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Genes within 1Mb (chr6:139655334:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A 881825 sc-eQTL 8.17e-01 -0.0443 0.191 0.052 DC L1
ENSG00000112406 HECA 520254 sc-eQTL 9.40e-01 0.0119 0.157 0.052 DC L1
ENSG00000135540 NHSL1 962763 sc-eQTL 9.56e-01 0.00971 0.175 0.052 DC L1
ENSG00000135597 REPS1 667073 sc-eQTL 8.31e-01 -0.0331 0.155 0.052 DC L1
ENSG00000146386 ABRACL 626589 sc-eQTL 8.97e-01 0.0196 0.151 0.052 DC L1
ENSG00000164442 CITED2 280686 sc-eQTL 5.47e-01 -0.108 0.179 0.052 DC L1
ENSG00000225177 AL590617.2 962786 sc-eQTL 3.14e-01 -0.184 0.182 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A 881825 sc-eQTL 6.38e-01 -0.111 0.235 0.051 B_Activated L2
ENSG00000112406 HECA 520254 sc-eQTL 1.19e-01 0.349 0.223 0.051 B_Activated L2
ENSG00000135597 REPS1 667073 sc-eQTL 7.03e-01 -0.0896 0.235 0.051 B_Activated L2
ENSG00000146386 ABRACL 626589 sc-eQTL 4.21e-01 -0.171 0.212 0.051 B_Activated L2
ENSG00000164440 TXLNB 363336 sc-eQTL 7.89e-01 0.0487 0.182 0.051 B_Activated L2
ENSG00000164442 CITED2 280686 sc-eQTL 5.84e-01 0.125 0.229 0.051 B_Activated L2
ENSG00000226571 AL592429.2 383972 sc-eQTL 5.90e-01 -0.123 0.228 0.051 B_Activated L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 8.90e-01 0.0262 0.189 0.05 CD4_CTL L2
ENSG00000112406 HECA 520254 sc-eQTL 9.85e-01 -0.0036 0.19 0.05 CD4_CTL L2
ENSG00000135597 REPS1 667073 sc-eQTL 4.41e-01 0.143 0.185 0.05 CD4_CTL L2
ENSG00000146386 ABRACL 626589 sc-eQTL 6.14e-01 -0.085 0.168 0.05 CD4_CTL L2
ENSG00000164442 CITED2 280686 sc-eQTL 6.93e-01 0.0668 0.169 0.05 CD4_CTL L2
ENSG00000231329 AL031772.1 415681 sc-eQTL 4.00e-01 0.147 0.174 0.05 CD4_CTL L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 4.58e-01 0.162 0.217 0.051 CD8_TCM L2
ENSG00000112406 HECA 520254 sc-eQTL 3.98e-01 -0.135 0.159 0.051 CD8_TCM L2
ENSG00000135597 REPS1 667073 sc-eQTL 8.59e-01 -0.0294 0.166 0.051 CD8_TCM L2
ENSG00000146386 ABRACL 626589 sc-eQTL 5.81e-01 0.0912 0.165 0.051 CD8_TCM L2
ENSG00000164442 CITED2 280686 sc-eQTL 8.83e-01 -0.025 0.169 0.051 CD8_TCM L2
ENSG00000231329 AL031772.1 415681 sc-eQTL 1.31e-01 0.27 0.178 0.051 CD8_TCM L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 9.34e-01 -0.0164 0.198 0.051 NK_CD56bright L2
ENSG00000112406 HECA 520254 sc-eQTL 7.74e-01 0.0516 0.18 0.051 NK_CD56bright L2
ENSG00000135597 REPS1 667073 sc-eQTL 1.46e-01 -0.243 0.167 0.051 NK_CD56bright L2
ENSG00000146386 ABRACL 626589 sc-eQTL 1.95e-01 -0.2 0.154 0.051 NK_CD56bright L2
ENSG00000164442 CITED2 280686 sc-eQTL 1.69e-01 -0.228 0.165 0.051 NK_CD56bright L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 1.43e-01 -0.307 0.209 0.053 NK_HLA L2
ENSG00000112406 HECA 520254 sc-eQTL 1.03e-01 0.319 0.195 0.053 NK_HLA L2
ENSG00000135597 REPS1 667073 sc-eQTL 9.08e-01 -0.0223 0.194 0.053 NK_HLA L2
ENSG00000146386 ABRACL 626589 sc-eQTL 9.81e-01 0.00373 0.159 0.053 NK_HLA L2
ENSG00000164442 CITED2 280686 sc-eQTL 4.11e-01 -0.14 0.17 0.053 NK_HLA L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 6.86e-01 -0.0861 0.213 0.05 Pro_T L2
ENSG00000112406 HECA 520254 sc-eQTL 4.50e-02 -0.335 0.166 0.05 Pro_T L2
ENSG00000135597 REPS1 667073 sc-eQTL 9.74e-01 0.00655 0.198 0.05 Pro_T L2
ENSG00000146386 ABRACL 626589 sc-eQTL 9.05e-02 -0.215 0.126 0.05 Pro_T L2
ENSG00000164442 CITED2 280686 sc-eQTL 7.09e-01 0.0566 0.152 0.05 Pro_T L2
ENSG00000024862 CCDC28A 881825 sc-eQTL 3.92e-01 -0.187 0.218 0.051 pDC L2
ENSG00000112406 HECA 520254 sc-eQTL 9.84e-01 0.0038 0.185 0.051 pDC L2
ENSG00000135540 NHSL1 962763 sc-eQTL 6.82e-01 0.0692 0.169 0.051 pDC L2
ENSG00000135597 REPS1 667073 sc-eQTL 7.42e-01 -0.0564 0.171 0.051 pDC L2
ENSG00000146386 ABRACL 626589 sc-eQTL 4.33e-01 0.147 0.186 0.051 pDC L2
ENSG00000164442 CITED2 280686 sc-eQTL 9.18e-01 -0.0225 0.22 0.051 pDC L2
ENSG00000225177 AL590617.2 962786 sc-eQTL 2.76e-01 -0.185 0.169 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000024862 CCDC28A 881825 pQTL 0.0135 -0.168 0.0679 0.0 0.0 0.0618

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina