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Genes within 1Mb (chr6:134469345:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 517175 sc-eQTL 2.87e-02 0.185 0.0839 0.502 B L1
ENSG00000112339 HBS1L -633711 sc-eQTL 5.85e-01 -0.0284 0.052 0.502 B L1
ENSG00000118515 SGK1 151233 sc-eQTL 1.55e-01 -0.0841 0.059 0.502 B L1
ENSG00000028839 TBPL1 517175 sc-eQTL 4.24e-01 0.0502 0.0627 0.502 CD4T L1
ENSG00000112339 HBS1L -633711 sc-eQTL 3.75e-01 0.0404 0.0454 0.502 CD4T L1
ENSG00000118513 MYB -711963 sc-eQTL 8.51e-01 0.00949 0.0504 0.502 CD4T L1
ENSG00000118515 SGK1 151233 sc-eQTL 2.41e-01 -0.0605 0.0515 0.502 CD4T L1
ENSG00000028839 TBPL1 517175 sc-eQTL 3.00e-01 -0.0637 0.0613 0.502 CD8T L1
ENSG00000112339 HBS1L -633711 sc-eQTL 5.12e-01 0.0348 0.053 0.502 CD8T L1
ENSG00000118513 MYB -711963 sc-eQTL 6.36e-01 0.0279 0.0587 0.502 CD8T L1
ENSG00000118515 SGK1 151233 sc-eQTL 6.54e-02 -0.0725 0.0392 0.502 CD8T L1
ENSG00000028839 TBPL1 517175 sc-eQTL 1.18e-01 -0.154 0.0985 0.502 DC L1
ENSG00000112339 HBS1L -633711 sc-eQTL 5.62e-01 -0.0502 0.0864 0.502 DC L1
ENSG00000118513 MYB -711963 sc-eQTL 4.51e-01 0.0474 0.0628 0.502 DC L1
ENSG00000118515 SGK1 151233 sc-eQTL 3.54e-02 0.12 0.0567 0.502 DC L1
ENSG00000286887 AL355881.1 173044 sc-eQTL 1.09e-01 -0.142 0.0882 0.502 DC L1
ENSG00000028839 TBPL1 517175 sc-eQTL 8.60e-01 -0.0115 0.065 0.502 Mono L1
ENSG00000112339 HBS1L -633711 sc-eQTL 1.80e-02 -0.152 0.0636 0.502 Mono L1
ENSG00000118515 SGK1 151233 sc-eQTL 3.66e-01 0.0433 0.0479 0.502 Mono L1
ENSG00000286887 AL355881.1 173044 sc-eQTL 7.32e-01 0.0226 0.066 0.502 Mono L1
ENSG00000028839 TBPL1 517175 sc-eQTL 4.40e-01 -0.0556 0.0718 0.504 NK L1
ENSG00000112339 HBS1L -633711 sc-eQTL 1.63e-01 0.0821 0.0586 0.504 NK L1
ENSG00000118515 SGK1 151233 sc-eQTL 7.72e-01 0.0184 0.0633 0.504 NK L1
ENSG00000028839 TBPL1 517175 sc-eQTL 6.05e-01 0.0446 0.0861 0.502 Other_T L1
ENSG00000112339 HBS1L -633711 sc-eQTL 8.95e-01 0.00754 0.057 0.502 Other_T L1
ENSG00000118515 SGK1 151233 sc-eQTL 3.28e-02 -0.127 0.0591 0.502 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 517175 sc-eQTL 1.13e-01 0.157 0.0984 0.51 B_Activated L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.08e-01 0.13 0.103 0.51 B_Activated L2
ENSG00000118515 SGK1 151233 sc-eQTL 2.39e-01 -0.101 0.0859 0.51 B_Activated L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.06e-01 0.151 0.0932 0.5 B_Intermediate L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.90e-01 0.0878 0.0827 0.5 B_Intermediate L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.27e-01 -0.0682 0.0858 0.5 B_Intermediate L2
ENSG00000028839 TBPL1 517175 sc-eQTL 6.29e-01 -0.0435 0.0898 0.498 B_Memory L2
ENSG00000112339 HBS1L -633711 sc-eQTL 3.63e-01 -0.0737 0.0808 0.498 B_Memory L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.36e-01 0.0586 0.0751 0.498 B_Memory L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.92e-01 0.0453 0.0844 0.502 B_Naive1 L2
ENSG00000112339 HBS1L -633711 sc-eQTL 5.21e-01 -0.0472 0.0733 0.502 B_Naive1 L2
ENSG00000118515 SGK1 151233 sc-eQTL 3.07e-01 -0.0717 0.0701 0.502 B_Naive1 L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.31e-01 0.137 0.0902 0.5 B_Naive2 L2
ENSG00000112339 HBS1L -633711 sc-eQTL 3.40e-01 -0.0797 0.0833 0.5 B_Naive2 L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.82e-01 -0.0582 0.0826 0.5 B_Naive2 L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.24e-01 0.138 0.0897 0.5 CD4_CTL L2
ENSG00000112339 HBS1L -633711 sc-eQTL 8.58e-01 0.0166 0.0925 0.5 CD4_CTL L2
ENSG00000118513 MYB -711963 sc-eQTL 3.14e-01 -0.063 0.0624 0.5 CD4_CTL L2
ENSG00000118515 SGK1 151233 sc-eQTL 1.45e-01 0.105 0.072 0.5 CD4_CTL L2
ENSG00000028839 TBPL1 517175 sc-eQTL 9.33e-01 -0.00599 0.0713 0.502 CD4_Naive L2
ENSG00000112339 HBS1L -633711 sc-eQTL 5.64e-01 0.0287 0.0497 0.502 CD4_Naive L2
ENSG00000118513 MYB -711963 sc-eQTL 9.43e-01 0.00374 0.0524 0.502 CD4_Naive L2
ENSG00000118515 SGK1 151233 sc-eQTL 1.05e-01 -0.0832 0.0512 0.502 CD4_Naive L2
ENSG00000028839 TBPL1 517175 sc-eQTL 2.49e-01 0.0878 0.076 0.502 CD4_TCM L2
ENSG00000112339 HBS1L -633711 sc-eQTL 8.31e-01 0.0132 0.0617 0.502 CD4_TCM L2
ENSG00000118513 MYB -711963 sc-eQTL 3.67e-01 0.0544 0.0601 0.502 CD4_TCM L2
ENSG00000118515 SGK1 151233 sc-eQTL 2.28e-01 -0.0661 0.0547 0.502 CD4_TCM L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.02e-01 0.146 0.089 0.502 CD4_TEM L2
ENSG00000112339 HBS1L -633711 sc-eQTL 7.12e-01 0.0279 0.0757 0.502 CD4_TEM L2
ENSG00000118513 MYB -711963 sc-eQTL 4.71e-01 0.048 0.0664 0.502 CD4_TEM L2
ENSG00000118515 SGK1 151233 sc-eQTL 1.22e-01 -0.0936 0.0603 0.502 CD4_TEM L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.61e-01 -0.0462 0.0793 0.502 CD8_CTL L2
ENSG00000112339 HBS1L -633711 sc-eQTL 1.92e-01 -0.097 0.0741 0.502 CD8_CTL L2
ENSG00000118513 MYB -711963 sc-eQTL 5.96e-01 -0.0348 0.0655 0.502 CD8_CTL L2
ENSG00000118515 SGK1 151233 sc-eQTL 6.36e-01 -0.0361 0.0762 0.502 CD8_CTL L2
ENSG00000028839 TBPL1 517175 sc-eQTL 8.02e-01 0.0214 0.0856 0.502 CD8_Naive L2
ENSG00000112339 HBS1L -633711 sc-eQTL 1.50e-01 0.0975 0.0675 0.502 CD8_Naive L2
ENSG00000118513 MYB -711963 sc-eQTL 2.51e-01 0.0731 0.0635 0.502 CD8_Naive L2
ENSG00000118515 SGK1 151233 sc-eQTL 7.12e-02 -0.102 0.0561 0.502 CD8_Naive L2
ENSG00000028839 TBPL1 517175 sc-eQTL 3.46e-01 0.0911 0.0964 0.495 CD8_TCM L2
ENSG00000112339 HBS1L -633711 sc-eQTL 5.47e-01 0.0498 0.0827 0.495 CD8_TCM L2
ENSG00000118513 MYB -711963 sc-eQTL 8.13e-01 0.0185 0.0778 0.495 CD8_TCM L2
ENSG00000118515 SGK1 151233 sc-eQTL 9.41e-01 -0.00535 0.0716 0.495 CD8_TCM L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.48e-01 -0.0511 0.0849 0.493 CD8_TEM L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.61e-01 0.0983 0.0872 0.493 CD8_TEM L2
ENSG00000118513 MYB -711963 sc-eQTL 7.36e-01 -0.0235 0.0696 0.493 CD8_TEM L2
ENSG00000118515 SGK1 151233 sc-eQTL 1.92e-01 0.106 0.0809 0.493 CD8_TEM L2
ENSG00000028839 TBPL1 517175 sc-eQTL 3.50e-02 0.19 0.0897 0.506 MAIT L2
ENSG00000112339 HBS1L -633711 sc-eQTL 3.33e-01 0.0795 0.082 0.506 MAIT L2
ENSG00000118515 SGK1 151233 sc-eQTL 8.29e-01 -0.0131 0.0606 0.506 MAIT L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.02e-01 0.0641 0.0952 0.498 NK_CD56bright L2
ENSG00000112339 HBS1L -633711 sc-eQTL 6.07e-01 0.0428 0.0832 0.498 NK_CD56bright L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.07e-01 -0.062 0.0746 0.498 NK_CD56bright L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.80e-01 0.0428 0.0773 0.504 NK_CD56dim L2
ENSG00000112339 HBS1L -633711 sc-eQTL 5.20e-01 0.0456 0.0708 0.504 NK_CD56dim L2
ENSG00000118515 SGK1 151233 sc-eQTL 6.48e-01 0.0356 0.0778 0.504 NK_CD56dim L2
ENSG00000028839 TBPL1 517175 sc-eQTL 9.51e-01 0.00591 0.0959 0.505 NK_HLA L2
ENSG00000112339 HBS1L -633711 sc-eQTL 9.03e-01 0.0108 0.0883 0.505 NK_HLA L2
ENSG00000118515 SGK1 151233 sc-eQTL 9.00e-01 -0.0103 0.0813 0.505 NK_HLA L2
ENSG00000028839 TBPL1 517175 sc-eQTL 4.27e-01 -0.0636 0.0799 0.504 NK_cytokine L2
ENSG00000112339 HBS1L -633711 sc-eQTL 7.00e-02 0.141 0.0772 0.504 NK_cytokine L2
ENSG00000118515 SGK1 151233 sc-eQTL 3.50e-01 0.0736 0.0786 0.504 NK_cytokine L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.82e-01 0.151 0.112 0.533 PB L2
ENSG00000112339 HBS1L -633711 sc-eQTL 7.58e-01 -0.0277 0.0896 0.533 PB L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.90e-01 -0.0624 0.0901 0.533 PB L2
ENSG00000028839 TBPL1 517175 sc-eQTL 3.80e-01 0.0787 0.0894 0.5 Pro_T L2
ENSG00000112339 HBS1L -633711 sc-eQTL 4.36e-01 0.0554 0.0709 0.5 Pro_T L2
ENSG00000118515 SGK1 151233 sc-eQTL 2.26e-01 -0.0788 0.0649 0.5 Pro_T L2
ENSG00000028839 TBPL1 517175 sc-eQTL 1.70e-01 -0.125 0.0909 0.502 Treg L2
ENSG00000112339 HBS1L -633711 sc-eQTL 3.56e-01 0.0728 0.0788 0.502 Treg L2
ENSG00000118513 MYB -711963 sc-eQTL 7.96e-01 -0.0176 0.0683 0.502 Treg L2
ENSG00000118515 SGK1 151233 sc-eQTL 2.17e-01 -0.0832 0.0672 0.502 Treg L2
ENSG00000028839 TBPL1 517175 sc-eQTL 2.92e-01 -0.105 0.099 0.502 cDC L2
ENSG00000112339 HBS1L -633711 sc-eQTL 4.51e-01 -0.0744 0.0984 0.502 cDC L2
ENSG00000118513 MYB -711963 sc-eQTL 5.15e-02 0.138 0.0704 0.502 cDC L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.29e-02 0.149 0.073 0.502 cDC L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 4.57e-01 -0.0635 0.0852 0.502 cDC L2
ENSG00000028839 TBPL1 517175 sc-eQTL 5.94e-01 0.0397 0.0743 0.502 cMono_IL1B L2
ENSG00000112339 HBS1L -633711 sc-eQTL 6.55e-01 -0.0324 0.0726 0.502 cMono_IL1B L2
ENSG00000118515 SGK1 151233 sc-eQTL 1.54e-01 0.0759 0.053 0.502 cMono_IL1B L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 3.94e-01 0.0612 0.0717 0.502 cMono_IL1B L2
ENSG00000028839 TBPL1 517175 sc-eQTL 9.03e-01 -0.0103 0.0845 0.502 cMono_S100A L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.09e-02 -0.182 0.0783 0.502 cMono_S100A L2
ENSG00000118515 SGK1 151233 sc-eQTL 7.51e-01 0.0142 0.0446 0.502 cMono_S100A L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 1.13e-01 0.112 0.0703 0.502 cMono_S100A L2
ENSG00000028839 TBPL1 517175 sc-eQTL 7.35e-01 -0.0377 0.111 0.488 gdT L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.01e-01 -0.125 0.0975 0.488 gdT L2
ENSG00000118515 SGK1 151233 sc-eQTL 4.44e-02 -0.152 0.075 0.488 gdT L2
ENSG00000028839 TBPL1 517175 sc-eQTL 9.75e-01 0.0028 0.0886 0.511 intMono L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.99e-01 -0.0966 0.0927 0.511 intMono L2
ENSG00000118515 SGK1 151233 sc-eQTL 6.14e-01 0.0317 0.0627 0.511 intMono L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 3.51e-01 -0.0811 0.0868 0.511 intMono L2
ENSG00000028839 TBPL1 517175 sc-eQTL 3.10e-01 -0.0926 0.091 0.505 ncMono L2
ENSG00000112339 HBS1L -633711 sc-eQTL 1.14e-01 -0.132 0.083 0.505 ncMono L2
ENSG00000118515 SGK1 151233 sc-eQTL 2.22e-01 0.0719 0.0587 0.505 ncMono L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 5.36e-01 -0.0482 0.0778 0.505 ncMono L2
ENSG00000028839 TBPL1 517175 sc-eQTL 6.11e-02 -0.209 0.111 0.5 pDC L2
ENSG00000112339 HBS1L -633711 sc-eQTL 2.65e-01 0.102 0.0911 0.5 pDC L2
ENSG00000118513 MYB -711963 sc-eQTL 5.28e-01 -0.0498 0.0787 0.5 pDC L2
ENSG00000118515 SGK1 151233 sc-eQTL 3.44e-01 0.0601 0.0634 0.5 pDC L2
ENSG00000286887 AL355881.1 173044 sc-eQTL 4.55e-01 -0.0588 0.0784 0.5 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 517175 sc-eQTL 1.49e-01 0.13 0.0897 0.502 B_Memory LOneK1K
ENSG00000112339 HBS1L -633711 sc-eQTL 7.17e-01 0.0274 0.0755 0.502 B_Memory LOneK1K
ENSG00000118515 SGK1 151233 sc-eQTL 3.47e-01 -0.0657 0.0698 0.502 B_Memory LOneK1K
ENSG00000028839 TBPL1 517175 sc-eQTL 2.81e-01 0.0912 0.0844 0.502 B_Naive LOneK1K
ENSG00000112339 HBS1L -633711 sc-eQTL 4.35e-01 -0.0544 0.0695 0.502 B_Naive LOneK1K
ENSG00000118515 SGK1 151233 sc-eQTL 2.57e-01 -0.0785 0.0692 0.502 B_Naive LOneK1K
ENSG00000028839 TBPL1 517175 sc-eQTL 7.18e-01 0.0244 0.0674 0.502 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -633711 sc-eQTL 5.21e-02 -0.127 0.0653 0.502 CD14_Mono LOneK1K
ENSG00000118515 SGK1 151233 sc-eQTL 2.67e-01 0.0547 0.0491 0.502 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 173044 sc-eQTL 3.04e-01 0.0694 0.0673 0.502 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 517175 sc-eQTL 3.26e-01 -0.0866 0.0879 0.506 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -633711 sc-eQTL 1.06e-01 -0.129 0.0795 0.506 CD16_Mono LOneK1K
ENSG00000118515 SGK1 151233 sc-eQTL 6.60e-01 0.0226 0.0513 0.506 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 173044 sc-eQTL 1.99e-01 -0.0955 0.0741 0.506 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 517175 sc-eQTL 7.16e-01 -0.026 0.0713 0.504 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -633711 sc-eQTL 2.73e-01 0.0699 0.0636 0.504 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 151233 sc-eQTL 4.20e-01 0.0577 0.0714 0.504 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000220378 KRT8P42 170650 eQTL 0.0178 -0.072 0.0303 0.00179 0.0 0.499

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina