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Genes within 1Mb (chr6:134432086:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 479916 sc-eQTL 4.87e-01 0.0618 0.0888 0.632 B L1
ENSG00000112339 HBS1L -670970 sc-eQTL 4.89e-01 -0.0377 0.0544 0.632 B L1
ENSG00000118515 SGK1 113974 sc-eQTL 4.30e-01 -0.049 0.0619 0.632 B L1
ENSG00000028839 TBPL1 479916 sc-eQTL 7.22e-01 0.0229 0.0644 0.632 CD4T L1
ENSG00000112339 HBS1L -670970 sc-eQTL 1.79e-01 0.0627 0.0465 0.632 CD4T L1
ENSG00000118513 MYB -749222 sc-eQTL 6.69e-01 0.0221 0.0516 0.632 CD4T L1
ENSG00000118515 SGK1 113974 sc-eQTL 7.39e-01 -0.0177 0.053 0.632 CD4T L1
ENSG00000028839 TBPL1 479916 sc-eQTL 1.99e-01 -0.0814 0.0632 0.632 CD8T L1
ENSG00000112339 HBS1L -670970 sc-eQTL 9.57e-01 -0.00298 0.0548 0.632 CD8T L1
ENSG00000118513 MYB -749222 sc-eQTL 4.48e-01 0.046 0.0605 0.632 CD8T L1
ENSG00000118515 SGK1 113974 sc-eQTL 2.08e-01 -0.0513 0.0406 0.632 CD8T L1
ENSG00000028839 TBPL1 479916 sc-eQTL 1.63e-01 -0.137 0.0982 0.633 DC L1
ENSG00000112339 HBS1L -670970 sc-eQTL 1.81e-01 -0.115 0.0857 0.633 DC L1
ENSG00000118513 MYB -749222 sc-eQTL 2.43e-01 0.0732 0.0624 0.633 DC L1
ENSG00000118515 SGK1 113974 sc-eQTL 1.74e-02 0.135 0.0564 0.633 DC L1
ENSG00000286887 AL355881.1 135785 sc-eQTL 7.47e-01 -0.0285 0.0884 0.633 DC L1
ENSG00000028839 TBPL1 479916 sc-eQTL 7.34e-01 0.0233 0.0687 0.632 Mono L1
ENSG00000112339 HBS1L -670970 sc-eQTL 7.23e-02 -0.122 0.0676 0.632 Mono L1
ENSG00000118515 SGK1 113974 sc-eQTL 4.20e-01 0.0409 0.0506 0.632 Mono L1
ENSG00000286887 AL355881.1 135785 sc-eQTL 7.83e-01 0.0192 0.0698 0.632 Mono L1
ENSG00000028839 TBPL1 479916 sc-eQTL 2.29e-01 0.0888 0.0736 0.633 NK L1
ENSG00000112339 HBS1L -670970 sc-eQTL 1.30e-01 0.0915 0.0602 0.633 NK L1
ENSG00000118515 SGK1 113974 sc-eQTL 9.25e-01 0.0061 0.0651 0.633 NK L1
ENSG00000028839 TBPL1 479916 sc-eQTL 7.79e-01 0.0248 0.0881 0.632 Other_T L1
ENSG00000112339 HBS1L -670970 sc-eQTL 2.78e-01 0.0633 0.0581 0.632 Other_T L1
ENSG00000118515 SGK1 113974 sc-eQTL 3.60e-01 0.056 0.0611 0.632 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 479916 sc-eQTL 3.65e-01 0.0947 0.104 0.635 B_Activated L2
ENSG00000112339 HBS1L -670970 sc-eQTL 6.13e-01 0.055 0.109 0.635 B_Activated L2
ENSG00000118515 SGK1 113974 sc-eQTL 4.21e-01 -0.0732 0.0908 0.635 B_Activated L2
ENSG00000028839 TBPL1 479916 sc-eQTL 9.67e-01 -0.00396 0.0967 0.631 B_Intermediate L2
ENSG00000112339 HBS1L -670970 sc-eQTL 5.03e-02 0.167 0.0847 0.631 B_Intermediate L2
ENSG00000118515 SGK1 113974 sc-eQTL 8.16e-01 -0.0207 0.0885 0.631 B_Intermediate L2
ENSG00000028839 TBPL1 479916 sc-eQTL 5.39e-01 -0.0568 0.0922 0.629 B_Memory L2
ENSG00000112339 HBS1L -670970 sc-eQTL 3.64e-01 -0.0754 0.0829 0.629 B_Memory L2
ENSG00000118515 SGK1 113974 sc-eQTL 1.89e-02 0.18 0.0762 0.629 B_Memory L2
ENSG00000028839 TBPL1 479916 sc-eQTL 7.19e-01 -0.0317 0.0879 0.632 B_Naive1 L2
ENSG00000112339 HBS1L -670970 sc-eQTL 6.85e-01 0.031 0.0764 0.632 B_Naive1 L2
ENSG00000118515 SGK1 113974 sc-eQTL 7.97e-01 -0.0189 0.0731 0.632 B_Naive1 L2
ENSG00000028839 TBPL1 479916 sc-eQTL 2.22e-01 0.113 0.0921 0.631 B_Naive2 L2
ENSG00000112339 HBS1L -670970 sc-eQTL 6.28e-02 -0.158 0.0844 0.631 B_Naive2 L2
ENSG00000118515 SGK1 113974 sc-eQTL 4.26e-01 -0.0672 0.0842 0.631 B_Naive2 L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.83e-01 0.0643 0.0916 0.63 CD4_CTL L2
ENSG00000112339 HBS1L -670970 sc-eQTL 5.67e-01 0.0539 0.094 0.63 CD4_CTL L2
ENSG00000118513 MYB -749222 sc-eQTL 5.33e-02 -0.122 0.0629 0.63 CD4_CTL L2
ENSG00000118515 SGK1 113974 sc-eQTL 9.77e-01 0.00212 0.0736 0.63 CD4_CTL L2
ENSG00000028839 TBPL1 479916 sc-eQTL 6.10e-01 -0.0376 0.0737 0.632 CD4_Naive L2
ENSG00000112339 HBS1L -670970 sc-eQTL 3.88e-01 0.0444 0.0514 0.632 CD4_Naive L2
ENSG00000118513 MYB -749222 sc-eQTL 2.03e-01 0.0689 0.0539 0.632 CD4_Naive L2
ENSG00000118515 SGK1 113974 sc-eQTL 5.48e-01 -0.032 0.0532 0.632 CD4_Naive L2
ENSG00000028839 TBPL1 479916 sc-eQTL 6.52e-01 0.0357 0.0789 0.632 CD4_TCM L2
ENSG00000112339 HBS1L -670970 sc-eQTL 6.48e-01 -0.0292 0.0638 0.632 CD4_TCM L2
ENSG00000118513 MYB -749222 sc-eQTL 1.00e+00 1.42e-05 0.0623 0.632 CD4_TCM L2
ENSG00000118515 SGK1 113974 sc-eQTL 8.01e-01 -0.0144 0.0568 0.632 CD4_TCM L2
ENSG00000028839 TBPL1 479916 sc-eQTL 2.07e-01 0.116 0.0917 0.632 CD4_TEM L2
ENSG00000112339 HBS1L -670970 sc-eQTL 8.88e-02 0.132 0.0772 0.632 CD4_TEM L2
ENSG00000118513 MYB -749222 sc-eQTL 3.10e-01 0.0693 0.0681 0.632 CD4_TEM L2
ENSG00000118515 SGK1 113974 sc-eQTL 7.44e-01 -0.0204 0.0623 0.632 CD4_TEM L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.36e-02 -0.162 0.08 0.632 CD8_CTL L2
ENSG00000112339 HBS1L -670970 sc-eQTL 2.63e-01 -0.0847 0.0754 0.632 CD8_CTL L2
ENSG00000118513 MYB -749222 sc-eQTL 3.51e-01 -0.0622 0.0666 0.632 CD8_CTL L2
ENSG00000118515 SGK1 113974 sc-eQTL 2.05e-01 0.0982 0.0772 0.632 CD8_CTL L2
ENSG00000028839 TBPL1 479916 sc-eQTL 7.57e-01 0.027 0.087 0.632 CD8_Naive L2
ENSG00000112339 HBS1L -670970 sc-eQTL 7.83e-01 0.019 0.069 0.632 CD8_Naive L2
ENSG00000118513 MYB -749222 sc-eQTL 1.32e-01 0.0974 0.0644 0.632 CD8_Naive L2
ENSG00000118515 SGK1 113974 sc-eQTL 3.03e-01 -0.0592 0.0573 0.632 CD8_Naive L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.95e-01 -0.0659 0.0963 0.62 CD8_TCM L2
ENSG00000112339 HBS1L -670970 sc-eQTL 4.94e-01 0.0566 0.0825 0.62 CD8_TCM L2
ENSG00000118513 MYB -749222 sc-eQTL 6.65e-01 -0.0337 0.0777 0.62 CD8_TCM L2
ENSG00000118515 SGK1 113974 sc-eQTL 8.28e-01 0.0155 0.0715 0.62 CD8_TCM L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.76e-01 -0.0626 0.0876 0.626 CD8_TEM L2
ENSG00000112339 HBS1L -670970 sc-eQTL 3.34e-01 0.0872 0.0901 0.626 CD8_TEM L2
ENSG00000118513 MYB -749222 sc-eQTL 7.00e-02 0.13 0.0713 0.626 CD8_TEM L2
ENSG00000118515 SGK1 113974 sc-eQTL 1.65e-02 0.2 0.0827 0.626 CD8_TEM L2
ENSG00000028839 TBPL1 479916 sc-eQTL 6.26e-01 0.0453 0.0927 0.636 MAIT L2
ENSG00000112339 HBS1L -670970 sc-eQTL 1.71e-01 0.115 0.0837 0.636 MAIT L2
ENSG00000118515 SGK1 113974 sc-eQTL 1.43e-02 0.151 0.0611 0.636 MAIT L2
ENSG00000028839 TBPL1 479916 sc-eQTL 5.37e-01 0.0594 0.0961 0.631 NK_CD56bright L2
ENSG00000112339 HBS1L -670970 sc-eQTL 8.95e-01 -0.0111 0.0839 0.631 NK_CD56bright L2
ENSG00000118515 SGK1 113974 sc-eQTL 8.57e-01 0.0136 0.0754 0.631 NK_CD56bright L2
ENSG00000028839 TBPL1 479916 sc-eQTL 8.78e-02 0.135 0.0787 0.634 NK_CD56dim L2
ENSG00000112339 HBS1L -670970 sc-eQTL 4.04e-01 0.0606 0.0724 0.634 NK_CD56dim L2
ENSG00000118515 SGK1 113974 sc-eQTL 2.22e-01 0.0973 0.0795 0.634 NK_CD56dim L2
ENSG00000028839 TBPL1 479916 sc-eQTL 6.91e-02 0.177 0.0968 0.63 NK_HLA L2
ENSG00000112339 HBS1L -670970 sc-eQTL 1.66e-01 0.125 0.0895 0.63 NK_HLA L2
ENSG00000118515 SGK1 113974 sc-eQTL 3.54e-01 0.0769 0.0827 0.63 NK_HLA L2
ENSG00000028839 TBPL1 479916 sc-eQTL 7.10e-01 -0.0302 0.0811 0.634 NK_cytokine L2
ENSG00000112339 HBS1L -670970 sc-eQTL 1.04e-01 0.128 0.0783 0.634 NK_cytokine L2
ENSG00000118515 SGK1 113974 sc-eQTL 6.51e-01 -0.0361 0.0797 0.634 NK_cytokine L2
ENSG00000028839 TBPL1 479916 sc-eQTL 9.11e-01 0.0127 0.113 0.663 PB L2
ENSG00000112339 HBS1L -670970 sc-eQTL 8.63e-01 -0.0155 0.0899 0.663 PB L2
ENSG00000118515 SGK1 113974 sc-eQTL 8.33e-01 -0.0192 0.0905 0.663 PB L2
ENSG00000028839 TBPL1 479916 sc-eQTL 5.05e-01 0.0612 0.0917 0.633 Pro_T L2
ENSG00000112339 HBS1L -670970 sc-eQTL 5.48e-01 0.0437 0.0727 0.633 Pro_T L2
ENSG00000118515 SGK1 113974 sc-eQTL 5.35e-01 0.0413 0.0666 0.633 Pro_T L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.37e-01 -0.0726 0.0933 0.632 Treg L2
ENSG00000112339 HBS1L -670970 sc-eQTL 2.72e-01 0.0888 0.0806 0.632 Treg L2
ENSG00000118513 MYB -749222 sc-eQTL 7.60e-01 -0.0214 0.0699 0.632 Treg L2
ENSG00000118515 SGK1 113974 sc-eQTL 3.09e-01 -0.0703 0.0689 0.632 Treg L2
ENSG00000028839 TBPL1 479916 sc-eQTL 1.45e-01 -0.143 0.0975 0.629 cDC L2
ENSG00000112339 HBS1L -670970 sc-eQTL 7.27e-01 -0.034 0.0973 0.629 cDC L2
ENSG00000118513 MYB -749222 sc-eQTL 5.50e-02 0.134 0.0696 0.629 cDC L2
ENSG00000118515 SGK1 113974 sc-eQTL 1.76e-04 0.269 0.0701 0.629 cDC L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 9.09e-01 0.00961 0.0842 0.629 cDC L2
ENSG00000028839 TBPL1 479916 sc-eQTL 4.37e-01 0.0606 0.0778 0.632 cMono_IL1B L2
ENSG00000112339 HBS1L -670970 sc-eQTL 3.87e-01 -0.0658 0.076 0.632 cMono_IL1B L2
ENSG00000118515 SGK1 113974 sc-eQTL 3.44e-01 0.0529 0.0557 0.632 cMono_IL1B L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 2.70e-01 0.0829 0.075 0.632 cMono_IL1B L2
ENSG00000028839 TBPL1 479916 sc-eQTL 9.19e-01 0.00892 0.088 0.632 cMono_S100A L2
ENSG00000112339 HBS1L -670970 sc-eQTL 2.00e-01 -0.106 0.0823 0.632 cMono_S100A L2
ENSG00000118515 SGK1 113974 sc-eQTL 7.58e-01 0.0144 0.0465 0.632 cMono_S100A L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 6.82e-01 0.0302 0.0736 0.632 cMono_S100A L2
ENSG00000028839 TBPL1 479916 sc-eQTL 1.50e-01 -0.161 0.111 0.6 gdT L2
ENSG00000112339 HBS1L -670970 sc-eQTL 4.55e-01 0.0739 0.0987 0.6 gdT L2
ENSG00000118515 SGK1 113974 sc-eQTL 3.51e-01 -0.0716 0.0765 0.6 gdT L2
ENSG00000028839 TBPL1 479916 sc-eQTL 5.63e-01 -0.0523 0.0903 0.633 intMono L2
ENSG00000112339 HBS1L -670970 sc-eQTL 1.86e-01 -0.125 0.0944 0.633 intMono L2
ENSG00000118515 SGK1 113974 sc-eQTL 5.42e-01 0.039 0.0639 0.633 intMono L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 4.91e-01 -0.0611 0.0886 0.633 intMono L2
ENSG00000028839 TBPL1 479916 sc-eQTL 1.58e-01 0.132 0.0934 0.631 ncMono L2
ENSG00000112339 HBS1L -670970 sc-eQTL 5.76e-01 -0.048 0.0859 0.631 ncMono L2
ENSG00000118515 SGK1 113974 sc-eQTL 1.13e-01 0.0959 0.0603 0.631 ncMono L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 6.71e-01 -0.0341 0.0801 0.631 ncMono L2
ENSG00000028839 TBPL1 479916 sc-eQTL 1.83e-01 -0.143 0.107 0.621 pDC L2
ENSG00000112339 HBS1L -670970 sc-eQTL 4.87e-01 0.0612 0.0879 0.621 pDC L2
ENSG00000118513 MYB -749222 sc-eQTL 8.91e-01 0.0104 0.0758 0.621 pDC L2
ENSG00000118515 SGK1 113974 sc-eQTL 6.31e-01 0.0294 0.0611 0.621 pDC L2
ENSG00000286887 AL355881.1 135785 sc-eQTL 2.98e-01 -0.0787 0.0753 0.621 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 479916 sc-eQTL 9.62e-01 0.00441 0.0929 0.632 B_Memory LOneK1K
ENSG00000112339 HBS1L -670970 sc-eQTL 5.97e-01 0.0412 0.0777 0.632 B_Memory LOneK1K
ENSG00000118515 SGK1 113974 sc-eQTL 6.61e-01 0.0316 0.072 0.632 B_Memory LOneK1K
ENSG00000028839 TBPL1 479916 sc-eQTL 6.69e-01 0.0373 0.0873 0.632 B_Naive LOneK1K
ENSG00000112339 HBS1L -670970 sc-eQTL 4.71e-01 -0.0518 0.0717 0.632 B_Naive LOneK1K
ENSG00000118515 SGK1 113974 sc-eQTL 7.65e-01 -0.0214 0.0715 0.632 B_Naive LOneK1K
ENSG00000028839 TBPL1 479916 sc-eQTL 6.34e-01 0.0339 0.071 0.632 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -670970 sc-eQTL 1.05e-01 -0.112 0.069 0.632 CD14_Mono LOneK1K
ENSG00000118515 SGK1 113974 sc-eQTL 4.06e-01 0.0431 0.0518 0.632 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 135785 sc-eQTL 4.14e-01 0.0581 0.071 0.632 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 479916 sc-eQTL 9.29e-01 0.0081 0.0909 0.636 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -670970 sc-eQTL 2.48e-01 -0.0954 0.0823 0.636 CD16_Mono LOneK1K
ENSG00000118515 SGK1 113974 sc-eQTL 3.39e-01 0.0506 0.0528 0.636 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 135785 sc-eQTL 1.77e-01 -0.104 0.0765 0.636 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 479916 sc-eQTL 3.29e-01 0.0713 0.0729 0.634 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -670970 sc-eQTL 2.09e-01 0.0819 0.065 0.634 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 113974 sc-eQTL 9.42e-01 0.00537 0.0732 0.634 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000220378 KRT8P42 133391 eQTL 0.0533 -0.061 0.0315 0.00107 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina