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Genes within 1Mb (chr6:134338452:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 386282 sc-eQTL 9.46e-01 0.00626 0.092 0.37 B L1
ENSG00000112339 HBS1L -764604 sc-eQTL 3.21e-01 -0.0559 0.0562 0.37 B L1
ENSG00000118515 SGK1 20340 sc-eQTL 2.66e-01 -0.0714 0.064 0.37 B L1
ENSG00000028839 TBPL1 386282 sc-eQTL 3.09e-02 0.144 0.0661 0.37 CD4T L1
ENSG00000112339 HBS1L -764604 sc-eQTL 9.53e-01 0.00288 0.0484 0.37 CD4T L1
ENSG00000118513 MYB -842856 sc-eQTL 9.42e-01 -0.00387 0.0536 0.37 CD4T L1
ENSG00000118515 SGK1 20340 sc-eQTL 1.03e-01 -0.0894 0.0546 0.37 CD4T L1
ENSG00000028839 TBPL1 386282 sc-eQTL 1.80e-01 0.088 0.0654 0.37 CD8T L1
ENSG00000112339 HBS1L -764604 sc-eQTL 3.67e-01 -0.0511 0.0566 0.37 CD8T L1
ENSG00000118513 MYB -842856 sc-eQTL 8.43e-01 0.0124 0.0627 0.37 CD8T L1
ENSG00000118515 SGK1 20340 sc-eQTL 1.73e-01 -0.0574 0.042 0.37 CD8T L1
ENSG00000028839 TBPL1 386282 sc-eQTL 5.00e-01 -0.0704 0.104 0.365 DC L1
ENSG00000112339 HBS1L -764604 sc-eQTL 6.87e-01 0.0367 0.0908 0.365 DC L1
ENSG00000118513 MYB -842856 sc-eQTL 4.71e-01 -0.0477 0.066 0.365 DC L1
ENSG00000118515 SGK1 20340 sc-eQTL 1.35e-02 -0.148 0.0594 0.365 DC L1
ENSG00000286887 AL355881.1 42151 sc-eQTL 6.02e-01 -0.0488 0.0932 0.365 DC L1
ENSG00000028839 TBPL1 386282 sc-eQTL 1.40e-01 0.103 0.0697 0.37 Mono L1
ENSG00000112339 HBS1L -764604 sc-eQTL 2.56e-01 0.0788 0.0692 0.37 Mono L1
ENSG00000118515 SGK1 20340 sc-eQTL 3.70e-05 -0.209 0.0496 0.37 Mono L1
ENSG00000286887 AL355881.1 42151 sc-eQTL 1.38e-03 -0.225 0.0694 0.37 Mono L1
ENSG00000028839 TBPL1 386282 sc-eQTL 2.76e-01 0.0835 0.0765 0.371 NK L1
ENSG00000112339 HBS1L -764604 sc-eQTL 9.98e-01 0.000167 0.0629 0.371 NK L1
ENSG00000118515 SGK1 20340 sc-eQTL 8.48e-03 -0.177 0.0665 0.371 NK L1
ENSG00000028839 TBPL1 386282 sc-eQTL 2.24e-02 0.204 0.0888 0.37 Other_T L1
ENSG00000112339 HBS1L -764604 sc-eQTL 7.00e-01 -0.023 0.0595 0.37 Other_T L1
ENSG00000118515 SGK1 20340 sc-eQTL 1.13e-02 -0.157 0.0615 0.37 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 386282 sc-eQTL 5.18e-01 -0.0722 0.111 0.375 B_Activated L2
ENSG00000112339 HBS1L -764604 sc-eQTL 7.89e-01 -0.0311 0.116 0.375 B_Activated L2
ENSG00000118515 SGK1 20340 sc-eQTL 2.03e-01 -0.123 0.0965 0.375 B_Activated L2
ENSG00000028839 TBPL1 386282 sc-eQTL 8.48e-01 -0.0193 0.1 0.369 B_Intermediate L2
ENSG00000112339 HBS1L -764604 sc-eQTL 1.98e-01 0.114 0.0885 0.369 B_Intermediate L2
ENSG00000118515 SGK1 20340 sc-eQTL 8.50e-02 -0.158 0.0914 0.369 B_Intermediate L2
ENSG00000028839 TBPL1 386282 sc-eQTL 6.43e-01 0.0452 0.0972 0.369 B_Memory L2
ENSG00000112339 HBS1L -764604 sc-eQTL 8.24e-01 -0.0196 0.0876 0.369 B_Memory L2
ENSG00000118515 SGK1 20340 sc-eQTL 4.32e-01 -0.064 0.0813 0.369 B_Memory L2
ENSG00000028839 TBPL1 386282 sc-eQTL 7.09e-01 0.0343 0.0918 0.37 B_Naive1 L2
ENSG00000112339 HBS1L -764604 sc-eQTL 7.52e-01 -0.0252 0.0798 0.37 B_Naive1 L2
ENSG00000118515 SGK1 20340 sc-eQTL 7.94e-01 -0.02 0.0764 0.37 B_Naive1 L2
ENSG00000028839 TBPL1 386282 sc-eQTL 6.58e-01 -0.0429 0.0969 0.369 B_Naive2 L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.38e-01 -0.105 0.089 0.369 B_Naive2 L2
ENSG00000118515 SGK1 20340 sc-eQTL 2.66e-01 -0.0984 0.0882 0.369 B_Naive2 L2
ENSG00000028839 TBPL1 386282 sc-eQTL 6.17e-01 -0.0478 0.0956 0.382 CD4_CTL L2
ENSG00000112339 HBS1L -764604 sc-eQTL 5.66e-01 -0.0565 0.0981 0.382 CD4_CTL L2
ENSG00000118513 MYB -842856 sc-eQTL 4.11e-01 -0.0546 0.0662 0.382 CD4_CTL L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.39e-01 -0.113 0.0764 0.382 CD4_CTL L2
ENSG00000028839 TBPL1 386282 sc-eQTL 7.54e-02 0.135 0.0756 0.37 CD4_Naive L2
ENSG00000112339 HBS1L -764604 sc-eQTL 8.44e-01 -0.0105 0.0531 0.37 CD4_Naive L2
ENSG00000118513 MYB -842856 sc-eQTL 8.43e-01 -0.0111 0.0559 0.37 CD4_Naive L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.53e-01 -0.0784 0.0547 0.37 CD4_Naive L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.01e-01 0.0851 0.0821 0.37 CD4_TCM L2
ENSG00000112339 HBS1L -764604 sc-eQTL 8.41e-01 -0.0134 0.0666 0.37 CD4_TCM L2
ENSG00000118513 MYB -842856 sc-eQTL 8.89e-01 -0.00912 0.065 0.37 CD4_TCM L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.07e-02 -0.15 0.0584 0.37 CD4_TCM L2
ENSG00000028839 TBPL1 386282 sc-eQTL 4.17e-01 0.0766 0.0941 0.37 CD4_TEM L2
ENSG00000112339 HBS1L -764604 sc-eQTL 3.95e-01 0.0677 0.0795 0.37 CD4_TEM L2
ENSG00000118513 MYB -842856 sc-eQTL 9.14e-02 0.118 0.0695 0.37 CD4_TEM L2
ENSG00000118515 SGK1 20340 sc-eQTL 2.65e-02 -0.141 0.0631 0.37 CD4_TEM L2
ENSG00000028839 TBPL1 386282 sc-eQTL 9.93e-02 0.138 0.0836 0.37 CD8_CTL L2
ENSG00000112339 HBS1L -764604 sc-eQTL 1.10e-01 0.126 0.0783 0.37 CD8_CTL L2
ENSG00000118513 MYB -842856 sc-eQTL 3.43e-01 -0.0658 0.0693 0.37 CD8_CTL L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.92e-01 -0.105 0.0804 0.37 CD8_CTL L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.00e-01 0.0931 0.0896 0.37 CD8_Naive L2
ENSG00000112339 HBS1L -764604 sc-eQTL 1.30e-01 -0.108 0.0708 0.37 CD8_Naive L2
ENSG00000118513 MYB -842856 sc-eQTL 6.24e-01 0.0328 0.0668 0.37 CD8_Naive L2
ENSG00000118515 SGK1 20340 sc-eQTL 4.57e-01 -0.0442 0.0593 0.37 CD8_Naive L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.14e-01 0.103 0.102 0.368 CD8_TCM L2
ENSG00000112339 HBS1L -764604 sc-eQTL 5.77e-01 -0.049 0.0876 0.368 CD8_TCM L2
ENSG00000118513 MYB -842856 sc-eQTL 8.37e-01 0.017 0.0825 0.368 CD8_TCM L2
ENSG00000118515 SGK1 20340 sc-eQTL 4.85e-02 -0.149 0.0752 0.368 CD8_TCM L2
ENSG00000028839 TBPL1 386282 sc-eQTL 9.82e-01 -0.00206 0.0931 0.368 CD8_TEM L2
ENSG00000112339 HBS1L -764604 sc-eQTL 6.52e-01 0.0432 0.0957 0.368 CD8_TEM L2
ENSG00000118513 MYB -842856 sc-eQTL 8.40e-02 -0.131 0.0756 0.368 CD8_TEM L2
ENSG00000118515 SGK1 20340 sc-eQTL 7.28e-01 0.031 0.089 0.368 CD8_TEM L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.23e-01 0.0943 0.0952 0.37 MAIT L2
ENSG00000112339 HBS1L -764604 sc-eQTL 5.94e-01 0.0462 0.0864 0.37 MAIT L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.60e-02 -0.153 0.0629 0.37 MAIT L2
ENSG00000028839 TBPL1 386282 sc-eQTL 5.18e-01 0.0656 0.101 0.38 NK_CD56bright L2
ENSG00000112339 HBS1L -764604 sc-eQTL 4.15e-01 -0.0722 0.0883 0.38 NK_CD56bright L2
ENSG00000118515 SGK1 20340 sc-eQTL 3.06e-02 -0.171 0.0786 0.38 NK_CD56bright L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.21e-01 0.0822 0.0827 0.373 NK_CD56dim L2
ENSG00000112339 HBS1L -764604 sc-eQTL 6.77e-02 0.138 0.0753 0.373 NK_CD56dim L2
ENSG00000118515 SGK1 20340 sc-eQTL 6.31e-01 -0.0401 0.0834 0.373 NK_CD56dim L2
ENSG00000028839 TBPL1 386282 sc-eQTL 1.76e-01 0.14 0.103 0.372 NK_HLA L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.20e-01 -0.117 0.095 0.372 NK_HLA L2
ENSG00000118515 SGK1 20340 sc-eQTL 4.12e-01 -0.0721 0.0877 0.372 NK_HLA L2
ENSG00000028839 TBPL1 386282 sc-eQTL 5.32e-01 0.053 0.0848 0.373 NK_cytokine L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.76e-01 -0.0899 0.0823 0.373 NK_cytokine L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.73e-02 -0.198 0.0824 0.373 NK_cytokine L2
ENSG00000028839 TBPL1 386282 sc-eQTL 4.09e-01 0.103 0.125 0.374 PB L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.44e-01 0.116 0.0987 0.374 PB L2
ENSG00000118515 SGK1 20340 sc-eQTL 8.09e-01 -0.0242 0.1 0.374 PB L2
ENSG00000028839 TBPL1 386282 sc-eQTL 7.70e-02 0.173 0.0972 0.37 Pro_T L2
ENSG00000112339 HBS1L -764604 sc-eQTL 1.48e-01 -0.112 0.0773 0.37 Pro_T L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.38e-01 -0.105 0.0708 0.37 Pro_T L2
ENSG00000028839 TBPL1 386282 sc-eQTL 5.04e-01 0.0647 0.0966 0.37 Treg L2
ENSG00000112339 HBS1L -764604 sc-eQTL 9.59e-01 0.00428 0.0836 0.37 Treg L2
ENSG00000118513 MYB -842856 sc-eQTL 6.70e-01 -0.0308 0.0723 0.37 Treg L2
ENSG00000118515 SGK1 20340 sc-eQTL 5.88e-03 -0.195 0.0702 0.37 Treg L2
ENSG00000028839 TBPL1 386282 sc-eQTL 2.15e-01 -0.126 0.101 0.376 cDC L2
ENSG00000112339 HBS1L -764604 sc-eQTL 6.83e-01 0.0413 0.101 0.376 cDC L2
ENSG00000118513 MYB -842856 sc-eQTL 2.03e-01 -0.0927 0.0725 0.376 cDC L2
ENSG00000118515 SGK1 20340 sc-eQTL 2.10e-04 -0.275 0.0727 0.376 cDC L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 7.87e-01 -0.0237 0.0873 0.376 cDC L2
ENSG00000028839 TBPL1 386282 sc-eQTL 3.38e-01 0.0764 0.0796 0.37 cMono_IL1B L2
ENSG00000112339 HBS1L -764604 sc-eQTL 8.98e-03 0.202 0.0767 0.37 cMono_IL1B L2
ENSG00000118515 SGK1 20340 sc-eQTL 8.63e-04 -0.188 0.0557 0.37 cMono_IL1B L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 8.62e-03 -0.201 0.0758 0.37 cMono_IL1B L2
ENSG00000028839 TBPL1 386282 sc-eQTL 6.11e-01 -0.0461 0.0905 0.37 cMono_S100A L2
ENSG00000112339 HBS1L -764604 sc-eQTL 7.07e-01 -0.0319 0.0849 0.37 cMono_S100A L2
ENSG00000118515 SGK1 20340 sc-eQTL 5.43e-06 -0.213 0.0455 0.37 cMono_S100A L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 2.58e-02 -0.168 0.0748 0.37 cMono_S100A L2
ENSG00000028839 TBPL1 386282 sc-eQTL 9.54e-01 0.00686 0.119 0.379 gdT L2
ENSG00000112339 HBS1L -764604 sc-eQTL 3.51e-01 0.0982 0.105 0.379 gdT L2
ENSG00000118515 SGK1 20340 sc-eQTL 5.72e-01 0.0462 0.0815 0.379 gdT L2
ENSG00000028839 TBPL1 386282 sc-eQTL 5.31e-01 0.0586 0.0934 0.371 intMono L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.62e-01 -0.11 0.0978 0.371 intMono L2
ENSG00000118515 SGK1 20340 sc-eQTL 1.09e-02 -0.167 0.0652 0.371 intMono L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 6.76e-01 0.0384 0.0918 0.371 intMono L2
ENSG00000028839 TBPL1 386282 sc-eQTL 4.09e-01 0.0792 0.0958 0.371 ncMono L2
ENSG00000112339 HBS1L -764604 sc-eQTL 2.06e-01 -0.111 0.0875 0.371 ncMono L2
ENSG00000118515 SGK1 20340 sc-eQTL 9.21e-04 -0.203 0.0603 0.371 ncMono L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 1.64e-02 -0.195 0.0807 0.371 ncMono L2
ENSG00000028839 TBPL1 386282 sc-eQTL 5.99e-01 0.0603 0.115 0.381 pDC L2
ENSG00000112339 HBS1L -764604 sc-eQTL 6.95e-02 -0.17 0.0928 0.381 pDC L2
ENSG00000118513 MYB -842856 sc-eQTL 2.65e-01 -0.0901 0.0804 0.381 pDC L2
ENSG00000118515 SGK1 20340 sc-eQTL 8.45e-02 -0.112 0.0645 0.381 pDC L2
ENSG00000286887 AL355881.1 42151 sc-eQTL 1.84e-01 -0.107 0.0801 0.381 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 386282 sc-eQTL 9.48e-01 0.00631 0.0963 0.37 B_Memory LOneK1K
ENSG00000112339 HBS1L -764604 sc-eQTL 4.54e-01 0.0604 0.0805 0.37 B_Memory LOneK1K
ENSG00000118515 SGK1 20340 sc-eQTL 6.49e-02 -0.137 0.0741 0.37 B_Memory LOneK1K
ENSG00000028839 TBPL1 386282 sc-eQTL 6.92e-01 -0.0365 0.092 0.37 B_Naive LOneK1K
ENSG00000112339 HBS1L -764604 sc-eQTL 3.01e-01 -0.0784 0.0755 0.37 B_Naive LOneK1K
ENSG00000118515 SGK1 20340 sc-eQTL 4.70e-01 -0.0545 0.0753 0.37 B_Naive LOneK1K
ENSG00000028839 TBPL1 386282 sc-eQTL 4.00e-01 0.0611 0.0725 0.37 CD14_Mono LOneK1K
ENSG00000112339 HBS1L -764604 sc-eQTL 7.33e-02 0.127 0.0703 0.37 CD14_Mono LOneK1K
ENSG00000118515 SGK1 20340 sc-eQTL 9.51e-05 -0.203 0.0511 0.37 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 42151 sc-eQTL 6.10e-04 -0.246 0.0706 0.37 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 386282 sc-eQTL 1.31e-01 0.142 0.0933 0.371 CD16_Mono LOneK1K
ENSG00000112339 HBS1L -764604 sc-eQTL 1.87e-01 -0.112 0.0848 0.371 CD16_Mono LOneK1K
ENSG00000118515 SGK1 20340 sc-eQTL 2.34e-04 -0.198 0.0529 0.371 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 42151 sc-eQTL 4.65e-01 -0.0579 0.0791 0.371 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 386282 sc-eQTL 2.68e-01 0.0836 0.0753 0.373 NK_CD56dim LOneK1K
ENSG00000112339 HBS1L -764604 sc-eQTL 6.74e-01 0.0284 0.0675 0.373 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 20340 sc-eQTL 1.66e-01 -0.105 0.0754 0.373 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000118515 SGK1 20340 eQTL 0.00397 -0.0671 0.0232 0.00275 0.00133 0.377

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118515 SGK1 20340 5.29e-05 1.67e-05 2.91e-06 9.74e-06 2.79e-06 1.32e-05 2.37e-05 2.37e-06 1.64e-05 8.22e-06 1.92e-05 7.38e-06 2.87e-05 6.04e-06 5.14e-06 1.03e-05 8.8e-06 1.88e-05 4.31e-06 3.83e-06 8.58e-06 1.79e-05 1.77e-05 5.62e-06 2.75e-05 5.36e-06 7.94e-06 6.29e-06 1.67e-05 1.78e-05 1.05e-05 1.14e-06 1.4e-06 4.4e-06 6.46e-06 2.85e-06 1.81e-06 2e-06 2.81e-06 2.1e-06 1.2e-06 2.41e-05 3.21e-06 1.58e-07 1.92e-06 2.02e-06 2.62e-06 6.16e-07 4.43e-07