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Genes within 1Mb (chr6:134473104:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 520934 sc-eQTL 2.50e-02 -0.205 0.0908 0.38 B L1
ENSG00000112339 HBS1L -629952 sc-eQTL 9.03e-01 -0.00685 0.0563 0.38 B L1
ENSG00000118515 SGK1 154992 sc-eQTL 6.01e-01 0.0336 0.0641 0.38 B L1
ENSG00000028839 TBPL1 520934 sc-eQTL 1.24e-01 -0.104 0.0675 0.38 CD4T L1
ENSG00000112339 HBS1L -629952 sc-eQTL 5.95e-01 -0.0262 0.0492 0.38 CD4T L1
ENSG00000118513 MYB -708204 sc-eQTL 9.77e-01 0.00155 0.0544 0.38 CD4T L1
ENSG00000118515 SGK1 154992 sc-eQTL 4.87e-01 0.0388 0.0558 0.38 CD4T L1
ENSG00000028839 TBPL1 520934 sc-eQTL 8.72e-01 0.0108 0.0668 0.38 CD8T L1
ENSG00000112339 HBS1L -629952 sc-eQTL 4.46e-01 -0.044 0.0576 0.38 CD8T L1
ENSG00000118513 MYB -708204 sc-eQTL 9.62e-01 0.00301 0.0638 0.38 CD8T L1
ENSG00000118515 SGK1 154992 sc-eQTL 1.27e-01 0.0654 0.0427 0.38 CD8T L1
ENSG00000028839 TBPL1 520934 sc-eQTL 9.35e-02 0.173 0.103 0.381 DC L1
ENSG00000112339 HBS1L -629952 sc-eQTL 8.39e-01 -0.0184 0.0902 0.381 DC L1
ENSG00000118513 MYB -708204 sc-eQTL 8.23e-01 -0.0147 0.0656 0.381 DC L1
ENSG00000118515 SGK1 154992 sc-eQTL 2.54e-01 -0.0682 0.0597 0.381 DC L1
ENSG00000286887 AL355881.1 176803 sc-eQTL 6.59e-01 0.0409 0.0925 0.381 DC L1
ENSG00000028839 TBPL1 520934 sc-eQTL 3.23e-01 0.07 0.0706 0.38 Mono L1
ENSG00000112339 HBS1L -629952 sc-eQTL 4.59e-02 0.14 0.0695 0.38 Mono L1
ENSG00000118515 SGK1 154992 sc-eQTL 7.67e-02 -0.0922 0.0519 0.38 Mono L1
ENSG00000286887 AL355881.1 176803 sc-eQTL 1.95e-01 -0.0932 0.0716 0.38 Mono L1
ENSG00000028839 TBPL1 520934 sc-eQTL 8.34e-01 -0.0161 0.0765 0.382 NK L1
ENSG00000112339 HBS1L -629952 sc-eQTL 2.70e-02 -0.138 0.062 0.382 NK L1
ENSG00000118515 SGK1 154992 sc-eQTL 8.39e-01 -0.0137 0.0674 0.382 NK L1
ENSG00000028839 TBPL1 520934 sc-eQTL 1.99e-01 -0.119 0.0922 0.38 Other_T L1
ENSG00000112339 HBS1L -629952 sc-eQTL 9.07e-01 0.00718 0.0613 0.38 Other_T L1
ENSG00000118515 SGK1 154992 sc-eQTL 2.99e-01 0.0668 0.0641 0.38 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 520934 sc-eQTL 2.60e-01 -0.12 0.106 0.38 B_Activated L2
ENSG00000112339 HBS1L -629952 sc-eQTL 2.97e-01 -0.115 0.11 0.38 B_Activated L2
ENSG00000118515 SGK1 154992 sc-eQTL 7.34e-01 0.0315 0.0925 0.38 B_Activated L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.69e-01 -0.14 0.101 0.382 B_Intermediate L2
ENSG00000112339 HBS1L -629952 sc-eQTL 3.73e-01 -0.08 0.0897 0.382 B_Intermediate L2
ENSG00000118515 SGK1 154992 sc-eQTL 4.03e-01 -0.0778 0.0929 0.382 B_Intermediate L2
ENSG00000028839 TBPL1 520934 sc-eQTL 2.76e-01 -0.106 0.0971 0.384 B_Memory L2
ENSG00000112339 HBS1L -629952 sc-eQTL 6.88e-01 0.0353 0.0876 0.384 B_Memory L2
ENSG00000118515 SGK1 154992 sc-eQTL 8.16e-02 -0.141 0.0809 0.384 B_Memory L2
ENSG00000028839 TBPL1 520934 sc-eQTL 3.24e-01 -0.0901 0.091 0.38 B_Naive1 L2
ENSG00000112339 HBS1L -629952 sc-eQTL 5.05e-01 -0.0529 0.0792 0.38 B_Naive1 L2
ENSG00000118515 SGK1 154992 sc-eQTL 6.70e-01 0.0324 0.0758 0.38 B_Naive1 L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.14e-01 -0.153 0.0963 0.382 B_Naive2 L2
ENSG00000112339 HBS1L -629952 sc-eQTL 7.58e-01 0.0276 0.0892 0.382 B_Naive2 L2
ENSG00000118515 SGK1 154992 sc-eQTL 7.75e-01 0.0253 0.0884 0.382 B_Naive2 L2
ENSG00000028839 TBPL1 520934 sc-eQTL 9.05e-01 -0.0118 0.0988 0.377 CD4_CTL L2
ENSG00000112339 HBS1L -629952 sc-eQTL 9.34e-01 -0.00835 0.101 0.377 CD4_CTL L2
ENSG00000118513 MYB -708204 sc-eQTL 3.95e-01 0.0583 0.0683 0.377 CD4_CTL L2
ENSG00000118515 SGK1 154992 sc-eQTL 2.34e-01 -0.0943 0.079 0.377 CD4_CTL L2
ENSG00000028839 TBPL1 520934 sc-eQTL 9.21e-01 0.00769 0.0772 0.38 CD4_Naive L2
ENSG00000112339 HBS1L -629952 sc-eQTL 6.63e-01 -0.0235 0.0539 0.38 CD4_Naive L2
ENSG00000118513 MYB -708204 sc-eQTL 8.87e-01 -0.00807 0.0567 0.38 CD4_Naive L2
ENSG00000118515 SGK1 154992 sc-eQTL 3.46e-01 0.0525 0.0556 0.38 CD4_Naive L2
ENSG00000028839 TBPL1 520934 sc-eQTL 4.13e-02 -0.169 0.0823 0.38 CD4_TCM L2
ENSG00000112339 HBS1L -629952 sc-eQTL 8.03e-01 0.0168 0.0673 0.38 CD4_TCM L2
ENSG00000118513 MYB -708204 sc-eQTL 1.70e-01 -0.09 0.0654 0.38 CD4_TCM L2
ENSG00000118515 SGK1 154992 sc-eQTL 7.12e-01 0.0221 0.0598 0.38 CD4_TCM L2
ENSG00000028839 TBPL1 520934 sc-eQTL 7.69e-02 -0.172 0.0965 0.38 CD4_TEM L2
ENSG00000112339 HBS1L -629952 sc-eQTL 1.63e-01 -0.114 0.0818 0.38 CD4_TEM L2
ENSG00000118513 MYB -708204 sc-eQTL 1.45e-01 -0.105 0.0718 0.38 CD4_TEM L2
ENSG00000118515 SGK1 154992 sc-eQTL 5.27e-01 0.0416 0.0658 0.38 CD4_TEM L2
ENSG00000028839 TBPL1 520934 sc-eQTL 5.74e-01 0.0485 0.086 0.38 CD8_CTL L2
ENSG00000112339 HBS1L -629952 sc-eQTL 2.13e-02 0.185 0.0796 0.38 CD8_CTL L2
ENSG00000118513 MYB -708204 sc-eQTL 9.69e-01 -0.00276 0.0711 0.38 CD8_CTL L2
ENSG00000118515 SGK1 154992 sc-eQTL 2.24e-01 -0.1 0.0824 0.38 CD8_CTL L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.93e-01 -0.118 0.0906 0.38 CD8_Naive L2
ENSG00000112339 HBS1L -629952 sc-eQTL 1.09e-01 -0.115 0.0717 0.38 CD8_Naive L2
ENSG00000118513 MYB -708204 sc-eQTL 7.31e-01 -0.0233 0.0677 0.38 CD8_Naive L2
ENSG00000118515 SGK1 154992 sc-eQTL 3.40e-01 0.0573 0.06 0.38 CD8_Naive L2
ENSG00000028839 TBPL1 520934 sc-eQTL 8.39e-01 -0.021 0.103 0.384 CD8_TCM L2
ENSG00000112339 HBS1L -629952 sc-eQTL 5.07e-01 -0.0588 0.0885 0.384 CD8_TCM L2
ENSG00000118513 MYB -708204 sc-eQTL 4.72e-01 -0.06 0.0833 0.384 CD8_TCM L2
ENSG00000118515 SGK1 154992 sc-eQTL 9.96e-01 -0.000356 0.0767 0.384 CD8_TCM L2
ENSG00000028839 TBPL1 520934 sc-eQTL 7.29e-01 -0.032 0.0923 0.384 CD8_TEM L2
ENSG00000112339 HBS1L -629952 sc-eQTL 1.03e-01 -0.154 0.0943 0.384 CD8_TEM L2
ENSG00000118513 MYB -708204 sc-eQTL 8.26e-01 -0.0166 0.0756 0.384 CD8_TEM L2
ENSG00000118515 SGK1 154992 sc-eQTL 6.07e-01 -0.0455 0.0882 0.384 CD8_TEM L2
ENSG00000028839 TBPL1 520934 sc-eQTL 4.89e-01 -0.0681 0.0983 0.374 MAIT L2
ENSG00000112339 HBS1L -629952 sc-eQTL 6.20e-01 -0.0443 0.0892 0.374 MAIT L2
ENSG00000118515 SGK1 154992 sc-eQTL 7.39e-01 -0.0219 0.0658 0.374 MAIT L2
ENSG00000028839 TBPL1 520934 sc-eQTL 7.08e-01 -0.0382 0.102 0.387 NK_CD56bright L2
ENSG00000112339 HBS1L -629952 sc-eQTL 4.35e-01 -0.0694 0.0887 0.387 NK_CD56bright L2
ENSG00000118515 SGK1 154992 sc-eQTL 9.78e-01 0.00219 0.0798 0.387 NK_CD56bright L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.73e-01 -0.112 0.0821 0.381 NK_CD56dim L2
ENSG00000112339 HBS1L -629952 sc-eQTL 2.13e-01 -0.094 0.0752 0.381 NK_CD56dim L2
ENSG00000118515 SGK1 154992 sc-eQTL 7.50e-01 -0.0264 0.083 0.381 NK_CD56dim L2
ENSG00000028839 TBPL1 520934 sc-eQTL 9.41e-01 -0.00753 0.101 0.388 NK_HLA L2
ENSG00000112339 HBS1L -629952 sc-eQTL 6.30e-01 -0.045 0.0934 0.388 NK_HLA L2
ENSG00000118515 SGK1 154992 sc-eQTL 8.72e-01 -0.0139 0.0861 0.388 NK_HLA L2
ENSG00000028839 TBPL1 520934 sc-eQTL 9.94e-01 0.000693 0.0849 0.381 NK_cytokine L2
ENSG00000112339 HBS1L -629952 sc-eQTL 2.26e-01 -0.0999 0.0822 0.381 NK_cytokine L2
ENSG00000118515 SGK1 154992 sc-eQTL 9.54e-01 0.00487 0.0835 0.381 NK_cytokine L2
ENSG00000028839 TBPL1 520934 sc-eQTL 5.56e-01 0.0745 0.126 0.341 PB L2
ENSG00000112339 HBS1L -629952 sc-eQTL 7.29e-01 0.0347 0.1 0.341 PB L2
ENSG00000118515 SGK1 154992 sc-eQTL 6.52e-01 0.0455 0.101 0.341 PB L2
ENSG00000028839 TBPL1 520934 sc-eQTL 3.47e-01 -0.0902 0.0958 0.378 Pro_T L2
ENSG00000112339 HBS1L -629952 sc-eQTL 1.34e-01 0.114 0.0757 0.378 Pro_T L2
ENSG00000118515 SGK1 154992 sc-eQTL 5.26e-01 0.0443 0.0697 0.378 Pro_T L2
ENSG00000028839 TBPL1 520934 sc-eQTL 7.54e-01 0.0311 0.099 0.38 Treg L2
ENSG00000112339 HBS1L -629952 sc-eQTL 3.27e-01 -0.084 0.0854 0.38 Treg L2
ENSG00000118513 MYB -708204 sc-eQTL 9.61e-01 -0.00367 0.0741 0.38 Treg L2
ENSG00000118515 SGK1 154992 sc-eQTL 8.88e-01 0.0103 0.0732 0.38 Treg L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.10e-01 0.166 0.104 0.383 cDC L2
ENSG00000112339 HBS1L -629952 sc-eQTL 5.74e-01 0.0584 0.104 0.383 cDC L2
ENSG00000118513 MYB -708204 sc-eQTL 6.12e-02 -0.14 0.0741 0.383 cDC L2
ENSG00000118515 SGK1 154992 sc-eQTL 4.41e-02 -0.155 0.0767 0.383 cDC L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 8.87e-01 0.0127 0.0897 0.383 cDC L2
ENSG00000028839 TBPL1 520934 sc-eQTL 8.35e-01 -0.0169 0.081 0.38 cMono_IL1B L2
ENSG00000112339 HBS1L -629952 sc-eQTL 6.67e-01 0.034 0.0791 0.38 cMono_IL1B L2
ENSG00000118515 SGK1 154992 sc-eQTL 3.69e-02 -0.121 0.0574 0.38 cMono_IL1B L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 7.53e-02 -0.139 0.0776 0.38 cMono_IL1B L2
ENSG00000028839 TBPL1 520934 sc-eQTL 9.97e-01 -0.000372 0.0919 0.38 cMono_S100A L2
ENSG00000112339 HBS1L -629952 sc-eQTL 1.76e-01 0.117 0.0859 0.38 cMono_S100A L2
ENSG00000118515 SGK1 154992 sc-eQTL 5.74e-01 -0.0273 0.0485 0.38 cMono_S100A L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 1.61e-01 -0.108 0.0765 0.38 cMono_S100A L2
ENSG00000028839 TBPL1 520934 sc-eQTL 7.70e-01 -0.0349 0.119 0.403 gdT L2
ENSG00000112339 HBS1L -629952 sc-eQTL 9.94e-01 -0.000769 0.105 0.403 gdT L2
ENSG00000118515 SGK1 154992 sc-eQTL 1.41e-01 0.12 0.0808 0.403 gdT L2
ENSG00000028839 TBPL1 520934 sc-eQTL 6.95e-01 0.0372 0.0949 0.378 intMono L2
ENSG00000112339 HBS1L -629952 sc-eQTL 7.24e-01 0.0352 0.0996 0.378 intMono L2
ENSG00000118515 SGK1 154992 sc-eQTL 5.94e-02 -0.126 0.0666 0.378 intMono L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 7.92e-01 0.0246 0.0932 0.378 intMono L2
ENSG00000028839 TBPL1 520934 sc-eQTL 5.93e-01 0.052 0.0971 0.385 ncMono L2
ENSG00000112339 HBS1L -629952 sc-eQTL 4.84e-02 0.175 0.0881 0.385 ncMono L2
ENSG00000118515 SGK1 154992 sc-eQTL 1.03e-01 -0.102 0.0624 0.385 ncMono L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 9.36e-01 -0.00672 0.0829 0.385 ncMono L2
ENSG00000028839 TBPL1 520934 sc-eQTL 1.57e-01 0.163 0.114 0.39 pDC L2
ENSG00000112339 HBS1L -629952 sc-eQTL 2.09e-02 -0.216 0.0926 0.39 pDC L2
ENSG00000118513 MYB -708204 sc-eQTL 4.51e-01 0.0612 0.081 0.39 pDC L2
ENSG00000118515 SGK1 154992 sc-eQTL 9.71e-01 0.00237 0.0655 0.39 pDC L2
ENSG00000286887 AL355881.1 176803 sc-eQTL 9.92e-02 0.133 0.0802 0.39 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 520934 sc-eQTL 5.90e-02 -0.184 0.0972 0.38 B_Memory LOneK1K
ENSG00000112339 HBS1L -629952 sc-eQTL 9.52e-01 -0.00491 0.082 0.38 B_Memory LOneK1K
ENSG00000118515 SGK1 154992 sc-eQTL 4.59e-01 -0.0563 0.0759 0.38 B_Memory LOneK1K
ENSG00000028839 TBPL1 520934 sc-eQTL 1.54e-01 -0.13 0.0906 0.38 B_Naive LOneK1K
ENSG00000112339 HBS1L -629952 sc-eQTL 6.94e-01 -0.0295 0.0748 0.38 B_Naive LOneK1K
ENSG00000118515 SGK1 154992 sc-eQTL 6.95e-01 0.0292 0.0745 0.38 B_Naive LOneK1K
ENSG00000028839 TBPL1 520934 sc-eQTL 9.33e-01 0.00615 0.0733 0.38 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -629952 sc-eQTL 1.86e-01 0.0946 0.0712 0.38 CD14_Mono LOneK1K
ENSG00000118515 SGK1 154992 sc-eQTL 6.26e-02 -0.0993 0.0531 0.38 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 176803 sc-eQTL 6.71e-02 -0.134 0.0727 0.38 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 520934 sc-eQTL 2.72e-01 0.103 0.0932 0.381 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -629952 sc-eQTL 2.32e-02 0.192 0.0838 0.381 CD16_Mono LOneK1K
ENSG00000118515 SGK1 154992 sc-eQTL 1.67e-01 -0.0751 0.0542 0.381 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 176803 sc-eQTL 4.63e-01 0.058 0.0788 0.381 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 520934 sc-eQTL 4.94e-01 -0.0519 0.0757 0.381 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -629952 sc-eQTL 7.42e-02 -0.121 0.0672 0.381 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 154992 sc-eQTL 8.87e-01 -0.0108 0.076 0.381 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000118514 ALDH8A1 -477011 eQTL 0.0231 -0.0964 0.0423 0.0 0.0 0.369

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina