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Genes within 1Mb (chr6:140132683:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 997603 sc-eQTL 4.95e-01 -0.0456 0.0667 0.474 B L1
ENSG00000164440 TXLNB 840685 sc-eQTL 9.09e-01 0.00977 0.0849 0.474 B L1
ENSG00000164442 CITED2 758035 sc-eQTL 7.97e-01 0.0138 0.0535 0.474 B L1
ENSG00000226571 AL592429.2 861321 sc-eQTL 8.89e-01 0.0083 0.0595 0.474 B L1
ENSG00000112406 HECA 997603 sc-eQTL 7.29e-01 -0.0218 0.0628 0.474 CD4T L1
ENSG00000164442 CITED2 758035 sc-eQTL 8.42e-01 -0.0123 0.0619 0.474 CD4T L1
ENSG00000231329 AL031772.1 893030 sc-eQTL 5.21e-01 0.0391 0.0609 0.474 CD4T L1
ENSG00000112406 HECA 997603 sc-eQTL 7.91e-01 0.0158 0.0596 0.474 CD8T L1
ENSG00000164442 CITED2 758035 sc-eQTL 7.19e-01 -0.0218 0.0606 0.474 CD8T L1
ENSG00000231329 AL031772.1 893030 sc-eQTL 9.89e-01 -0.00103 0.0737 0.474 CD8T L1
ENSG00000112406 HECA 997603 sc-eQTL 2.97e-01 0.0727 0.0695 0.477 DC L1
ENSG00000164442 CITED2 758035 sc-eQTL 3.87e-02 -0.164 0.0789 0.477 DC L1
ENSG00000112406 HECA 997603 sc-eQTL 7.20e-01 -0.0195 0.0544 0.474 Mono L1
ENSG00000164442 CITED2 758035 sc-eQTL 1.80e-01 -0.0841 0.0625 0.474 Mono L1
ENSG00000112406 HECA 997603 sc-eQTL 3.52e-01 -0.0595 0.0638 0.476 NK L1
ENSG00000164442 CITED2 758035 sc-eQTL 4.43e-01 0.0454 0.0591 0.476 NK L1
ENSG00000112406 HECA 997603 sc-eQTL 1.35e-01 0.0943 0.0628 0.474 Other_T L1
ENSG00000164442 CITED2 758035 sc-eQTL 2.01e-01 -0.0665 0.0518 0.474 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 997603 sc-eQTL 5.71e-01 -0.0533 0.094 0.487 B_Activated L2
ENSG00000164440 TXLNB 840685 sc-eQTL 1.11e-01 0.121 0.0757 0.487 B_Activated L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.97e-01 -0.124 0.0956 0.487 B_Activated L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 9.90e-02 -0.158 0.0952 0.487 B_Activated L2
ENSG00000112406 HECA 997603 sc-eQTL 8.06e-01 0.0179 0.0725 0.474 B_Intermediate L2
ENSG00000164440 TXLNB 840685 sc-eQTL 7.78e-01 -0.023 0.0815 0.474 B_Intermediate L2
ENSG00000164442 CITED2 758035 sc-eQTL 5.50e-01 -0.0449 0.0749 0.474 B_Intermediate L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 6.19e-01 0.0404 0.0812 0.474 B_Intermediate L2
ENSG00000112406 HECA 997603 sc-eQTL 9.43e-01 -0.00525 0.0738 0.474 B_Memory L2
ENSG00000164440 TXLNB 840685 sc-eQTL 2.34e-01 0.0961 0.0805 0.474 B_Memory L2
ENSG00000164442 CITED2 758035 sc-eQTL 2.28e-01 -0.0895 0.074 0.474 B_Memory L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 5.25e-01 0.058 0.091 0.474 B_Memory L2
ENSG00000112406 HECA 997603 sc-eQTL 1.31e-01 -0.108 0.0713 0.474 B_Naive1 L2
ENSG00000164440 TXLNB 840685 sc-eQTL 2.60e-01 -0.0979 0.0867 0.474 B_Naive1 L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.35e-01 0.0944 0.0629 0.474 B_Naive1 L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 8.70e-01 0.0136 0.083 0.474 B_Naive1 L2
ENSG00000112406 HECA 997603 sc-eQTL 3.81e-01 -0.0654 0.0745 0.474 B_Naive2 L2
ENSG00000164440 TXLNB 840685 sc-eQTL 8.58e-01 -0.0149 0.0831 0.474 B_Naive2 L2
ENSG00000164442 CITED2 758035 sc-eQTL 8.88e-01 0.012 0.0847 0.474 B_Naive2 L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 7.37e-01 -0.0261 0.0778 0.474 B_Naive2 L2
ENSG00000112406 HECA 997603 sc-eQTL 5.80e-01 0.0473 0.0852 0.473 CD4_CTL L2
ENSG00000164442 CITED2 758035 sc-eQTL 8.37e-01 -0.0156 0.0758 0.473 CD4_CTL L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 4.56e-01 0.0583 0.0781 0.473 CD4_CTL L2
ENSG00000112406 HECA 997603 sc-eQTL 9.07e-01 -0.00723 0.0617 0.474 CD4_Naive L2
ENSG00000164442 CITED2 758035 sc-eQTL 9.79e-01 -0.00167 0.0626 0.474 CD4_Naive L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 9.41e-01 -0.00471 0.0633 0.474 CD4_Naive L2
ENSG00000112406 HECA 997603 sc-eQTL 8.37e-01 -0.0127 0.0617 0.474 CD4_TCM L2
ENSG00000164442 CITED2 758035 sc-eQTL 5.03e-01 -0.0448 0.0668 0.474 CD4_TCM L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 4.21e-03 0.205 0.0709 0.474 CD4_TCM L2
ENSG00000112406 HECA 997603 sc-eQTL 8.66e-01 0.0115 0.068 0.474 CD4_TEM L2
ENSG00000164442 CITED2 758035 sc-eQTL 5.89e-01 -0.0375 0.0693 0.474 CD4_TEM L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 7.65e-01 -0.0217 0.0725 0.474 CD4_TEM L2
ENSG00000112406 HECA 997603 sc-eQTL 7.16e-01 0.024 0.0659 0.474 CD8_CTL L2
ENSG00000164442 CITED2 758035 sc-eQTL 2.51e-01 -0.0763 0.0663 0.474 CD8_CTL L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 8.13e-01 0.0189 0.0797 0.474 CD8_CTL L2
ENSG00000112406 HECA 997603 sc-eQTL 8.66e-01 0.0112 0.0663 0.474 CD8_Naive L2
ENSG00000164442 CITED2 758035 sc-eQTL 4.98e-01 -0.0479 0.0705 0.474 CD8_Naive L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 5.13e-01 0.0529 0.0807 0.474 CD8_Naive L2
ENSG00000112406 HECA 997603 sc-eQTL 2.23e-01 0.0853 0.0697 0.488 CD8_TCM L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.57e-01 -0.105 0.0741 0.488 CD8_TCM L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 6.88e-01 -0.0317 0.0786 0.488 CD8_TCM L2
ENSG00000112406 HECA 997603 sc-eQTL 8.95e-01 -0.011 0.0834 0.463 CD8_TEM L2
ENSG00000164442 CITED2 758035 sc-eQTL 6.80e-01 -0.03 0.0727 0.463 CD8_TEM L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 7.69e-02 -0.146 0.0821 0.463 CD8_TEM L2
ENSG00000112406 HECA 997603 sc-eQTL 1.01e-01 0.118 0.0714 0.472 MAIT L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.65e-01 -0.093 0.0667 0.472 MAIT L2
ENSG00000112406 HECA 997603 sc-eQTL 6.82e-01 -0.0323 0.0787 0.478 NK_CD56bright L2
ENSG00000164442 CITED2 758035 sc-eQTL 4.96e-01 0.0494 0.0725 0.478 NK_CD56bright L2
ENSG00000112406 HECA 997603 sc-eQTL 5.06e-01 -0.046 0.0692 0.478 NK_CD56dim L2
ENSG00000164442 CITED2 758035 sc-eQTL 2.39e-01 0.0697 0.0591 0.478 NK_CD56dim L2
ENSG00000112406 HECA 997603 sc-eQTL 3.84e-01 0.0737 0.0844 0.479 NK_HLA L2
ENSG00000164442 CITED2 758035 sc-eQTL 3.25e-01 0.0721 0.0731 0.479 NK_HLA L2
ENSG00000112406 HECA 997603 sc-eQTL 9.75e-01 -0.00219 0.0706 0.478 NK_cytokine L2
ENSG00000164442 CITED2 758035 sc-eQTL 9.29e-01 -0.00546 0.0613 0.478 NK_cytokine L2
ENSG00000112406 HECA 997603 sc-eQTL 5.24e-01 0.0727 0.114 0.481 PB L2
ENSG00000164440 TXLNB 840685 sc-eQTL 3.46e-01 -0.0975 0.103 0.481 PB L2
ENSG00000164442 CITED2 758035 sc-eQTL 7.53e-01 0.0245 0.0779 0.481 PB L2
ENSG00000226571 AL592429.2 861321 sc-eQTL 8.96e-01 -0.0137 0.105 0.481 PB L2
ENSG00000112406 HECA 997603 sc-eQTL 2.37e-01 0.0849 0.0716 0.472 Pro_T L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.59e-01 0.0914 0.0647 0.472 Pro_T L2
ENSG00000112406 HECA 997603 sc-eQTL 5.51e-01 0.0417 0.0698 0.474 Treg L2
ENSG00000164442 CITED2 758035 sc-eQTL 4.36e-01 -0.0536 0.0687 0.474 Treg L2
ENSG00000231329 AL031772.1 893030 sc-eQTL 2.60e-01 0.0886 0.0784 0.474 Treg L2
ENSG00000112406 HECA 997603 sc-eQTL 2.45e-01 0.0923 0.0792 0.476 cDC L2
ENSG00000164442 CITED2 758035 sc-eQTL 2.59e-02 -0.172 0.0767 0.476 cDC L2
ENSG00000112406 HECA 997603 sc-eQTL 7.72e-01 -0.0155 0.0536 0.474 cMono_IL1B L2
ENSG00000164442 CITED2 758035 sc-eQTL 1.84e-01 -0.0815 0.0611 0.474 cMono_IL1B L2
ENSG00000112406 HECA 997603 sc-eQTL 5.99e-01 -0.0333 0.0633 0.474 cMono_S100A L2
ENSG00000164442 CITED2 758035 sc-eQTL 3.13e-02 -0.14 0.0646 0.474 cMono_S100A L2
ENSG00000112406 HECA 997603 sc-eQTL 5.79e-01 0.0534 0.096 0.494 gdT L2
ENSG00000164442 CITED2 758035 sc-eQTL 3.90e-01 -0.0742 0.086 0.494 gdT L2
ENSG00000112406 HECA 997603 sc-eQTL 9.17e-01 -0.00764 0.0729 0.476 intMono L2
ENSG00000164442 CITED2 758035 sc-eQTL 7.47e-01 -0.0238 0.0736 0.476 intMono L2
ENSG00000112406 HECA 997603 sc-eQTL 5.27e-01 0.0479 0.0756 0.48 ncMono L2
ENSG00000164442 CITED2 758035 sc-eQTL 9.82e-02 -0.101 0.0609 0.48 ncMono L2
ENSG00000112406 HECA 997603 sc-eQTL 7.89e-01 0.0209 0.0782 0.48 pDC L2
ENSG00000164442 CITED2 758035 sc-eQTL 7.53e-01 -0.0293 0.093 0.48 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 997603 sc-eQTL 8.01e-01 0.0181 0.0715 0.474 B_Memory LOneK1K
ENSG00000164440 TXLNB 840685 sc-eQTL 2.09e-01 0.107 0.0848 0.474 B_Memory LOneK1K
ENSG00000164442 CITED2 758035 sc-eQTL 1.64e-01 -0.1 0.0719 0.474 B_Memory LOneK1K
ENSG00000226571 AL592429.2 861321 sc-eQTL 8.94e-01 -0.0112 0.084 0.474 B_Memory LOneK1K
ENSG00000112406 HECA 997603 sc-eQTL 2.03e-01 -0.0904 0.0707 0.474 B_Naive LOneK1K
ENSG00000164440 TXLNB 840685 sc-eQTL 5.88e-01 -0.0482 0.0888 0.474 B_Naive LOneK1K
ENSG00000164442 CITED2 758035 sc-eQTL 3.12e-01 0.0653 0.0644 0.474 B_Naive LOneK1K
ENSG00000226571 AL592429.2 861321 sc-eQTL 6.10e-01 0.0387 0.0758 0.474 B_Naive LOneK1K
ENSG00000112406 HECA 997603 sc-eQTL 4.63e-01 -0.0394 0.0536 0.474 CD14_Mono LOneK1K
ENSG00000164442 CITED2 758035 sc-eQTL 5.78e-02 -0.119 0.0624 0.474 CD14_Mono LOneK1K
ENSG00000112406 HECA 997603 sc-eQTL 8.99e-01 0.00882 0.0697 0.476 CD16_Mono LOneK1K
ENSG00000164442 CITED2 758035 sc-eQTL 2.61e-01 -0.0685 0.0607 0.476 CD16_Mono LOneK1K
ENSG00000112406 HECA 997603 sc-eQTL 5.62e-01 -0.038 0.0655 0.478 NK_CD56dim LOneK1K
ENSG00000164442 CITED2 758035 sc-eQTL 5.49e-01 0.0358 0.0597 0.478 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000112406 \N 997603 2.56e-07 1.11e-07 3.49e-08 1.66e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.59e-07 7.4e-08 1.2e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.5e-08 3.29e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.31e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08