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Genes within 1Mb (chr6:134475623:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 523453 sc-eQTL 9.41e-01 -0.00945 0.128 0.878 B L1
ENSG00000112339 HBS1L -627433 sc-eQTL 5.52e-01 -0.0467 0.0784 0.878 B L1
ENSG00000118515 SGK1 157511 sc-eQTL 4.47e-01 -0.068 0.0894 0.878 B L1
ENSG00000028839 TBPL1 523453 sc-eQTL 2.50e-01 -0.109 0.0945 0.878 CD4T L1
ENSG00000112339 HBS1L -627433 sc-eQTL 4.24e-01 0.055 0.0687 0.878 CD4T L1
ENSG00000118513 MYB -705685 sc-eQTL 2.37e-01 0.0898 0.0758 0.878 CD4T L1
ENSG00000118515 SGK1 157511 sc-eQTL 3.84e-01 -0.068 0.0779 0.878 CD4T L1
ENSG00000028839 TBPL1 523453 sc-eQTL 1.46e-01 -0.134 0.0922 0.878 CD8T L1
ENSG00000112339 HBS1L -627433 sc-eQTL 8.48e-01 0.0153 0.0799 0.878 CD8T L1
ENSG00000118513 MYB -705685 sc-eQTL 3.29e-01 0.0863 0.0883 0.878 CD8T L1
ENSG00000118515 SGK1 157511 sc-eQTL 4.80e-01 -0.042 0.0594 0.878 CD8T L1
ENSG00000028839 TBPL1 523453 sc-eQTL 3.98e-01 0.119 0.14 0.876 DC L1
ENSG00000112339 HBS1L -627433 sc-eQTL 4.75e-01 -0.0877 0.123 0.876 DC L1
ENSG00000118513 MYB -705685 sc-eQTL 1.64e-01 0.124 0.0888 0.876 DC L1
ENSG00000118515 SGK1 157511 sc-eQTL 3.39e-02 0.172 0.0806 0.876 DC L1
ENSG00000286887 AL355881.1 179322 sc-eQTL 3.11e-01 -0.128 0.126 0.876 DC L1
ENSG00000028839 TBPL1 523453 sc-eQTL 4.21e-01 0.0792 0.0983 0.878 Mono L1
ENSG00000112339 HBS1L -627433 sc-eQTL 3.32e-01 -0.0947 0.0974 0.878 Mono L1
ENSG00000118515 SGK1 157511 sc-eQTL 3.36e-01 -0.0699 0.0725 0.878 Mono L1
ENSG00000286887 AL355881.1 179322 sc-eQTL 4.74e-01 -0.0717 0.0999 0.878 Mono L1
ENSG00000028839 TBPL1 523453 sc-eQTL 2.91e-01 -0.114 0.108 0.88 NK L1
ENSG00000112339 HBS1L -627433 sc-eQTL 4.56e-01 -0.0663 0.0887 0.88 NK L1
ENSG00000118515 SGK1 157511 sc-eQTL 6.35e-01 0.0454 0.0954 0.88 NK L1
ENSG00000028839 TBPL1 523453 sc-eQTL 6.00e-01 -0.0669 0.127 0.878 Other_T L1
ENSG00000112339 HBS1L -627433 sc-eQTL 6.28e-01 0.0409 0.0843 0.878 Other_T L1
ENSG00000118515 SGK1 157511 sc-eQTL 4.84e-01 -0.0619 0.0884 0.878 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 523453 sc-eQTL 9.58e-01 0.00861 0.164 0.89 B_Activated L2
ENSG00000112339 HBS1L -627433 sc-eQTL 7.11e-01 0.0631 0.17 0.89 B_Activated L2
ENSG00000118515 SGK1 157511 sc-eQTL 3.58e-01 -0.131 0.142 0.89 B_Activated L2
ENSG00000028839 TBPL1 523453 sc-eQTL 3.35e-01 0.136 0.14 0.878 B_Intermediate L2
ENSG00000112339 HBS1L -627433 sc-eQTL 8.24e-01 0.0277 0.124 0.878 B_Intermediate L2
ENSG00000118515 SGK1 157511 sc-eQTL 9.18e-02 -0.217 0.128 0.878 B_Intermediate L2
ENSG00000028839 TBPL1 523453 sc-eQTL 1.93e-01 -0.179 0.137 0.877 B_Memory L2
ENSG00000112339 HBS1L -627433 sc-eQTL 7.15e-01 -0.0453 0.124 0.877 B_Memory L2
ENSG00000118515 SGK1 157511 sc-eQTL 2.14e-01 -0.143 0.115 0.877 B_Memory L2
ENSG00000028839 TBPL1 523453 sc-eQTL 3.07e-01 -0.129 0.126 0.878 B_Naive1 L2
ENSG00000112339 HBS1L -627433 sc-eQTL 2.86e-01 -0.117 0.109 0.878 B_Naive1 L2
ENSG00000118515 SGK1 157511 sc-eQTL 6.67e-01 -0.0452 0.105 0.878 B_Naive1 L2
ENSG00000028839 TBPL1 523453 sc-eQTL 8.55e-01 -0.0247 0.135 0.878 B_Naive2 L2
ENSG00000112339 HBS1L -627433 sc-eQTL 6.26e-01 -0.0608 0.124 0.878 B_Naive2 L2
ENSG00000118515 SGK1 157511 sc-eQTL 9.59e-01 -0.00635 0.123 0.878 B_Naive2 L2
ENSG00000028839 TBPL1 523453 sc-eQTL 1.85e-02 0.313 0.132 0.873 CD4_CTL L2
ENSG00000112339 HBS1L -627433 sc-eQTL 8.12e-01 -0.0326 0.137 0.873 CD4_CTL L2
ENSG00000118513 MYB -705685 sc-eQTL 9.48e-01 -0.006 0.0926 0.873 CD4_CTL L2
ENSG00000118515 SGK1 157511 sc-eQTL 4.40e-01 0.0829 0.107 0.873 CD4_CTL L2
ENSG00000028839 TBPL1 523453 sc-eQTL 7.73e-01 -0.0315 0.109 0.878 CD4_Naive L2
ENSG00000112339 HBS1L -627433 sc-eQTL 4.62e-01 0.0559 0.076 0.878 CD4_Naive L2
ENSG00000118513 MYB -705685 sc-eQTL 3.61e-01 0.0732 0.0799 0.878 CD4_Naive L2
ENSG00000118515 SGK1 157511 sc-eQTL 2.99e-01 -0.0817 0.0784 0.878 CD4_Naive L2
ENSG00000028839 TBPL1 523453 sc-eQTL 1.39e-01 -0.171 0.115 0.878 CD4_TCM L2
ENSG00000112339 HBS1L -627433 sc-eQTL 6.83e-01 0.0381 0.0933 0.878 CD4_TCM L2
ENSG00000118513 MYB -705685 sc-eQTL 8.10e-01 0.0219 0.0911 0.878 CD4_TCM L2
ENSG00000118515 SGK1 157511 sc-eQTL 1.76e-01 -0.112 0.0826 0.878 CD4_TCM L2
ENSG00000028839 TBPL1 523453 sc-eQTL 7.09e-01 0.0503 0.134 0.878 CD4_TEM L2
ENSG00000112339 HBS1L -627433 sc-eQTL 1.47e-01 -0.165 0.113 0.878 CD4_TEM L2
ENSG00000118513 MYB -705685 sc-eQTL 9.94e-01 -0.000704 0.0998 0.878 CD4_TEM L2
ENSG00000118515 SGK1 157511 sc-eQTL 9.11e-02 -0.153 0.0904 0.878 CD4_TEM L2
ENSG00000028839 TBPL1 523453 sc-eQTL 2.00e-01 -0.154 0.12 0.878 CD8_CTL L2
ENSG00000112339 HBS1L -627433 sc-eQTL 1.53e-01 0.161 0.112 0.878 CD8_CTL L2
ENSG00000118513 MYB -705685 sc-eQTL 5.79e-01 -0.0552 0.0992 0.878 CD8_CTL L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.80e-02 -0.197 0.115 0.878 CD8_CTL L2
ENSG00000028839 TBPL1 523453 sc-eQTL 2.94e-01 -0.133 0.127 0.878 CD8_Naive L2
ENSG00000112339 HBS1L -627433 sc-eQTL 6.37e-01 0.0476 0.101 0.878 CD8_Naive L2
ENSG00000118513 MYB -705685 sc-eQTL 2.29e-01 0.114 0.0942 0.878 CD8_Naive L2
ENSG00000118515 SGK1 157511 sc-eQTL 2.05e-01 -0.106 0.0836 0.878 CD8_Naive L2
ENSG00000028839 TBPL1 523453 sc-eQTL 4.49e-01 0.108 0.143 0.875 CD8_TCM L2
ENSG00000112339 HBS1L -627433 sc-eQTL 9.45e-01 -0.00847 0.123 0.875 CD8_TCM L2
ENSG00000118513 MYB -705685 sc-eQTL 5.33e-01 -0.0721 0.115 0.875 CD8_TCM L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.77e-01 -0.0164 0.106 0.875 CD8_TCM L2
ENSG00000028839 TBPL1 523453 sc-eQTL 1.92e-01 -0.171 0.13 0.874 CD8_TEM L2
ENSG00000112339 HBS1L -627433 sc-eQTL 5.90e-01 -0.0725 0.135 0.874 CD8_TEM L2
ENSG00000118513 MYB -705685 sc-eQTL 8.65e-01 -0.0182 0.107 0.874 CD8_TEM L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.57e-01 0.0226 0.125 0.874 CD8_TEM L2
ENSG00000028839 TBPL1 523453 sc-eQTL 3.63e-02 0.278 0.132 0.877 MAIT L2
ENSG00000112339 HBS1L -627433 sc-eQTL 3.40e-01 0.116 0.121 0.877 MAIT L2
ENSG00000118515 SGK1 157511 sc-eQTL 9.84e-01 -0.00177 0.0892 0.877 MAIT L2
ENSG00000028839 TBPL1 523453 sc-eQTL 9.14e-01 -0.0156 0.145 0.878 NK_CD56bright L2
ENSG00000112339 HBS1L -627433 sc-eQTL 8.94e-01 -0.0168 0.127 0.878 NK_CD56bright L2
ENSG00000118515 SGK1 157511 sc-eQTL 6.47e-01 -0.0522 0.114 0.878 NK_CD56bright L2
ENSG00000028839 TBPL1 523453 sc-eQTL 6.90e-01 -0.0467 0.117 0.879 NK_CD56dim L2
ENSG00000112339 HBS1L -627433 sc-eQTL 3.29e-01 -0.105 0.107 0.879 NK_CD56dim L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.61e-01 0.0207 0.118 0.879 NK_CD56dim L2
ENSG00000028839 TBPL1 523453 sc-eQTL 7.98e-01 0.0386 0.151 0.886 NK_HLA L2
ENSG00000112339 HBS1L -627433 sc-eQTL 8.87e-01 -0.0198 0.139 0.886 NK_HLA L2
ENSG00000118515 SGK1 157511 sc-eQTL 5.38e-01 -0.0788 0.128 0.886 NK_HLA L2
ENSG00000028839 TBPL1 523453 sc-eQTL 2.55e-01 -0.138 0.121 0.879 NK_cytokine L2
ENSG00000112339 HBS1L -627433 sc-eQTL 4.59e-01 0.0875 0.118 0.879 NK_cytokine L2
ENSG00000118515 SGK1 157511 sc-eQTL 2.12e-01 0.149 0.119 0.879 NK_cytokine L2
ENSG00000028839 TBPL1 523453 sc-eQTL 3.45e-03 0.479 0.16 0.867 PB L2
ENSG00000112339 HBS1L -627433 sc-eQTL 9.30e-01 -0.0116 0.132 0.867 PB L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.17e-01 -0.0309 0.133 0.867 PB L2
ENSG00000028839 TBPL1 523453 sc-eQTL 9.40e-01 -0.0103 0.136 0.876 Pro_T L2
ENSG00000112339 HBS1L -627433 sc-eQTL 1.96e-03 0.331 0.106 0.876 Pro_T L2
ENSG00000118515 SGK1 157511 sc-eQTL 6.39e-01 -0.0466 0.099 0.876 Pro_T L2
ENSG00000028839 TBPL1 523453 sc-eQTL 6.96e-02 -0.246 0.135 0.878 Treg L2
ENSG00000112339 HBS1L -627433 sc-eQTL 7.18e-01 0.0426 0.118 0.878 Treg L2
ENSG00000118513 MYB -705685 sc-eQTL 6.79e-01 -0.0422 0.102 0.878 Treg L2
ENSG00000118515 SGK1 157511 sc-eQTL 2.63e-01 -0.113 0.1 0.878 Treg L2
ENSG00000028839 TBPL1 523453 sc-eQTL 4.12e-01 0.117 0.142 0.876 cDC L2
ENSG00000112339 HBS1L -627433 sc-eQTL 7.11e-01 0.0524 0.141 0.876 cDC L2
ENSG00000118513 MYB -705685 sc-eQTL 6.33e-01 0.0488 0.102 0.876 cDC L2
ENSG00000118515 SGK1 157511 sc-eQTL 5.59e-01 0.0619 0.106 0.876 cDC L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 8.37e-01 -0.0252 0.122 0.876 cDC L2
ENSG00000028839 TBPL1 523453 sc-eQTL 7.22e-01 0.0398 0.112 0.878 cMono_IL1B L2
ENSG00000112339 HBS1L -627433 sc-eQTL 7.09e-01 -0.0409 0.109 0.878 cMono_IL1B L2
ENSG00000118515 SGK1 157511 sc-eQTL 5.03e-01 -0.0538 0.0801 0.878 cMono_IL1B L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 5.29e-01 -0.068 0.108 0.878 cMono_IL1B L2
ENSG00000028839 TBPL1 523453 sc-eQTL 5.97e-01 -0.0678 0.128 0.878 cMono_S100A L2
ENSG00000112339 HBS1L -627433 sc-eQTL 1.76e-01 -0.162 0.12 0.878 cMono_S100A L2
ENSG00000118515 SGK1 157511 sc-eQTL 7.07e-01 -0.0255 0.0676 0.878 cMono_S100A L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 8.16e-01 0.0249 0.107 0.878 cMono_S100A L2
ENSG00000028839 TBPL1 523453 sc-eQTL 5.00e-01 -0.12 0.178 0.882 gdT L2
ENSG00000112339 HBS1L -627433 sc-eQTL 1.40e-01 -0.231 0.156 0.882 gdT L2
ENSG00000118515 SGK1 157511 sc-eQTL 3.52e-01 -0.113 0.122 0.882 gdT L2
ENSG00000028839 TBPL1 523453 sc-eQTL 8.24e-01 0.029 0.13 0.882 intMono L2
ENSG00000112339 HBS1L -627433 sc-eQTL 4.26e-01 -0.109 0.136 0.882 intMono L2
ENSG00000118515 SGK1 157511 sc-eQTL 1.53e-01 -0.131 0.0917 0.882 intMono L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 6.66e-01 -0.0552 0.128 0.882 intMono L2
ENSG00000028839 TBPL1 523453 sc-eQTL 6.96e-01 -0.0552 0.141 0.885 ncMono L2
ENSG00000112339 HBS1L -627433 sc-eQTL 8.62e-01 0.0225 0.129 0.885 ncMono L2
ENSG00000118515 SGK1 157511 sc-eQTL 8.00e-01 -0.0231 0.0911 0.885 ncMono L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 8.07e-01 -0.0293 0.12 0.885 ncMono L2
ENSG00000028839 TBPL1 523453 sc-eQTL 9.12e-01 -0.0182 0.164 0.876 pDC L2
ENSG00000112339 HBS1L -627433 sc-eQTL 2.36e-01 -0.159 0.134 0.876 pDC L2
ENSG00000118513 MYB -705685 sc-eQTL 3.01e-01 0.12 0.115 0.876 pDC L2
ENSG00000118515 SGK1 157511 sc-eQTL 1.45e-01 0.136 0.0927 0.876 pDC L2
ENSG00000286887 AL355881.1 179322 sc-eQTL 4.59e-01 0.0854 0.115 0.876 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 523453 sc-eQTL 8.73e-01 0.0219 0.137 0.878 B_Memory LOneK1K
ENSG00000112339 HBS1L -627433 sc-eQTL 5.14e-01 0.0752 0.115 0.878 B_Memory LOneK1K
ENSG00000118515 SGK1 157511 sc-eQTL 8.20e-02 -0.185 0.106 0.878 B_Memory LOneK1K
ENSG00000028839 TBPL1 523453 sc-eQTL 3.67e-01 -0.114 0.126 0.878 B_Naive LOneK1K
ENSG00000112339 HBS1L -627433 sc-eQTL 3.93e-01 -0.0888 0.104 0.878 B_Naive LOneK1K
ENSG00000118515 SGK1 157511 sc-eQTL 7.16e-01 -0.0377 0.104 0.878 B_Naive LOneK1K
ENSG00000028839 TBPL1 523453 sc-eQTL 7.33e-01 0.0349 0.102 0.878 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -627433 sc-eQTL 2.65e-01 -0.111 0.0995 0.878 CD14_Mono LOneK1K
ENSG00000118515 SGK1 157511 sc-eQTL 3.36e-01 -0.0718 0.0745 0.878 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 179322 sc-eQTL 5.01e-01 -0.0689 0.102 0.878 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 523453 sc-eQTL 8.78e-01 -0.0203 0.133 0.881 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -627433 sc-eQTL 5.43e-01 0.0734 0.12 0.881 CD16_Mono LOneK1K
ENSG00000118515 SGK1 157511 sc-eQTL 2.94e-01 -0.0811 0.0771 0.881 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 179322 sc-eQTL 8.31e-01 -0.0239 0.112 0.881 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 523453 sc-eQTL 4.84e-01 -0.0753 0.107 0.879 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -627433 sc-eQTL 3.86e-01 -0.0832 0.0957 0.879 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 157511 sc-eQTL 3.85e-01 0.0934 0.107 0.879 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000112339 HBS1L -627433 eQTL 0.0479 0.0417 0.0211 0.0 0.0 0.138
ENSG00000118515 SGK1 157511 eQTL 0.0407 0.0687 0.0335 0.00143 0.0 0.138
ENSG00000220378 KRT8P42 176928 eQTL 0.0423 -0.0907 0.0446 0.0013 0.0 0.138

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina