Genes within 1Mb (chr1:46450374:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 -166469 eQTL 3.63e-04 -0.129 0.036 0.0 0.0 0.0294
ENSG00000085998 POMGNT1 230069 eQTL 3.45e-02 0.0644 0.0304 0.0 0.0 0.0294
ENSG00000117472 TSPAN1 275301 pQTL 3.18e-02 -0.159 0.074 0.0 0.0 0.0303
ENSG00000117481 NSUN4 110197 eQTL 2.57e-12 0.488 0.0688 0.0 0.0 0.0294
ENSG00000142961 MOB3C -166517 eQTL 1.60e-02 -0.132 0.0545 0.0 0.0 0.0294
ENSG00000159588 CCDC17 826317 eQTL 3.69e-02 -0.0858 0.0411 0.0 0.0 0.0294
ENSG00000225447 RPS15AP10 804177 eQTL 2.46e-02 -0.218 0.0966 0.0 0.0 0.0294
ENSG00000226252 AL135960.1 -775423 eQTL 2.03e-02 -0.184 0.0791 0.0 0.0 0.0294
ENSG00000232022 FAAHP1 18245 eQTL 7.33e-03 -0.232 0.0864 0.00158 0.0 0.0294
ENSG00000237424 FOXD2-AS1 -984267 eQTL 8.26e-04 -0.238 0.0708 0.00826 0.00234 0.0294


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117480 \N 56057 2.55e-05 2.32e-05 4.28e-06 9.91e-06 2.91e-06 8.57e-06 2.91e-05 3.01e-06 1.92e-05 9.45e-06 2.08e-05 8.31e-06 3.42e-05 7.48e-06 5.37e-06 1.03e-05 1.38e-05 1.53e-05 5.8e-06 4.47e-06 8.78e-06 2e-05 2e-05 6.12e-06 2.94e-05 5.57e-06 7.96e-06 8.11e-06 1.9e-05 1.64e-05 1.19e-05 1.47e-06 1.68e-06 4.03e-06 6.46e-06 3.3e-06 1.84e-06 2.38e-06 3.44e-06 2.18e-06 1.01e-06 2.19e-05 2.67e-06 1.88e-07 1.95e-06 2.35e-06 2.46e-06 6.06e-07 4.56e-07
ENSG00000117481 NSUN4 110197 8.64e-06 9.55e-06 1.63e-06 3.85e-06 1.72e-06 4e-06 1.02e-05 1.15e-06 5.77e-06 4.38e-06 8.05e-06 3.25e-06 1.27e-05 3.81e-06 2.94e-06 5.24e-06 5.57e-06 3.8e-06 2.5e-06 2.15e-06 4.39e-06 7.64e-06 6.57e-06 3.36e-06 1.14e-05 2.35e-06 2.92e-06 3.39e-06 7.05e-06 7.83e-06 3.42e-06 9.99e-07 9.22e-07 2.89e-06 2.07e-06 1.33e-06 1e-06 5.57e-07 1.82e-06 9.75e-07 2.8e-07 8.32e-06 1.54e-06 1.68e-07 7.66e-07 1.32e-06 1e-06 4.27e-07 3.41e-07
ENSG00000159588 CCDC17 826317 2.67e-07 1.06e-07 3.39e-08 1.79e-07 9.91e-08 9.3e-08 1.38e-07 5.24e-08 1.37e-07 4.24e-08 1.63e-07 8.02e-08 1.26e-07 6.21e-08 5.4e-08 8.01e-08 4.94e-08 1.14e-07 5.19e-08 4.03e-08 1.05e-07 1.33e-07 1.3e-07 4.82e-08 1.31e-07 1.09e-07 1.13e-07 8.71e-08 9.88e-08 1.1e-07 9.75e-08 3.76e-08 2.91e-08 8.44e-08 8.99e-08 4.12e-08 4.51e-08 9.35e-08 7.63e-08 3.55e-08 3.34e-08 1.36e-07 4.14e-08 0.0 9.21e-08 1.69e-08 1.35e-07 4.7e-09 4.74e-08
ENSG00000159596 \N 762193 2.74e-07 1.01e-07 3.31e-08 1.82e-07 9.91e-08 9.71e-08 1.42e-07 5.24e-08 1.42e-07 4.38e-08 1.63e-07 8.02e-08 1.33e-07 6.21e-08 5.53e-08 8.01e-08 4.94e-08 1.18e-07 5.19e-08 4.03e-08 1.04e-07 1.33e-07 1.26e-07 4.67e-08 1.33e-07 1.13e-07 1.1e-07 9.32e-08 1.02e-07 1.1e-07 9.58e-08 4.1e-08 3.09e-08 8.23e-08 8.98e-08 4.07e-08 4.79e-08 9.13e-08 7.23e-08 3.87e-08 4.18e-08 1.36e-07 4.89e-08 4.72e-08 8.16e-08 1.67e-08 1.34e-07 4.6e-09 4.74e-08
ENSG00000225447 RPS15AP10 804177 2.69e-07 1.06e-07 3.35e-08 1.78e-07 9.91e-08 9.57e-08 1.38e-07 5.24e-08 1.37e-07 4.24e-08 1.63e-07 8.02e-08 1.3e-07 6.21e-08 5.55e-08 8.01e-08 4.94e-08 1.14e-07 5.19e-08 4.03e-08 1.05e-07 1.33e-07 1.3e-07 4.82e-08 1.31e-07 1.13e-07 1.1e-07 8.71e-08 1.02e-07 1.1e-07 9.58e-08 3.71e-08 2.92e-08 8.25e-08 8.93e-08 4.07e-08 4.67e-08 9.25e-08 7.58e-08 3.77e-08 4e-08 1.36e-07 4.33e-08 0.0 8.79e-08 1.68e-08 1.35e-07 4.7e-09 4.74e-08
ENSG00000232022 FAAHP1 18245 3.75e-05 3.34e-05 5.99e-06 1.55e-05 5.98e-06 1.42e-05 4.55e-05 4.49e-06 3.16e-05 1.52e-05 3.78e-05 1.74e-05 4.8e-05 1.4e-05 6.95e-06 1.84e-05 1.8e-05 2.52e-05 7.83e-06 6.6e-06 1.49e-05 3.34e-05 3.24e-05 8.82e-06 4.44e-05 7.99e-06 1.33e-05 1.28e-05 3.19e-05 2.53e-05 2e-05 1.63e-06 2.6e-06 6.84e-06 1.14e-05 5.61e-06 3.1e-06 3.19e-06 4.62e-06 3.24e-06 1.74e-06 3.81e-05 3.63e-06 3.55e-07 2.49e-06 3.67e-06 3.97e-06 1.53e-06 1.57e-06