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Genes within 1Mb (chr6:140069969:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 934889 sc-eQTL 2.37e-01 -0.0799 0.0673 0.476 B L1
ENSG00000164440 TXLNB 777971 sc-eQTL 7.04e-01 0.0327 0.0859 0.476 B L1
ENSG00000164442 CITED2 695321 sc-eQTL 9.95e-01 0.000362 0.0541 0.476 B L1
ENSG00000226571 AL592429.2 798607 sc-eQTL 9.78e-01 0.00167 0.0602 0.476 B L1
ENSG00000112406 HECA 934889 sc-eQTL 5.74e-01 -0.0358 0.0636 0.476 CD4T L1
ENSG00000164442 CITED2 695321 sc-eQTL 7.16e-01 -0.0228 0.0627 0.476 CD4T L1
ENSG00000231329 AL031772.1 830316 sc-eQTL 8.52e-01 0.0116 0.0618 0.476 CD4T L1
ENSG00000112406 HECA 934889 sc-eQTL 9.94e-01 -0.000476 0.0604 0.476 CD8T L1
ENSG00000164442 CITED2 695321 sc-eQTL 5.59e-01 -0.0359 0.0613 0.476 CD8T L1
ENSG00000231329 AL031772.1 830316 sc-eQTL 9.29e-01 -0.00666 0.0746 0.476 CD8T L1
ENSG00000112406 HECA 934889 sc-eQTL 4.01e-01 0.0597 0.0709 0.48 DC L1
ENSG00000164442 CITED2 695321 sc-eQTL 3.55e-02 -0.17 0.0804 0.48 DC L1
ENSG00000112406 HECA 934889 sc-eQTL 5.01e-01 -0.0372 0.0553 0.476 Mono L1
ENSG00000164442 CITED2 695321 sc-eQTL 1.16e-01 -0.1 0.0635 0.476 Mono L1
ENSG00000112406 HECA 934889 sc-eQTL 3.03e-01 -0.0665 0.0643 0.479 NK L1
ENSG00000164442 CITED2 695321 sc-eQTL 5.57e-01 0.0351 0.0595 0.479 NK L1
ENSG00000112406 HECA 934889 sc-eQTL 1.74e-01 0.0874 0.064 0.476 Other_T L1
ENSG00000164442 CITED2 695321 sc-eQTL 1.58e-01 -0.0748 0.0528 0.476 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 934889 sc-eQTL 4.16e-01 -0.0781 0.0959 0.49 B_Activated L2
ENSG00000164440 TXLNB 777971 sc-eQTL 1.54e-01 0.111 0.0775 0.49 B_Activated L2
ENSG00000164442 CITED2 695321 sc-eQTL 2.87e-01 -0.105 0.0978 0.49 B_Activated L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 2.02e-01 -0.125 0.0975 0.49 B_Activated L2
ENSG00000112406 HECA 934889 sc-eQTL 7.95e-01 -0.0192 0.0736 0.476 B_Intermediate L2
ENSG00000164440 TXLNB 777971 sc-eQTL 8.53e-01 -0.0154 0.0828 0.476 B_Intermediate L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.77e-01 -0.0542 0.0761 0.476 B_Intermediate L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 7.04e-01 0.0313 0.0825 0.476 B_Intermediate L2
ENSG00000112406 HECA 934889 sc-eQTL 8.24e-01 -0.0168 0.0752 0.476 B_Memory L2
ENSG00000164440 TXLNB 777971 sc-eQTL 1.92e-01 0.107 0.082 0.476 B_Memory L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.32e-01 -0.0594 0.0755 0.476 B_Memory L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 8.10e-01 0.0223 0.0928 0.476 B_Memory L2
ENSG00000112406 HECA 934889 sc-eQTL 6.23e-02 -0.135 0.0723 0.476 B_Naive1 L2
ENSG00000164440 TXLNB 777971 sc-eQTL 3.36e-01 -0.085 0.0881 0.476 B_Naive1 L2
ENSG00000164442 CITED2 695321 sc-eQTL 1.90e-01 0.0842 0.064 0.476 B_Naive1 L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 7.73e-01 0.0243 0.0843 0.476 B_Naive1 L2
ENSG00000112406 HECA 934889 sc-eQTL 3.03e-01 -0.0782 0.0757 0.476 B_Naive2 L2
ENSG00000164440 TXLNB 777971 sc-eQTL 8.20e-01 -0.0192 0.0844 0.476 B_Naive2 L2
ENSG00000164442 CITED2 695321 sc-eQTL 8.95e-01 -0.0114 0.0862 0.476 B_Naive2 L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 9.65e-01 0.00345 0.0791 0.476 B_Naive2 L2
ENSG00000112406 HECA 934889 sc-eQTL 6.52e-01 0.0389 0.086 0.475 CD4_CTL L2
ENSG00000164442 CITED2 695321 sc-eQTL 8.14e-01 -0.018 0.0765 0.475 CD4_CTL L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 6.07e-01 0.0406 0.0789 0.475 CD4_CTL L2
ENSG00000112406 HECA 934889 sc-eQTL 7.75e-01 -0.018 0.0628 0.476 CD4_Naive L2
ENSG00000164442 CITED2 695321 sc-eQTL 9.19e-01 -0.00648 0.0637 0.476 CD4_Naive L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 5.73e-01 -0.0363 0.0643 0.476 CD4_Naive L2
ENSG00000112406 HECA 934889 sc-eQTL 8.20e-01 -0.0142 0.0625 0.476 CD4_TCM L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.38e-01 -0.0526 0.0677 0.476 CD4_TCM L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 6.25e-03 0.199 0.072 0.476 CD4_TCM L2
ENSG00000112406 HECA 934889 sc-eQTL 9.74e-01 0.00225 0.069 0.476 CD4_TEM L2
ENSG00000164442 CITED2 695321 sc-eQTL 6.88e-01 -0.0283 0.0703 0.476 CD4_TEM L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 6.77e-01 -0.0307 0.0736 0.476 CD4_TEM L2
ENSG00000112406 HECA 934889 sc-eQTL 9.72e-01 0.00232 0.067 0.476 CD8_CTL L2
ENSG00000164442 CITED2 695321 sc-eQTL 2.40e-01 -0.0793 0.0673 0.476 CD8_CTL L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 8.23e-01 0.0181 0.081 0.476 CD8_CTL L2
ENSG00000112406 HECA 934889 sc-eQTL 9.49e-01 -0.00431 0.0673 0.476 CD8_Naive L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.42e-01 -0.055 0.0715 0.476 CD8_Naive L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 5.87e-01 0.0446 0.0819 0.476 CD8_Naive L2
ENSG00000112406 HECA 934889 sc-eQTL 2.51e-01 0.0814 0.0707 0.488 CD8_TCM L2
ENSG00000164442 CITED2 695321 sc-eQTL 1.46e-01 -0.11 0.0751 0.488 CD8_TCM L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 5.39e-01 -0.0491 0.0797 0.488 CD8_TCM L2
ENSG00000112406 HECA 934889 sc-eQTL 9.75e-01 -0.00264 0.0846 0.466 CD8_TEM L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.66e-01 -0.0538 0.0737 0.466 CD8_TEM L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 7.84e-02 -0.147 0.0833 0.466 CD8_TEM L2
ENSG00000112406 HECA 934889 sc-eQTL 9.84e-02 0.12 0.0726 0.474 MAIT L2
ENSG00000164442 CITED2 695321 sc-eQTL 2.39e-01 -0.0801 0.0679 0.474 MAIT L2
ENSG00000112406 HECA 934889 sc-eQTL 6.80e-01 -0.0329 0.0798 0.478 NK_CD56bright L2
ENSG00000164442 CITED2 695321 sc-eQTL 7.25e-01 0.0259 0.0736 0.478 NK_CD56bright L2
ENSG00000112406 HECA 934889 sc-eQTL 5.16e-01 -0.0455 0.0699 0.481 NK_CD56dim L2
ENSG00000164442 CITED2 695321 sc-eQTL 3.14e-01 0.0603 0.0597 0.481 NK_CD56dim L2
ENSG00000112406 HECA 934889 sc-eQTL 3.89e-01 0.0744 0.0861 0.482 NK_HLA L2
ENSG00000164442 CITED2 695321 sc-eQTL 3.27e-01 0.0733 0.0746 0.482 NK_HLA L2
ENSG00000112406 HECA 934889 sc-eQTL 7.98e-01 -0.0183 0.0715 0.481 NK_cytokine L2
ENSG00000164442 CITED2 695321 sc-eQTL 9.07e-01 -0.00728 0.0621 0.481 NK_cytokine L2
ENSG00000112406 HECA 934889 sc-eQTL 6.93e-01 0.0456 0.115 0.485 PB L2
ENSG00000164440 TXLNB 777971 sc-eQTL 5.42e-01 -0.064 0.105 0.485 PB L2
ENSG00000164442 CITED2 695321 sc-eQTL 9.64e-01 0.00355 0.079 0.485 PB L2
ENSG00000226571 AL592429.2 798607 sc-eQTL 9.34e-01 -0.00885 0.106 0.485 PB L2
ENSG00000112406 HECA 934889 sc-eQTL 5.44e-01 0.0442 0.0727 0.472 Pro_T L2
ENSG00000164442 CITED2 695321 sc-eQTL 2.87e-01 0.0701 0.0657 0.472 Pro_T L2
ENSG00000112406 HECA 934889 sc-eQTL 9.41e-01 0.00529 0.0709 0.476 Treg L2
ENSG00000164442 CITED2 695321 sc-eQTL 3.59e-01 -0.064 0.0697 0.476 Treg L2
ENSG00000231329 AL031772.1 830316 sc-eQTL 4.77e-01 0.0569 0.0797 0.476 Treg L2
ENSG00000112406 HECA 934889 sc-eQTL 2.98e-01 0.0845 0.081 0.478 cDC L2
ENSG00000164442 CITED2 695321 sc-eQTL 2.94e-02 -0.172 0.0784 0.478 cDC L2
ENSG00000112406 HECA 934889 sc-eQTL 5.93e-01 -0.0291 0.0544 0.476 cMono_IL1B L2
ENSG00000164442 CITED2 695321 sc-eQTL 1.27e-01 -0.0949 0.062 0.476 cMono_IL1B L2
ENSG00000112406 HECA 934889 sc-eQTL 4.36e-01 -0.0502 0.0642 0.476 cMono_S100A L2
ENSG00000164442 CITED2 695321 sc-eQTL 9.06e-03 -0.172 0.0653 0.476 cMono_S100A L2
ENSG00000112406 HECA 934889 sc-eQTL 6.36e-01 0.0461 0.0972 0.494 gdT L2
ENSG00000164442 CITED2 695321 sc-eQTL 1.43e-01 -0.128 0.0866 0.494 gdT L2
ENSG00000112406 HECA 934889 sc-eQTL 8.78e-01 -0.0114 0.0743 0.478 intMono L2
ENSG00000164442 CITED2 695321 sc-eQTL 4.98e-01 -0.0508 0.0749 0.478 intMono L2
ENSG00000112406 HECA 934889 sc-eQTL 9.37e-01 0.00612 0.0773 0.482 ncMono L2
ENSG00000164442 CITED2 695321 sc-eQTL 7.24e-02 -0.112 0.0621 0.482 ncMono L2
ENSG00000112406 HECA 934889 sc-eQTL 7.89e-01 0.0215 0.0799 0.483 pDC L2
ENSG00000164442 CITED2 695321 sc-eQTL 7.47e-01 -0.0307 0.0951 0.483 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000112406 HECA 934889 sc-eQTL 8.32e-01 -0.0154 0.0727 0.476 B_Memory LOneK1K
ENSG00000164440 TXLNB 777971 sc-eQTL 1.85e-01 0.115 0.0862 0.476 B_Memory LOneK1K
ENSG00000164442 CITED2 695321 sc-eQTL 2.25e-01 -0.089 0.0732 0.476 B_Memory LOneK1K
ENSG00000226571 AL592429.2 798607 sc-eQTL 7.69e-01 -0.0251 0.0853 0.476 B_Memory LOneK1K
ENSG00000112406 HECA 934889 sc-eQTL 1.10e-01 -0.115 0.0716 0.476 B_Naive LOneK1K
ENSG00000164440 TXLNB 777971 sc-eQTL 6.48e-01 -0.0412 0.0902 0.476 B_Naive LOneK1K
ENSG00000164442 CITED2 695321 sc-eQTL 4.24e-01 0.0525 0.0654 0.476 B_Naive LOneK1K
ENSG00000226571 AL592429.2 798607 sc-eQTL 4.95e-01 0.0526 0.0769 0.476 B_Naive LOneK1K
ENSG00000112406 HECA 934889 sc-eQTL 3.34e-01 -0.0527 0.0544 0.476 CD14_Mono LOneK1K
ENSG00000164442 CITED2 695321 sc-eQTL 2.89e-02 -0.139 0.0632 0.476 CD14_Mono LOneK1K
ENSG00000112406 HECA 934889 sc-eQTL 7.18e-01 -0.0258 0.0711 0.478 CD16_Mono LOneK1K
ENSG00000164442 CITED2 695321 sc-eQTL 1.73e-01 -0.0847 0.0618 0.478 CD16_Mono LOneK1K
ENSG00000112406 HECA 934889 sc-eQTL 5.23e-01 -0.0424 0.0662 0.481 NK_CD56dim LOneK1K
ENSG00000164442 CITED2 695321 sc-eQTL 6.36e-01 0.0286 0.0603 0.481 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000164442 CITED2 695321 eQTL 0.036 -0.0473 0.0225 0.00117 0.0 0.49

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000112406 \N 934889 2.74e-07 1.25e-07 4.48e-08 1.84e-07 9.16e-08 9.8e-08 1.53e-07 5.4e-08 1.45e-07 4.94e-08 1.57e-07 8.55e-08 1.45e-07 6.76e-08 6.02e-08 7.53e-08 3.87e-08 1.27e-07 5.82e-08 4e-08 1.13e-07 1.28e-07 1.39e-07 3.23e-08 1.46e-07 1.14e-07 1.07e-07 9.57e-08 1.09e-07 1.03e-07 9.7e-08 3.87e-08 3.56e-08 8.44e-08 8.21e-08 3.94e-08 5.01e-08 9.23e-08 6.55e-08 4.02e-08 3.82e-08 1.36e-07 5.27e-08 1.16e-08 5.15e-08 1.83e-08 1.22e-07 3.83e-09 4.9e-08