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Genes within 1Mb (chr6:139078402:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000024862 CCDC28A 304893 sc-eQTL 8.88e-02 0.32 0.187 0.05 CD4_CTL L2
ENSG00000051620 HEBP2 674871 sc-eQTL 9.91e-01 0.00176 0.163 0.05 CD4_CTL L2
ENSG00000112378 PERP 970983 sc-eQTL 8.33e-01 -0.0419 0.198 0.05 CD4_CTL L2
ENSG00000112406 HECA -56678 sc-eQTL 7.97e-01 -0.049 0.19 0.05 CD4_CTL L2
ENSG00000135597 REPS1 90141 sc-eQTL 7.95e-01 -0.048 0.185 0.05 CD4_CTL L2
ENSG00000146386 ABRACL 49657 sc-eQTL 5.55e-01 -0.0994 0.168 0.05 CD4_CTL L2
ENSG00000164442 CITED2 -296246 sc-eQTL 1.10e-01 -0.27 0.168 0.05 CD4_CTL L2
ENSG00000231329 AL031772.1 -161251 sc-eQTL 8.22e-01 0.0392 0.174 0.05 CD4_CTL L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 2.46e-02 -0.535 0.236 0.051 CD8_TCM L2
ENSG00000051620 HEBP2 674871 sc-eQTL 7.78e-01 -0.0475 0.168 0.051 CD8_TCM L2
ENSG00000112378 PERP 970983 sc-eQTL 6.44e-01 -0.103 0.222 0.051 CD8_TCM L2
ENSG00000112406 HECA -56678 sc-eQTL 3.85e-01 0.152 0.175 0.051 CD8_TCM L2
ENSG00000135597 REPS1 90141 sc-eQTL 3.42e-01 -0.173 0.182 0.051 CD8_TCM L2
ENSG00000146386 ABRACL 49657 sc-eQTL 5.33e-01 0.113 0.181 0.051 CD8_TCM L2
ENSG00000164442 CITED2 -296246 sc-eQTL 9.58e-01 0.00972 0.186 0.051 CD8_TCM L2
ENSG00000231329 AL031772.1 -161251 sc-eQTL 7.74e-01 0.0566 0.197 0.051 CD8_TCM L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 2.78e-01 -0.224 0.206 0.053 CD8_TEM L2
ENSG00000051620 HEBP2 674871 sc-eQTL 4.93e-01 -0.129 0.188 0.053 CD8_TEM L2
ENSG00000112378 PERP 970983 sc-eQTL 3.58e-01 0.197 0.214 0.053 CD8_TEM L2
ENSG00000112406 HECA -56678 sc-eQTL 5.92e-01 0.104 0.193 0.053 CD8_TEM L2
ENSG00000135597 REPS1 90141 sc-eQTL 4.28e-01 0.16 0.201 0.053 CD8_TEM L2
ENSG00000146386 ABRACL 49657 sc-eQTL 9.81e-01 0.00361 0.155 0.053 CD8_TEM L2
ENSG00000164442 CITED2 -296246 sc-eQTL 8.61e-01 0.0295 0.169 0.053 CD8_TEM L2
ENSG00000231329 AL031772.1 -161251 sc-eQTL 3.93e-01 -0.164 0.191 0.053 CD8_TEM L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 3.75e-01 0.175 0.197 0.051 NK_CD56bright L2
ENSG00000051620 HEBP2 674871 sc-eQTL 6.53e-01 -0.0757 0.168 0.051 NK_CD56bright L2
ENSG00000112378 PERP 970983 sc-eQTL 4.69e-01 -0.13 0.18 0.051 NK_CD56bright L2
ENSG00000112406 HECA -56678 sc-eQTL 4.49e-01 -0.136 0.179 0.051 NK_CD56bright L2
ENSG00000135597 REPS1 90141 sc-eQTL 1.80e-02 0.393 0.165 0.051 NK_CD56bright L2
ENSG00000146386 ABRACL 49657 sc-eQTL 4.66e-01 0.112 0.154 0.051 NK_CD56bright L2
ENSG00000164442 CITED2 -296246 sc-eQTL 7.35e-01 -0.0559 0.165 0.051 NK_CD56bright L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 6.64e-01 -0.089 0.205 0.053 NK_HLA L2
ENSG00000051620 HEBP2 674871 sc-eQTL 9.99e-01 0.000147 0.174 0.053 NK_HLA L2
ENSG00000112378 PERP 970983 sc-eQTL 5.24e-01 -0.0988 0.155 0.053 NK_HLA L2
ENSG00000112406 HECA -56678 sc-eQTL 7.58e-01 0.059 0.191 0.053 NK_HLA L2
ENSG00000135597 REPS1 90141 sc-eQTL 8.74e-02 0.322 0.188 0.053 NK_HLA L2
ENSG00000146386 ABRACL 49657 sc-eQTL 6.21e-01 -0.0769 0.155 0.053 NK_HLA L2
ENSG00000164442 CITED2 -296246 sc-eQTL 5.36e-01 0.103 0.166 0.053 NK_HLA L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 2.36e-01 -0.284 0.239 0.052 gdT L2
ENSG00000051620 HEBP2 674871 sc-eQTL 8.07e-01 0.0561 0.229 0.052 gdT L2
ENSG00000112378 PERP 970983 sc-eQTL 9.63e-01 0.00985 0.212 0.052 gdT L2
ENSG00000112406 HECA -56678 sc-eQTL 9.87e-01 0.00371 0.228 0.052 gdT L2
ENSG00000135597 REPS1 90141 sc-eQTL 5.12e-01 0.155 0.235 0.052 gdT L2
ENSG00000146386 ABRACL 49657 sc-eQTL 8.53e-01 -0.0329 0.177 0.052 gdT L2
ENSG00000164442 CITED2 -296246 sc-eQTL 5.89e-01 -0.11 0.204 0.052 gdT L2
ENSG00000024862 CCDC28A 304893 sc-eQTL 2.64e-01 0.222 0.198 0.051 intMono L2
ENSG00000051620 HEBP2 674871 sc-eQTL 1.36e-01 -0.199 0.133 0.051 intMono L2
ENSG00000112406 HECA -56678 sc-eQTL 6.68e-01 -0.0701 0.163 0.051 intMono L2
ENSG00000135540 NHSL1 385831 sc-eQTL 8.53e-01 -0.0333 0.18 0.051 intMono L2
ENSG00000135597 REPS1 90141 sc-eQTL 1.86e-01 -0.246 0.185 0.051 intMono L2
ENSG00000146386 ABRACL 49657 sc-eQTL 7.65e-01 0.0508 0.17 0.051 intMono L2
ENSG00000164442 CITED2 -296246 sc-eQTL 8.35e-01 0.0343 0.165 0.051 intMono L2
ENSG00000225177 AL590617.2 385854 sc-eQTL 8.15e-01 0.0472 0.202 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146386 ABRACL 49657 eQTL 0.00126 0.232 0.0717 0.0 0.0 0.0275

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina