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Genes within 1Mb (chr6:134041469:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 89299 sc-eQTL 5.61e-01 -0.0518 0.0891 0.34 B L1
ENSG00000118515 SGK1 -276643 sc-eQTL 3.03e-01 -0.0642 0.0621 0.34 B L1
ENSG00000028839 TBPL1 89299 sc-eQTL 6.48e-01 0.0302 0.066 0.34 CD4T L1
ENSG00000118515 SGK1 -276643 sc-eQTL 3.18e-01 -0.0543 0.0542 0.34 CD4T L1
ENSG00000028839 TBPL1 89299 sc-eQTL 2.03e-01 0.0838 0.0656 0.34 CD8T L1
ENSG00000118515 SGK1 -276643 sc-eQTL 8.64e-01 0.00723 0.0423 0.34 CD8T L1
ENSG00000028839 TBPL1 89299 sc-eQTL 9.04e-01 0.0117 0.0971 0.342 DC L1
ENSG00000118515 SGK1 -276643 sc-eQTL 5.37e-02 -0.108 0.0557 0.342 DC L1
ENSG00000286438 AL591115.1 938341 sc-eQTL 9.34e-01 0.00577 0.0698 0.342 DC L1
ENSG00000286887 AL355881.1 -254832 sc-eQTL 3.70e-02 -0.181 0.0861 0.342 DC L1
ENSG00000028839 TBPL1 89299 sc-eQTL 6.95e-01 -0.027 0.0688 0.34 Mono L1
ENSG00000118515 SGK1 -276643 sc-eQTL 6.46e-02 -0.0935 0.0504 0.34 Mono L1
ENSG00000286887 AL355881.1 -254832 sc-eQTL 3.80e-02 -0.144 0.0692 0.34 Mono L1
ENSG00000028839 TBPL1 89299 sc-eQTL 4.37e-01 0.0589 0.0756 0.339 NK L1
ENSG00000118515 SGK1 -276643 sc-eQTL 5.09e-02 -0.13 0.0661 0.339 NK L1
ENSG00000028839 TBPL1 89299 sc-eQTL 2.95e-02 0.191 0.0871 0.34 Other_T L1
ENSG00000118515 SGK1 -276643 sc-eQTL 1.59e-01 -0.086 0.0609 0.34 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 89299 sc-eQTL 6.27e-01 -0.0502 0.103 0.342 B_Activated L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.12e-02 -0.227 0.0883 0.342 B_Activated L2
ENSG00000028839 TBPL1 89299 sc-eQTL 8.66e-01 -0.0164 0.0969 0.339 B_Intermediate L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.93e-02 -0.207 0.0876 0.339 B_Intermediate L2
ENSG00000028839 TBPL1 89299 sc-eQTL 1.88e-01 -0.123 0.0932 0.338 B_Memory L2
ENSG00000118515 SGK1 -276643 sc-eQTL 2.22e-01 -0.0957 0.078 0.338 B_Memory L2
ENSG00000028839 TBPL1 89299 sc-eQTL 6.51e-01 -0.04 0.0882 0.34 B_Naive1 L2
ENSG00000118515 SGK1 -276643 sc-eQTL 6.13e-01 -0.0371 0.0733 0.34 B_Naive1 L2
ENSG00000028839 TBPL1 89299 sc-eQTL 6.14e-01 0.0477 0.0943 0.339 B_Naive2 L2
ENSG00000118515 SGK1 -276643 sc-eQTL 7.26e-01 -0.0302 0.086 0.339 B_Naive2 L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.01e-01 0.0976 0.0941 0.341 CD4_CTL L2
ENSG00000118515 SGK1 -276643 sc-eQTL 3.94e-01 -0.0646 0.0756 0.341 CD4_CTL L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.71e-01 0.0675 0.0753 0.34 CD4_Naive L2
ENSG00000118515 SGK1 -276643 sc-eQTL 5.12e-01 -0.0358 0.0544 0.34 CD4_Naive L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.29e-01 -0.0796 0.0814 0.34 CD4_TCM L2
ENSG00000118515 SGK1 -276643 sc-eQTL 2.12e-01 -0.0732 0.0585 0.34 CD4_TCM L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.60e-01 -0.054 0.0926 0.34 CD4_TEM L2
ENSG00000118515 SGK1 -276643 sc-eQTL 2.39e-01 -0.0739 0.0625 0.34 CD4_TEM L2
ENSG00000028839 TBPL1 89299 sc-eQTL 1.54e-01 0.118 0.0826 0.34 CD8_CTL L2
ENSG00000118515 SGK1 -276643 sc-eQTL 2.39e-01 -0.0937 0.0794 0.34 CD8_CTL L2
ENSG00000028839 TBPL1 89299 sc-eQTL 7.23e-01 0.031 0.0875 0.34 CD8_Naive L2
ENSG00000118515 SGK1 -276643 sc-eQTL 3.58e-01 -0.0532 0.0577 0.34 CD8_Naive L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.99e-01 0.084 0.0995 0.34 CD8_TCM L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.12e-01 -0.0176 0.0739 0.34 CD8_TCM L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.27e-01 0.0584 0.0922 0.333 CD8_TEM L2
ENSG00000118515 SGK1 -276643 sc-eQTL 5.50e-01 0.0529 0.0882 0.333 CD8_TEM L2
ENSG00000028839 TBPL1 89299 sc-eQTL 2.05e-01 0.12 0.094 0.338 MAIT L2
ENSG00000118515 SGK1 -276643 sc-eQTL 3.99e-01 -0.0533 0.063 0.338 MAIT L2
ENSG00000028839 TBPL1 89299 sc-eQTL 8.81e-01 -0.0151 0.101 0.329 NK_CD56bright L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.09e-01 -0.127 0.0788 0.329 NK_CD56bright L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.95e-01 0.0698 0.0819 0.338 NK_CD56dim L2
ENSG00000118515 SGK1 -276643 sc-eQTL 9.83e-02 -0.136 0.082 0.338 NK_CD56dim L2
ENSG00000028839 TBPL1 89299 sc-eQTL 2.48e-01 0.114 0.0985 0.342 NK_HLA L2
ENSG00000118515 SGK1 -276643 sc-eQTL 2.24e-01 -0.102 0.0835 0.342 NK_HLA L2
ENSG00000028839 TBPL1 89299 sc-eQTL 4.89e-01 -0.0579 0.0836 0.338 NK_cytokine L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.75e-01 -0.013 0.0823 0.338 NK_cytokine L2
ENSG00000028839 TBPL1 89299 sc-eQTL 7.91e-01 0.0318 0.12 0.341 PB L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.04e-01 0.0237 0.0955 0.341 PB L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.05e-02 0.2 0.092 0.341 Pro_T L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.25e-01 0.015 0.0676 0.341 Pro_T L2
ENSG00000028839 TBPL1 89299 sc-eQTL 3.20e-01 0.0948 0.095 0.34 Treg L2
ENSG00000118515 SGK1 -276643 sc-eQTL 6.18e-01 -0.0351 0.0704 0.34 Treg L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.51e-01 0.0588 0.0985 0.329 cDC L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.90e-02 -0.171 0.0721 0.329 cDC L2
ENSG00000286438 AL591115.1 938341 sc-eQTL 4.64e-01 -0.0505 0.0687 0.329 cDC L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 2.99e-01 -0.0879 0.0844 0.329 cDC L2
ENSG00000028839 TBPL1 89299 sc-eQTL 9.45e-01 -0.00545 0.0789 0.34 cMono_IL1B L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.32e-02 -0.0977 0.0561 0.34 cMono_IL1B L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 7.65e-02 -0.135 0.0756 0.34 cMono_IL1B L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.53e-01 -0.052 0.0874 0.34 cMono_S100A L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.54e-01 -0.0658 0.046 0.34 cMono_S100A L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 4.51e-01 -0.0552 0.073 0.34 cMono_S100A L2
ENSG00000028839 TBPL1 89299 sc-eQTL 4.18e-01 0.0979 0.121 0.324 gdT L2
ENSG00000118515 SGK1 -276643 sc-eQTL 4.80e-01 0.0584 0.0826 0.324 gdT L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.99e-01 -0.0477 0.0906 0.34 intMono L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.77e-02 -0.109 0.0637 0.34 intMono L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 1.96e-01 -0.115 0.0886 0.34 intMono L2
ENSG00000028839 TBPL1 89299 sc-eQTL 5.88e-01 -0.0509 0.0939 0.333 ncMono L2
ENSG00000118515 SGK1 -276643 sc-eQTL 8.94e-02 -0.103 0.0603 0.333 ncMono L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 8.19e-02 -0.139 0.0796 0.333 ncMono L2
ENSG00000028839 TBPL1 89299 sc-eQTL 7.40e-01 0.035 0.105 0.328 pDC L2
ENSG00000118515 SGK1 -276643 sc-eQTL 1.18e-01 -0.0935 0.0595 0.328 pDC L2
ENSG00000286438 AL591115.1 938341 sc-eQTL 7.27e-01 0.0292 0.0835 0.328 pDC L2
ENSG00000286887 AL355881.1 -254832 sc-eQTL 7.31e-01 -0.0255 0.0741 0.328 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 89299 sc-eQTL 3.15e-01 -0.0941 0.0935 0.34 B_Memory LOneK1K
ENSG00000118515 SGK1 -276643 sc-eQTL 4.31e-03 -0.206 0.0713 0.34 B_Memory LOneK1K
ENSG00000028839 TBPL1 89299 sc-eQTL 8.53e-01 -0.0163 0.0882 0.34 B_Naive LOneK1K
ENSG00000118515 SGK1 -276643 sc-eQTL 4.56e-01 -0.0538 0.0722 0.34 B_Naive LOneK1K
ENSG00000028839 TBPL1 89299 sc-eQTL 5.48e-01 -0.0428 0.0712 0.34 CD14_Mono LOneK1K
ENSG00000118515 SGK1 -276643 sc-eQTL 5.48e-02 -0.0996 0.0516 0.34 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 -254832 sc-eQTL 7.83e-02 -0.125 0.0707 0.34 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 89299 sc-eQTL 8.62e-01 0.0161 0.0922 0.338 CD16_Mono LOneK1K
ENSG00000118515 SGK1 -276643 sc-eQTL 6.21e-02 -0.0998 0.0532 0.338 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 -254832 sc-eQTL 4.48e-02 -0.156 0.0771 0.338 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 89299 sc-eQTL 4.13e-01 0.0611 0.0745 0.338 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 -276643 sc-eQTL 2.58e-01 -0.0846 0.0746 0.338 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000220378 KRT8P42 -257226 eQTL 0.0346 -0.0712 0.0336 0.00149 0.0 0.349

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina