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Genes within 1Mb (chr6:134866768:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 914598 sc-eQTL 9.43e-01 -0.0154 0.215 0.054 B_Activated L2
ENSG00000112339 HBS1L -236288 sc-eQTL 3.61e-01 -0.204 0.223 0.054 B_Activated L2
ENSG00000118515 SGK1 548656 sc-eQTL 2.10e-01 -0.235 0.187 0.054 B_Activated L2
ENSG00000135541 AHI1 -630997 sc-eQTL 2.83e-01 0.226 0.21 0.054 B_Activated L2
ENSG00000171408 PDE7B -984933 sc-eQTL 8.08e-01 -0.047 0.193 0.054 B_Activated L2
ENSG00000028839 TBPL1 914598 sc-eQTL 6.82e-01 0.0808 0.197 0.05 CD4_CTL L2
ENSG00000112339 HBS1L -236288 sc-eQTL 9.48e-01 -0.0133 0.202 0.05 CD4_CTL L2
ENSG00000118513 MYB -314540 sc-eQTL 7.05e-01 0.0518 0.136 0.05 CD4_CTL L2
ENSG00000118515 SGK1 548656 sc-eQTL 8.55e-02 0.271 0.157 0.05 CD4_CTL L2
ENSG00000135541 AHI1 -630997 sc-eQTL 7.01e-01 -0.0729 0.189 0.05 CD4_CTL L2
ENSG00000028839 TBPL1 914598 sc-eQTL 3.79e-01 0.188 0.213 0.051 CD8_TCM L2
ENSG00000112339 HBS1L -236288 sc-eQTL 8.06e-01 -0.045 0.183 0.051 CD8_TCM L2
ENSG00000118513 MYB -314540 sc-eQTL 9.01e-01 0.0215 0.172 0.051 CD8_TCM L2
ENSG00000118515 SGK1 548656 sc-eQTL 4.01e-02 0.324 0.157 0.051 CD8_TCM L2
ENSG00000135541 AHI1 -630997 sc-eQTL 9.30e-01 0.018 0.203 0.051 CD8_TCM L2
ENSG00000028839 TBPL1 914598 sc-eQTL 6.38e-01 0.107 0.227 0.05 NK_HLA L2
ENSG00000112339 HBS1L -236288 sc-eQTL 8.97e-01 0.0272 0.209 0.05 NK_HLA L2
ENSG00000118515 SGK1 548656 sc-eQTL 2.31e-01 -0.231 0.192 0.05 NK_HLA L2
ENSG00000135541 AHI1 -630997 sc-eQTL 3.25e-01 0.216 0.219 0.05 NK_HLA L2
ENSG00000028839 TBPL1 914598 sc-eQTL 8.79e-01 -0.0404 0.265 0.052 PB L2
ENSG00000112339 HBS1L -236288 sc-eQTL 3.00e-02 -0.452 0.206 0.052 PB L2
ENSG00000118515 SGK1 548656 sc-eQTL 2.45e-02 0.472 0.207 0.052 PB L2
ENSG00000135541 AHI1 -630997 sc-eQTL 1.09e-01 -0.45 0.279 0.052 PB L2
ENSG00000171408 PDE7B -984933 sc-eQTL 4.10e-01 -0.157 0.189 0.052 PB L2
ENSG00000028839 TBPL1 914598 sc-eQTL 6.29e-01 -0.105 0.218 0.051 cDC L2
ENSG00000112339 HBS1L -236288 sc-eQTL 6.60e-01 -0.0953 0.216 0.051 cDC L2
ENSG00000118513 MYB -314540 sc-eQTL 1.45e-01 -0.227 0.155 0.051 cDC L2
ENSG00000118515 SGK1 548656 sc-eQTL 6.09e-01 0.0827 0.162 0.051 cDC L2
ENSG00000135541 AHI1 -630997 sc-eQTL 5.05e-01 -0.126 0.188 0.051 cDC L2
ENSG00000171408 PDE7B -984933 sc-eQTL 3.52e-01 -0.171 0.184 0.051 cDC L2
ENSG00000286887 AL355881.1 570467 sc-eQTL 3.38e-01 0.179 0.186 0.051 cDC L2
ENSG00000028839 TBPL1 914598 sc-eQTL 3.33e-02 -0.522 0.243 0.055 gdT L2
ENSG00000112339 HBS1L -236288 sc-eQTL 9.80e-01 -0.00537 0.217 0.055 gdT L2
ENSG00000118515 SGK1 548656 sc-eQTL 9.82e-01 0.00378 0.169 0.055 gdT L2
ENSG00000135541 AHI1 -630997 sc-eQTL 2.92e-01 -0.229 0.217 0.055 gdT L2
ENSG00000028839 TBPL1 914598 sc-eQTL 5.94e-01 0.107 0.201 0.051 intMono L2
ENSG00000112339 HBS1L -236288 sc-eQTL 6.26e-01 0.103 0.211 0.051 intMono L2
ENSG00000118515 SGK1 548656 sc-eQTL 8.60e-01 -0.0252 0.142 0.051 intMono L2
ENSG00000135541 AHI1 -630997 sc-eQTL 7.93e-01 -0.0535 0.203 0.051 intMono L2
ENSG00000171408 PDE7B -984933 sc-eQTL 9.01e-01 -0.0232 0.186 0.051 intMono L2
ENSG00000286887 AL355881.1 570467 sc-eQTL 3.24e-01 -0.195 0.197 0.051 intMono L2
ENSG00000028839 TBPL1 914598 sc-eQTL 4.56e-01 0.175 0.234 0.051 pDC L2
ENSG00000112339 HBS1L -236288 sc-eQTL 1.89e-01 -0.251 0.191 0.051 pDC L2
ENSG00000118513 MYB -314540 sc-eQTL 3.80e-01 -0.145 0.165 0.051 pDC L2
ENSG00000118515 SGK1 548656 sc-eQTL 3.84e-01 0.116 0.133 0.051 pDC L2
ENSG00000135541 AHI1 -630997 sc-eQTL 3.48e-01 0.144 0.153 0.051 pDC L2
ENSG00000171408 PDE7B -984933 sc-eQTL 8.56e-01 0.0349 0.192 0.051 pDC L2
ENSG00000286887 AL355881.1 570467 sc-eQTL 2.44e-01 -0.192 0.164 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000112339 HBS1L -236288 eQTL 0.58 0.0187 0.0338 0.00136 0.0 0.0461
ENSG00000118514 ALDH8A1 -83347 eQTL 0.0326 -0.202 0.0944 0.0 0.0 0.0461
ENSG00000135541 AHI1 -630997 eQTL 5.2e-05 -0.234 0.0576 0.0 0.0 0.0461

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000135541 AHI1 -630997 3.14e-07 3.77e-07 1.12e-07 2.57e-07 1.01e-07 1.03e-07 2.86e-07 6.2e-08 1.94e-07 1.11e-07 2.47e-07 1.91e-07 3.18e-07 1.07e-07 9.12e-08 9.35e-08 8.74e-08 2.56e-07 9.97e-08 6.73e-08 1.39e-07 2.07e-07 1.81e-07 4.15e-08 3.55e-07 1.51e-07 1.31e-07 1.69e-07 1.36e-07 1.46e-07 1.43e-07 3.84e-08 4.96e-08 9.81e-08 2.7e-07 5.14e-08 1.13e-07 6.56e-08 6.33e-08 7.65e-08 5.28e-08 2e-07 3.25e-08 7.35e-09 3.41e-08 8.76e-09 7.12e-08 0.0 4.98e-08
ENSG00000220378 \N 568073 3.77e-07 6.04e-07 1.59e-07 3.58e-07 1.03e-07 1.5e-07 3.94e-07 8.11e-08 2.56e-07 1.46e-07 4.13e-07 3.11e-07 4.88e-07 1.6e-07 1.5e-07 1.33e-07 2.11e-07 3.04e-07 1.81e-07 7.29e-08 1.65e-07 2.76e-07 2.48e-07 6.65e-08 6.18e-07 1.94e-07 1.85e-07 2.24e-07 2.03e-07 2.39e-07 1.93e-07 4.58e-08 5.68e-08 1.21e-07 3.42e-07 8.17e-08 1.42e-07 8.04e-08 4.99e-08 7.55e-08 4.92e-08 3.06e-07 3.14e-08 1.08e-08 3.4e-08 1.88e-08 9.38e-08 2.89e-09 4.54e-08