENSG00000198841 KTI12 -132121 sc-eQTL 6.29e-01 0.0935 0.193 0.944 B_Activated L2
ENSG00000078618 NRDC 22752 sc-eQTL 2.15e-01 0.259 0.208 0.95 CD8_TEM L2
ENSG00000085832 EPS15 382423 sc-eQTL 2.63e-01 0.213 0.19 0.95 CD8_TEM L2
ENSG00000116157 GPX7 -700682 sc-eQTL 1.31e-01 -0.315 0.208 0.95 CD8_TEM L2
ENSG00000117859 OSBPL9 324510 sc-eQTL 9.87e-01 0.00353 0.224 0.95 CD8_TEM L2
ENSG00000117862 TXNDC12 -154482 sc-eQTL 9.92e-01 -0.00191 0.202 0.95 CD8_TEM L2
ENSG00000123080 CDKN2C 940944 sc-eQTL 6.38e-01 0.0995 0.211 0.95 CD8_TEM L2
ENSG00000123091 RNF11 665416 sc-eQTL 8.40e-01 0.0435 0.215 0.95 CD8_TEM L2
ENSG00000134717 BTF3L4 -154510 sc-eQTL 4.12e-01 -0.179 0.218 0.95 CD8_TEM L2
ENSG00000134744 TUT4 -651798 sc-eQTL 7.08e-02 -0.361 0.199 0.95 CD8_TEM L2
ENSG00000134748 PRPF38A -502913 sc-eQTL 9.52e-02 -0.348 0.207 0.95 CD8_TEM L2
ENSG00000154222 CC2D1B -464504 sc-eQTL 4.71e-01 -0.15 0.207 0.95 CD8_TEM L2
ENSG00000157077 ZFYVE9 -240405 sc-eQTL 2.59e-01 -0.213 0.188 0.95 CD8_TEM L2
ENSG00000162378 ZYG11B -824764 sc-eQTL 8.04e-01 -0.0527 0.212 0.95 CD8_TEM L2
ENSG00000182183 SHISAL2A -731479 sc-eQTL 6.69e-01 0.0859 0.201 0.95 CD8_TEM L2
ENSG00000185104 FAF1 941422 sc-eQTL 5.16e-01 0.137 0.211 0.95 CD8_TEM L2
ENSG00000198841 KTI12 -132121 sc-eQTL 9.40e-01 -0.0157 0.209 0.95 CD8_TEM L2
ENSG00000078618 NRDC 22752 sc-eQTL 9.40e-01 0.0143 0.189 0.941 PB L2
ENSG00000085832 EPS15 382423 sc-eQTL 4.40e-01 0.209 0.269 0.941 PB L2
ENSG00000116157 GPX7 -700682 sc-eQTL 7.77e-02 -0.368 0.207 0.941 PB L2
ENSG00000117859 OSBPL9 324510 sc-eQTL 8.95e-02 -0.38 0.222 0.941 PB L2
ENSG00000117862 TXNDC12 -154482 sc-eQTL 8.18e-01 -0.0384 0.167 0.941 PB L2
ENSG00000123080 CDKN2C 940944 sc-eQTL 1.28e-01 -0.291 0.19 0.941 PB L2
ENSG00000123091 RNF11 665416 sc-eQTL 2.73e-01 -0.289 0.262 0.941 PB L2
ENSG00000134717 BTF3L4 -154510 sc-eQTL 1.74e-01 0.365 0.267 0.941 PB L2
ENSG00000134744 TUT4 -651798 sc-eQTL 3.07e-01 -0.253 0.246 0.941 PB L2
ENSG00000134748 PRPF38A -502913 sc-eQTL 9.47e-01 -0.0157 0.233 0.941 PB L2
ENSG00000154222 CC2D1B -464504 sc-eQTL 4.32e-02 -0.515 0.252 0.941 PB L2
ENSG00000162377 COA7 -796658 sc-eQTL 4.03e-01 0.2 0.239 0.941 PB L2
ENSG00000162378 ZYG11B -824764 sc-eQTL 2.63e-01 0.293 0.26 0.941 PB L2
ENSG00000182183 SHISAL2A -731479 sc-eQTL 7.69e-01 -0.0641 0.217 0.941 PB L2
ENSG00000185104 FAF1 941422 sc-eQTL 1.27e-01 0.39 0.254 0.941 PB L2
ENSG00000198841 KTI12 -132121 sc-eQTL 6.14e-02 -0.458 0.242 0.941 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC 22752 eQTL 1.81e-09 0.0829 0.0136 0.0 0.0132 0.0834
ENSG00000116157 GPX7 -700682 eQTL 3.46e-18 -0.38 0.0428 0.0 0.0 0.0834
ENSG00000117859 OSBPL9 324510 eQTL 1.47e-15 -0.191 0.0235 0.0 0.0 0.0834
ENSG00000117862 TXNDC12 -154482 eQTL 0.00212 0.0613 0.0199 0.0 0.0 0.0834
ENSG00000123091 RNF11 665416 eQTL 0.0466 -0.0463 0.0232 0.00124 0.0 0.0834
ENSG00000134744 TUT4 -651798 eQTL 7.43e-03 -0.0627 0.0234 0.00198 0.00101 0.0834
ENSG00000154222 CC2D1B -464504 eQTL 4.18e-24 -0.309 0.0296 0.0 0.0 0.0834
ENSG00000198841 KTI12 -132127 eQTL 1.55e-05 0.129 0.0297 0.0 0.0 0.0834
ENSG00000232027 AL671986.1 529419 eQTL 0.0436 0.128 0.0632 0.00162 0.0 0.0834
ENSG00000236973 GAPDHP51 193552 eQTL 0.0319 -0.115 0.0534 0.00139 0.0 0.0834


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000078618 NRDC 22752 1.55e-05 1.84e-05 3.26e-06 1.04e-05 3.23e-06 8.2e-06 2.34e-05 3.17e-06 1.76e-05 9.14e-06 2.42e-05 9.08e-06 3.24e-05 7.67e-06 5.09e-06 1.05e-05 9.64e-06 1.6e-05 5.45e-06 4.41e-06 9.08e-06 1.79e-05 1.82e-05 6.21e-06 3.02e-05 5.41e-06 8.01e-06 7.8e-06 1.8e-05 1.91e-05 1.27e-05 1.58e-06 1.91e-06 5.43e-06 7.59e-06 4.5e-06 2.4e-06 2.79e-06 3.48e-06 2.54e-06 1.77e-06 2.52e-05 2.52e-06 4.02e-07 1.95e-06 2.75e-06 3.11e-06 1.34e-06 1.03e-06
ENSG00000116157 GPX7 -700682 3.71e-07 1.78e-07 5.64e-08 2.41e-07 1.02e-07 9.31e-08 2.4e-07 5.82e-08 1.85e-07 9.35e-08 2.18e-07 1.37e-07 3.04e-07 8.55e-08 5.97e-08 9.6e-08 4.35e-08 1.8e-07 7.12e-08 5.07e-08 1.18e-07 1.65e-07 1.68e-07 3.4e-08 2.99e-07 1.31e-07 1.22e-07 1.42e-07 1.32e-07 1.17e-07 1.35e-07 3.84e-08 3.68e-08 9.5e-08 6.98e-08 2.68e-08 3.7e-08 9.03e-08 6.67e-08 5.13e-08 5.65e-08 2.15e-07 5.22e-08 2.06e-08 3.4e-08 1.19e-08 9.96e-08 2.1e-09 4.82e-08
ENSG00000117859 OSBPL9 324510 1.29e-06 1.09e-06 3.03e-07 1.18e-06 3.17e-07 5.99e-07 1.58e-06 3.68e-07 1.49e-06 4.65e-07 2.03e-06 7.43e-07 2.55e-06 2.95e-07 5.31e-07 9.42e-07 8.42e-07 6.85e-07 6.91e-07 6.97e-07 6.61e-07 1.63e-06 8.35e-07 5.86e-07 2.41e-06 4.36e-07 9.41e-07 7.99e-07 1.35e-06 1.32e-06 7.69e-07 1.82e-07 2.34e-07 6.76e-07 5.39e-07 4.44e-07 5.04e-07 1.58e-07 2.9e-07 2.44e-07 2.73e-07 1.7e-06 5.77e-08 1.33e-07 1.69e-07 1.27e-07 2.21e-07 5.45e-08 9.59e-08
ENSG00000154222 CC2D1B -464504 1.24e-06 7.56e-07 9.71e-08 4.25e-07 1.1e-07 3.39e-07 6.18e-07 1.54e-07 6.18e-07 2.82e-07 1.1e-06 4.55e-07 1.16e-06 1.84e-07 2.86e-07 2.99e-07 3.93e-07 4.16e-07 2.12e-07 1.39e-07 2.35e-07 4.38e-07 4e-07 1.58e-07 1.49e-06 2.6e-07 3.48e-07 3.24e-07 4.33e-07 6.42e-07 3.95e-07 6.49e-08 5.51e-08 1.67e-07 3.32e-07 1.36e-07 1.01e-07 8.33e-08 4.44e-08 2.62e-08 8.81e-08 9.14e-07 2.88e-08 1.95e-08 1.49e-07 1.35e-08 1.1e-07 2.38e-08 5.19e-08
ENSG00000198841 KTI12 -132127 5.2e-06 5.27e-06 8.35e-07 3.21e-06 1.62e-06 1.55e-06 5.71e-06 9.99e-07 5.06e-06 2.95e-06 7.19e-06 3.3e-06 9.33e-06 1.79e-06 1.33e-06 3.84e-06 1.84e-06 3.99e-06 1.55e-06 1e-06 2.75e-06 4.73e-06 4.42e-06 1.48e-06 9e-06 1.85e-06 2.34e-06 1.64e-06 4.42e-06 4.8e-06 2.57e-06 4.2e-07 5.51e-07 1.62e-06 2.01e-06 1.13e-06 1.06e-06 4.24e-07 9.42e-07 4.57e-07 7.54e-07 7.76e-06 4.2e-07 1.54e-07 5.95e-07 8.63e-07 1.05e-06 5.83e-07 3.89e-07
ENSG00000232027 AL671986.1 529419 8.35e-07 5.33e-07 7.92e-08 3.81e-07 1.07e-07 2.08e-07 5.01e-07 9.78e-08 3.66e-07 2.01e-07 7.15e-07 3.3e-07 8.16e-07 1.34e-07 1.51e-07 2e-07 1.73e-07 3.56e-07 1.13e-07 7.29e-08 1.8e-07 2.99e-07 3.02e-07 9.01e-08 9.15e-07 2.29e-07 2.22e-07 2.57e-07 2.76e-07 3.71e-07 2.93e-07 8.25e-08 5.07e-08 1.37e-07 3.4e-07 6.52e-08 9.9e-08 5.53e-08 4.72e-08 7.39e-08 4.27e-08 5.87e-07 2.89e-08 5.83e-09 9.95e-08 1.35e-08 9.84e-08 3.35e-09 5.16e-08