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Genes within 1Mb (chr6:134424187:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 472017 sc-eQTL 2.09e-01 -0.118 0.0937 0.28 B L1
ENSG00000112339 HBS1L -678869 sc-eQTL 2.69e-01 0.0637 0.0574 0.28 B L1
ENSG00000118515 SGK1 106075 sc-eQTL 9.44e-01 0.00458 0.0656 0.28 B L1
ENSG00000028839 TBPL1 472017 sc-eQTL 3.24e-01 -0.0676 0.0684 0.28 CD4T L1
ENSG00000112339 HBS1L -678869 sc-eQTL 1.96e-01 -0.0643 0.0495 0.28 CD4T L1
ENSG00000118513 MYB -757121 sc-eQTL 9.09e-01 -0.00631 0.0549 0.28 CD4T L1
ENSG00000118515 SGK1 106075 sc-eQTL 5.33e-01 0.0352 0.0563 0.28 CD4T L1
ENSG00000028839 TBPL1 472017 sc-eQTL 6.55e-01 0.0304 0.0678 0.28 CD8T L1
ENSG00000112339 HBS1L -678869 sc-eQTL 9.97e-01 -0.000213 0.0585 0.28 CD8T L1
ENSG00000118513 MYB -757121 sc-eQTL 9.08e-01 -0.00748 0.0647 0.28 CD8T L1
ENSG00000118515 SGK1 106075 sc-eQTL 1.94e-01 0.0565 0.0434 0.28 CD8T L1
ENSG00000028839 TBPL1 472017 sc-eQTL 4.91e-02 0.205 0.103 0.284 DC L1
ENSG00000112339 HBS1L -678869 sc-eQTL 5.17e-01 0.0592 0.091 0.284 DC L1
ENSG00000118513 MYB -757121 sc-eQTL 8.02e-01 -0.0166 0.0662 0.284 DC L1
ENSG00000118515 SGK1 106075 sc-eQTL 1.57e-02 -0.145 0.0596 0.284 DC L1
ENSG00000286887 AL355881.1 127886 sc-eQTL 7.24e-01 -0.0331 0.0935 0.284 DC L1
ENSG00000028839 TBPL1 472017 sc-eQTL 7.54e-01 0.0227 0.0723 0.28 Mono L1
ENSG00000112339 HBS1L -678869 sc-eQTL 2.89e-02 0.156 0.0709 0.28 Mono L1
ENSG00000118515 SGK1 106075 sc-eQTL 4.49e-01 -0.0405 0.0533 0.28 Mono L1
ENSG00000286887 AL355881.1 127886 sc-eQTL 5.25e-01 -0.0468 0.0734 0.28 Mono L1
ENSG00000028839 TBPL1 472017 sc-eQTL 4.51e-01 -0.0591 0.0782 0.279 NK L1
ENSG00000112339 HBS1L -678869 sc-eQTL 6.97e-02 -0.116 0.0637 0.279 NK L1
ENSG00000118515 SGK1 106075 sc-eQTL 4.97e-01 -0.0469 0.0689 0.279 NK L1
ENSG00000028839 TBPL1 472017 sc-eQTL 7.30e-01 -0.032 0.0925 0.28 Other_T L1
ENSG00000112339 HBS1L -678869 sc-eQTL 1.96e-02 -0.142 0.0605 0.28 Other_T L1
ENSG00000118515 SGK1 106075 sc-eQTL 3.36e-01 -0.0618 0.0641 0.28 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 472017 sc-eQTL 4.53e-01 -0.0843 0.112 0.273 B_Activated L2
ENSG00000112339 HBS1L -678869 sc-eQTL 2.65e-01 -0.13 0.116 0.273 B_Activated L2
ENSG00000118515 SGK1 106075 sc-eQTL 9.05e-01 0.0117 0.0978 0.273 B_Activated L2
ENSG00000028839 TBPL1 472017 sc-eQTL 6.62e-01 -0.0445 0.102 0.281 B_Intermediate L2
ENSG00000112339 HBS1L -678869 sc-eQTL 2.36e-01 -0.107 0.0897 0.281 B_Intermediate L2
ENSG00000118515 SGK1 106075 sc-eQTL 4.24e-01 -0.0745 0.0931 0.281 B_Intermediate L2
ENSG00000028839 TBPL1 472017 sc-eQTL 7.36e-01 -0.033 0.0977 0.282 B_Memory L2
ENSG00000112339 HBS1L -678869 sc-eQTL 5.01e-01 0.0593 0.0879 0.282 B_Memory L2
ENSG00000118515 SGK1 106075 sc-eQTL 4.85e-04 -0.282 0.0794 0.282 B_Memory L2
ENSG00000028839 TBPL1 472017 sc-eQTL 7.52e-01 0.0295 0.0932 0.28 B_Naive1 L2
ENSG00000112339 HBS1L -678869 sc-eQTL 8.51e-01 -0.0152 0.081 0.28 B_Naive1 L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.70e-01 0.0226 0.0775 0.28 B_Naive1 L2
ENSG00000028839 TBPL1 472017 sc-eQTL 1.54e-01 -0.14 0.0979 0.281 B_Naive2 L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.92e-02 0.211 0.0894 0.281 B_Naive2 L2
ENSG00000118515 SGK1 106075 sc-eQTL 2.86e-01 0.0958 0.0895 0.281 B_Naive2 L2
ENSG00000028839 TBPL1 472017 sc-eQTL 8.89e-01 0.0133 0.0952 0.282 CD4_CTL L2
ENSG00000112339 HBS1L -678869 sc-eQTL 4.21e-01 -0.0787 0.0976 0.282 CD4_CTL L2
ENSG00000118513 MYB -757121 sc-eQTL 3.38e-02 0.14 0.0653 0.282 CD4_CTL L2
ENSG00000118515 SGK1 106075 sc-eQTL 4.67e-01 -0.0557 0.0763 0.282 CD4_CTL L2
ENSG00000028839 TBPL1 472017 sc-eQTL 8.85e-01 -0.0114 0.0786 0.28 CD4_Naive L2
ENSG00000112339 HBS1L -678869 sc-eQTL 5.02e-01 -0.0369 0.0548 0.28 CD4_Naive L2
ENSG00000118513 MYB -757121 sc-eQTL 4.46e-01 -0.044 0.0576 0.28 CD4_Naive L2
ENSG00000118515 SGK1 106075 sc-eQTL 3.38e-01 0.0543 0.0566 0.28 CD4_Naive L2
ENSG00000028839 TBPL1 472017 sc-eQTL 4.77e-01 -0.0597 0.0839 0.28 CD4_TCM L2
ENSG00000112339 HBS1L -678869 sc-eQTL 4.74e-01 0.0487 0.0679 0.28 CD4_TCM L2
ENSG00000118513 MYB -757121 sc-eQTL 7.36e-01 -0.0224 0.0663 0.28 CD4_TCM L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.59e-01 0.0186 0.0605 0.28 CD4_TCM L2
ENSG00000028839 TBPL1 472017 sc-eQTL 3.42e-01 -0.0919 0.0966 0.28 CD4_TEM L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.16e-01 -0.128 0.0813 0.28 CD4_TEM L2
ENSG00000118513 MYB -757121 sc-eQTL 6.94e-01 -0.0283 0.0718 0.28 CD4_TEM L2
ENSG00000118515 SGK1 106075 sc-eQTL 5.88e-01 0.0355 0.0655 0.28 CD4_TEM L2
ENSG00000028839 TBPL1 472017 sc-eQTL 3.68e-01 0.0772 0.0856 0.28 CD8_CTL L2
ENSG00000112339 HBS1L -678869 sc-eQTL 8.85e-01 0.0116 0.0804 0.28 CD8_CTL L2
ENSG00000118513 MYB -757121 sc-eQTL 1.20e-01 0.11 0.0704 0.28 CD8_CTL L2
ENSG00000118515 SGK1 106075 sc-eQTL 2.48e-01 -0.0951 0.0821 0.28 CD8_CTL L2
ENSG00000028839 TBPL1 472017 sc-eQTL 6.77e-01 0.0383 0.092 0.28 CD8_Naive L2
ENSG00000112339 HBS1L -678869 sc-eQTL 6.78e-01 -0.0303 0.0729 0.28 CD8_Naive L2
ENSG00000118513 MYB -757121 sc-eQTL 2.18e-01 -0.0842 0.0682 0.28 CD8_Naive L2
ENSG00000118515 SGK1 106075 sc-eQTL 5.35e-01 0.0377 0.0607 0.28 CD8_Naive L2
ENSG00000028839 TBPL1 472017 sc-eQTL 8.68e-01 0.0173 0.104 0.289 CD8_TCM L2
ENSG00000112339 HBS1L -678869 sc-eQTL 3.63e-01 0.0809 0.0888 0.289 CD8_TCM L2
ENSG00000118513 MYB -757121 sc-eQTL 3.18e-01 0.0836 0.0835 0.289 CD8_TCM L2
ENSG00000118515 SGK1 106075 sc-eQTL 5.26e-01 -0.0488 0.0769 0.289 CD8_TCM L2
ENSG00000028839 TBPL1 472017 sc-eQTL 7.10e-01 0.0343 0.0922 0.283 CD8_TEM L2
ENSG00000112339 HBS1L -678869 sc-eQTL 3.37e-01 -0.0912 0.0947 0.283 CD8_TEM L2
ENSG00000118513 MYB -757121 sc-eQTL 1.67e-01 -0.104 0.0752 0.283 CD8_TEM L2
ENSG00000118515 SGK1 106075 sc-eQTL 1.29e-02 -0.218 0.0869 0.283 CD8_TEM L2
ENSG00000028839 TBPL1 472017 sc-eQTL 4.45e-01 -0.0739 0.0966 0.277 MAIT L2
ENSG00000112339 HBS1L -678869 sc-eQTL 3.09e-02 -0.188 0.0867 0.277 MAIT L2
ENSG00000118515 SGK1 106075 sc-eQTL 3.09e-02 -0.139 0.064 0.277 MAIT L2
ENSG00000028839 TBPL1 472017 sc-eQTL 3.76e-01 -0.0909 0.102 0.28 NK_CD56bright L2
ENSG00000112339 HBS1L -678869 sc-eQTL 5.15e-01 -0.0583 0.0894 0.28 NK_CD56bright L2
ENSG00000118515 SGK1 106075 sc-eQTL 3.69e-01 -0.0722 0.0803 0.28 NK_CD56bright L2
ENSG00000028839 TBPL1 472017 sc-eQTL 2.16e-01 -0.104 0.0838 0.278 NK_CD56dim L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.92e-01 -0.1 0.0768 0.278 NK_CD56dim L2
ENSG00000118515 SGK1 106075 sc-eQTL 2.96e-01 -0.0885 0.0845 0.278 NK_CD56dim L2
ENSG00000028839 TBPL1 472017 sc-eQTL 1.98e-02 -0.24 0.102 0.281 NK_HLA L2
ENSG00000112339 HBS1L -678869 sc-eQTL 6.25e-01 -0.0466 0.0953 0.281 NK_HLA L2
ENSG00000118515 SGK1 106075 sc-eQTL 2.80e-01 -0.0949 0.0876 0.281 NK_HLA L2
ENSG00000028839 TBPL1 472017 sc-eQTL 4.43e-01 0.0664 0.0865 0.278 NK_cytokine L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.00e-01 -0.138 0.0836 0.278 NK_cytokine L2
ENSG00000118515 SGK1 106075 sc-eQTL 8.47e-01 -0.0164 0.0851 0.278 NK_cytokine L2
ENSG00000028839 TBPL1 472017 sc-eQTL 2.19e-01 -0.153 0.124 0.259 PB L2
ENSG00000112339 HBS1L -678869 sc-eQTL 5.48e-01 -0.0594 0.0986 0.259 PB L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.85e-01 0.0273 0.0994 0.259 PB L2
ENSG00000028839 TBPL1 472017 sc-eQTL 7.32e-01 -0.0337 0.0982 0.28 Pro_T L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.61e-01 -0.109 0.0775 0.28 Pro_T L2
ENSG00000118515 SGK1 106075 sc-eQTL 9.30e-01 0.00623 0.0713 0.28 Pro_T L2
ENSG00000028839 TBPL1 472017 sc-eQTL 8.64e-01 -0.0169 0.0985 0.28 Treg L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.43e-01 -0.125 0.0848 0.28 Treg L2
ENSG00000118513 MYB -757121 sc-eQTL 8.84e-01 0.0107 0.0737 0.28 Treg L2
ENSG00000118515 SGK1 106075 sc-eQTL 5.59e-01 0.0426 0.0728 0.28 Treg L2
ENSG00000028839 TBPL1 472017 sc-eQTL 3.04e-01 0.107 0.104 0.288 cDC L2
ENSG00000112339 HBS1L -678869 sc-eQTL 4.71e-01 0.0747 0.103 0.288 cDC L2
ENSG00000118513 MYB -757121 sc-eQTL 2.72e-01 -0.082 0.0745 0.288 cDC L2
ENSG00000118515 SGK1 106075 sc-eQTL 9.93e-05 -0.296 0.0743 0.288 cDC L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 2.18e-01 -0.11 0.0892 0.288 cDC L2
ENSG00000028839 TBPL1 472017 sc-eQTL 8.95e-01 -0.0109 0.0825 0.28 cMono_IL1B L2
ENSG00000112339 HBS1L -678869 sc-eQTL 2.97e-01 0.084 0.0804 0.28 cMono_IL1B L2
ENSG00000118515 SGK1 106075 sc-eQTL 4.76e-01 -0.0422 0.0591 0.28 cMono_IL1B L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 2.32e-01 -0.0951 0.0794 0.28 cMono_IL1B L2
ENSG00000028839 TBPL1 472017 sc-eQTL 1.64e-01 0.13 0.0934 0.28 cMono_S100A L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.39e-01 0.13 0.0876 0.28 cMono_S100A L2
ENSG00000118515 SGK1 106075 sc-eQTL 8.31e-01 -0.0106 0.0496 0.28 cMono_S100A L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 7.36e-01 -0.0265 0.0785 0.28 cMono_S100A L2
ENSG00000028839 TBPL1 472017 sc-eQTL 5.34e-02 0.226 0.116 0.303 gdT L2
ENSG00000112339 HBS1L -678869 sc-eQTL 6.80e-01 -0.0429 0.104 0.303 gdT L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.62e-01 0.0245 0.0805 0.303 gdT L2
ENSG00000028839 TBPL1 472017 sc-eQTL 5.44e-01 0.0579 0.0952 0.284 intMono L2
ENSG00000112339 HBS1L -678869 sc-eQTL 2.54e-01 0.114 0.0997 0.284 intMono L2
ENSG00000118515 SGK1 106075 sc-eQTL 5.11e-01 -0.0444 0.0674 0.284 intMono L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 8.25e-01 -0.0207 0.0935 0.284 intMono L2
ENSG00000028839 TBPL1 472017 sc-eQTL 1.06e-01 -0.161 0.0989 0.283 ncMono L2
ENSG00000112339 HBS1L -678869 sc-eQTL 3.59e-01 0.0836 0.0909 0.283 ncMono L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.02e-02 -0.116 0.0638 0.283 ncMono L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 9.64e-01 -0.00386 0.0849 0.283 ncMono L2
ENSG00000028839 TBPL1 472017 sc-eQTL 2.00e-01 0.145 0.113 0.299 pDC L2
ENSG00000112339 HBS1L -678869 sc-eQTL 1.11e-01 -0.148 0.092 0.299 pDC L2
ENSG00000118513 MYB -757121 sc-eQTL 7.54e-01 0.025 0.0799 0.299 pDC L2
ENSG00000118515 SGK1 106075 sc-eQTL 7.49e-01 -0.0206 0.0644 0.299 pDC L2
ENSG00000286887 AL355881.1 127886 sc-eQTL 1.16e-01 0.125 0.079 0.299 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 472017 sc-eQTL 3.60e-01 -0.0899 0.098 0.28 B_Memory LOneK1K
ENSG00000112339 HBS1L -678869 sc-eQTL 7.36e-01 -0.0277 0.0822 0.28 B_Memory LOneK1K
ENSG00000118515 SGK1 106075 sc-eQTL 9.46e-02 -0.127 0.0756 0.28 B_Memory LOneK1K
ENSG00000028839 TBPL1 472017 sc-eQTL 3.99e-01 -0.0782 0.0925 0.28 B_Naive LOneK1K
ENSG00000112339 HBS1L -678869 sc-eQTL 2.38e-01 0.0898 0.076 0.28 B_Naive LOneK1K
ENSG00000118515 SGK1 106075 sc-eQTL 6.04e-01 0.0394 0.0759 0.28 B_Naive LOneK1K
ENSG00000028839 TBPL1 472017 sc-eQTL 6.12e-01 0.0382 0.0753 0.28 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -678869 sc-eQTL 3.78e-02 0.152 0.0728 0.28 CD14_Mono LOneK1K
ENSG00000118515 SGK1 106075 sc-eQTL 6.55e-01 -0.0246 0.055 0.28 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 127886 sc-eQTL 4.35e-01 -0.0588 0.0752 0.28 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 472017 sc-eQTL 6.09e-01 -0.049 0.0957 0.278 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -678869 sc-eQTL 1.80e-01 0.116 0.0866 0.278 CD16_Mono LOneK1K
ENSG00000118515 SGK1 106075 sc-eQTL 2.88e-01 -0.0592 0.0556 0.278 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 127886 sc-eQTL 5.46e-01 0.0488 0.0808 0.278 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 472017 sc-eQTL 4.96e-01 -0.0525 0.0771 0.278 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -678869 sc-eQTL 1.52e-01 -0.0987 0.0686 0.278 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 106075 sc-eQTL 5.41e-01 -0.0473 0.0773 0.278 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000028839 TBPL1 472017 eQTL 0.0497 -0.0273 0.0139 0.0 0.0 0.299

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina