Genes within 1Mb (chr1:51768066:C:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000078618 NRDC -110871 sc-eQTL 7.68e-01 -0.0541 0.183 0.052 PB L2
ENSG00000085832 EPS15 248800 sc-eQTL 3.37e-01 -0.251 0.261 0.052 PB L2
ENSG00000116157 GPX7 -834305 sc-eQTL 2.97e-01 0.212 0.202 0.052 PB L2
ENSG00000117859 OSBPL9 190887 sc-eQTL 5.36e-01 0.135 0.218 0.052 PB L2
ENSG00000117862 TXNDC12 -288105 sc-eQTL 4.72e-01 -0.116 0.161 0.052 PB L2
ENSG00000123080 CDKN2C 807321 sc-eQTL 1.36e-01 0.277 0.185 0.052 PB L2
ENSG00000123091 RNF11 531793 sc-eQTL 2.63e-01 0.286 0.254 0.052 PB L2
ENSG00000134717 BTF3L4 -288133 sc-eQTL 3.41e-01 -0.249 0.26 0.052 PB L2
ENSG00000134744 TUT4 -785421 sc-eQTL 1.50e-01 0.345 0.238 0.052 PB L2
ENSG00000134748 PRPF38A -636536 sc-eQTL 9.90e-01 -0.0029 0.226 0.052 PB L2
ENSG00000154222 CC2D1B -598127 sc-eQTL 1.36e-01 0.37 0.246 0.052 PB L2
ENSG00000162377 COA7 -930281 sc-eQTL 7.94e-01 -0.0607 0.232 0.052 PB L2
ENSG00000162378 ZYG11B -958387 sc-eQTL 1.25e-01 -0.388 0.251 0.052 PB L2
ENSG00000182183 SHISAL2A -865102 sc-eQTL 6.22e-01 0.104 0.211 0.052 PB L2
ENSG00000185104 FAF1 807799 sc-eQTL 3.28e-01 -0.243 0.248 0.052 PB L2
ENSG00000198841 KTI12 -265744 sc-eQTL 2.03e-01 0.303 0.237 0.052 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000078618 NRDC -110871 eQTL 0.000396 -0.0558 0.0157 0.0 0.0 0.0628
ENSG00000116157 GPX7 -834305 eQTL 2e-08 0.281 0.0497 0.0 0.0 0.0628
ENSG00000117859 OSBPL9 190887 eQTL 7.749999999999999e-30 0.303 0.0258 0.0 0.0 0.0628
ENSG00000117862 TXNDC12 -288105 eQTL 0.037 -0.0472 0.0226 0.0 0.0 0.0628
ENSG00000123080 CDKN2C 807321 eQTL 0.0466 -0.106 0.0533 0.0 0.0 0.0628
ENSG00000123091 RNF11 531793 eQTL 0.0149 0.0641 0.0263 0.00162 0.0 0.0628
ENSG00000154222 CC2D1B -598127 eQTL 5.41e-06 0.161 0.0351 0.0 0.0 0.0628
ENSG00000157077 ZFYVE9 -374028 eQTL 0.0572 0.0917 0.0482 0.00129 0.0 0.0628
ENSG00000162378 ZYG11B -958387 eQTL 0.048 0.0785 0.0397 0.0 0.0 0.0628
ENSG00000198841 KTI12 -265750 eQTL 0.000693 -0.115 0.0339 0.0 0.0 0.0628
ENSG00000232846 SLC25A6P3 59004 eQTL 0.0182 0.138 0.0585 0.0 0.0 0.0628
ENSG00000266993 AL050343.1 -25868 eQTL 0.0644 0.0813 0.0439 0.00101 0.0 0.0628


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116157 GPX7 -834305 5.74e-07 9.47e-07 6.26e-08 3.57e-07 1.07e-07 1.26e-07 5.82e-07 5.53e-08 1.03e-06 1.46e-07 1.26e-06 5.53e-07 8.6e-07 2.7e-07 1.45e-07 1.76e-07 9.3e-08 2.75e-07 8e-08 4.3e-08 1.33e-07 3.15e-07 3.7e-07 3.03e-08 1.54e-06 1.51e-07 1.23e-07 1.36e-07 3e-07 2.89e-07 4.48e-07 3.88e-08 2.91e-08 1.39e-07 1.95e-07 3.53e-08 5.08e-08 9.22e-08 6.58e-08 3.86e-08 3.82e-08 1.53e-06 5.24e-08 7.39e-09 8.03e-08 1.19e-08 1.22e-07 4.33e-09 4.77e-08
ENSG00000117859 OSBPL9 190887 8.12e-06 1.26e-05 2.41e-06 5.52e-06 2.22e-06 3e-06 9.6e-06 1.26e-06 1.03e-05 5.14e-06 1.19e-05 6.86e-06 1.25e-05 3.99e-06 3.14e-06 5.24e-06 3.58e-06 4.4e-06 2.53e-06 1.77e-06 4.48e-06 8.98e-06 7.76e-06 1.7e-06 1.37e-05 2.84e-06 4.22e-06 2.27e-06 7.98e-06 7.09e-06 5.06e-06 6.26e-07 7.92e-07 2.43e-06 3.16e-06 1.07e-06 1.27e-06 6.96e-07 9.38e-07 6.1e-07 1.52e-07 1.31e-05 1.27e-06 1.82e-07 5.94e-07 1.32e-06 9.78e-07 6.84e-07 5.05e-07
ENSG00000123080 CDKN2C 807321 6.33e-07 9.79e-07 6.55e-08 3.96e-07 1.02e-07 1.5e-07 6.08e-07 5.66e-08 1.12e-06 1.6e-07 1.35e-06 5.81e-07 9.57e-07 3e-07 1.57e-07 2e-07 1.18e-07 2.9e-07 9.19e-08 4.89e-08 1.39e-07 3.76e-07 3.84e-07 2.64e-08 1.69e-06 1.65e-07 1.25e-07 1.44e-07 3.56e-07 3.52e-07 4.9e-07 3.88e-08 2.92e-08 1.42e-07 2.61e-07 3.04e-08 4.99e-08 9.23e-08 6.42e-08 4.47e-08 4.36e-08 1.64e-06 5.21e-08 1.1e-08 7.91e-08 6.39e-09 1.24e-07 4.26e-09 4.91e-08
ENSG00000154222 CC2D1B -598127 1.22e-06 2.59e-06 1.45e-07 7.39e-07 9.23e-08 3.12e-07 1.49e-06 1.03e-07 1.7e-06 3.09e-07 2e-06 1.15e-06 2.01e-06 1.1e-06 4.38e-07 6.36e-07 7.79e-07 5.02e-07 3.06e-07 7.29e-08 2.38e-07 1.17e-06 9.29e-07 5.11e-08 2.44e-06 2.64e-07 3.68e-07 3.13e-07 1.02e-06 1.04e-06 8.46e-07 3.92e-08 3.13e-08 4.91e-07 3.67e-07 5.41e-08 5.71e-08 6.32e-08 5.28e-08 7.77e-08 5.34e-08 2.92e-06 1.96e-08 1.79e-08 3.4e-08 1.37e-08 8.98e-08 1.88e-09 4.99e-08