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Genes within 1Mb (chr6:133406183:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.67e-02 -0.249 0.149 0.904 B L1
ENSG00000079950 STX7 892985 sc-eQTL 1.38e-01 0.0886 0.0594 0.904 B L1
ENSG00000112303 VNN2 642724 sc-eQTL 2.68e-01 -0.124 0.112 0.904 B L1
ENSG00000112306 RPS12 591614 sc-eQTL 1.93e-01 0.0883 0.0677 0.904 B L1
ENSG00000118515 SGK1 -911929 sc-eQTL 2.84e-01 -0.112 0.104 0.904 B L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 9.95e-01 -0.000939 0.143 0.904 B L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.62e-01 -0.1 0.11 0.904 CD4T L1
ENSG00000079950 STX7 892985 sc-eQTL 3.79e-01 -0.101 0.114 0.904 CD4T L1
ENSG00000112303 VNN2 642724 sc-eQTL 7.48e-01 -0.0318 0.0991 0.904 CD4T L1
ENSG00000112306 RPS12 591614 sc-eQTL 7.07e-01 0.0253 0.0674 0.904 CD4T L1
ENSG00000118515 SGK1 -911929 sc-eQTL 9.88e-01 -0.00142 0.0906 0.904 CD4T L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 1.23e-01 -0.21 0.136 0.904 CD4T L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 6.08e-02 -0.204 0.108 0.904 CD8T L1
ENSG00000079950 STX7 892985 sc-eQTL 1.14e-01 -0.18 0.113 0.904 CD8T L1
ENSG00000112303 VNN2 642724 sc-eQTL 2.06e-01 -0.168 0.133 0.904 CD8T L1
ENSG00000112306 RPS12 591614 sc-eQTL 4.54e-01 0.0342 0.0455 0.904 CD8T L1
ENSG00000118515 SGK1 -911929 sc-eQTL 3.56e-01 -0.0648 0.0701 0.904 CD8T L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 7.82e-01 -0.0381 0.138 0.904 CD8T L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 8.38e-01 -0.0339 0.165 0.901 DC L1
ENSG00000079950 STX7 892985 sc-eQTL 9.03e-01 -0.0125 0.103 0.901 DC L1
ENSG00000093134 VNN3 671418 sc-eQTL 1.24e-01 -0.195 0.127 0.901 DC L1
ENSG00000112299 VNN1 692128 sc-eQTL 6.55e-01 -0.0614 0.137 0.901 DC L1
ENSG00000112303 VNN2 642724 sc-eQTL 3.63e-01 -0.134 0.147 0.901 DC L1
ENSG00000112306 RPS12 591614 sc-eQTL 3.19e-01 -0.0822 0.0823 0.901 DC L1
ENSG00000118515 SGK1 -911929 sc-eQTL 3.97e-02 -0.196 0.0947 0.901 DC L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 4.25e-01 -0.104 0.13 0.901 DC L1
ENSG00000286438 AL591115.1 303055 sc-eQTL 5.23e-01 -0.0759 0.119 0.901 DC L1
ENSG00000286887 AL355881.1 -890118 sc-eQTL 6.22e-01 -0.073 0.148 0.901 DC L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 7.34e-01 0.0392 0.115 0.904 Mono L1
ENSG00000079950 STX7 892985 sc-eQTL 1.94e-01 0.1 0.0769 0.904 Mono L1
ENSG00000093134 VNN3 671418 sc-eQTL 8.71e-01 0.0216 0.132 0.904 Mono L1
ENSG00000112299 VNN1 692128 sc-eQTL 6.87e-01 0.0575 0.143 0.904 Mono L1
ENSG00000112303 VNN2 642724 sc-eQTL 7.60e-02 -0.178 0.0999 0.904 Mono L1
ENSG00000112306 RPS12 591614 sc-eQTL 7.17e-01 -0.0219 0.0603 0.904 Mono L1
ENSG00000118515 SGK1 -911929 sc-eQTL 3.43e-01 -0.0807 0.085 0.904 Mono L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 4.86e-01 -0.0832 0.119 0.904 Mono L1
ENSG00000286887 AL355881.1 -890118 sc-eQTL 9.78e-02 -0.194 0.116 0.904 Mono L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.87e-01 0.111 0.128 0.903 NK L1
ENSG00000079950 STX7 892985 sc-eQTL 8.19e-02 0.206 0.118 0.903 NK L1
ENSG00000112303 VNN2 642724 sc-eQTL 9.99e-01 -0.000241 0.148 0.903 NK L1
ENSG00000112306 RPS12 591614 sc-eQTL 7.75e-01 -0.0175 0.0612 0.903 NK L1
ENSG00000118515 SGK1 -911929 sc-eQTL 7.41e-01 -0.0375 0.113 0.903 NK L1
ENSG00000028839 TBPL1 -545987 sc-eQTL 5.37e-01 0.0931 0.151 0.904 Other_T L1
ENSG00000079950 STX7 892985 sc-eQTL 7.34e-01 -0.0404 0.119 0.904 Other_T L1
ENSG00000112303 VNN2 642724 sc-eQTL 3.00e-01 -0.149 0.143 0.904 Other_T L1
ENSG00000112306 RPS12 591614 sc-eQTL 6.65e-01 -0.0247 0.0568 0.904 Other_T L1
ENSG00000118515 SGK1 -911929 sc-eQTL 7.46e-01 -0.0339 0.105 0.904 Other_T L1
ENSG00000146409 SLC18B1 592844 sc-eQTL 5.93e-02 -0.293 0.154 0.904 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -545987 sc-eQTL 5.49e-01 0.11 0.183 0.911 B_Activated L2
ENSG00000079950 STX7 892985 sc-eQTL 8.70e-01 0.0256 0.157 0.911 B_Activated L2
ENSG00000112303 VNN2 642724 sc-eQTL 4.56e-01 0.124 0.167 0.911 B_Activated L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.97e-01 -0.0116 0.0894 0.911 B_Activated L2
ENSG00000118515 SGK1 -911929 sc-eQTL 8.42e-01 0.0319 0.159 0.911 B_Activated L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 7.06e-01 0.0591 0.157 0.911 B_Activated L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.11e-01 0.168 0.165 0.903 B_Intermediate L2
ENSG00000079950 STX7 892985 sc-eQTL 4.75e-01 0.068 0.095 0.903 B_Intermediate L2
ENSG00000112303 VNN2 642724 sc-eQTL 6.33e-01 0.0686 0.143 0.903 B_Intermediate L2
ENSG00000112306 RPS12 591614 sc-eQTL 1.73e-01 0.119 0.0873 0.903 B_Intermediate L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.82e-02 -0.266 0.151 0.903 B_Intermediate L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 7.97e-01 -0.0407 0.158 0.903 B_Intermediate L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.10e-01 0.018 0.16 0.903 B_Memory L2
ENSG00000079950 STX7 892985 sc-eQTL 1.03e-03 0.375 0.113 0.903 B_Memory L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.10e-01 -0.189 0.151 0.903 B_Memory L2
ENSG00000112306 RPS12 591614 sc-eQTL 7.84e-01 0.02 0.0728 0.903 B_Memory L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.31e-01 -0.0838 0.133 0.903 B_Memory L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 6.47e-01 0.0697 0.152 0.903 B_Memory L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 1.91e-02 -0.349 0.148 0.904 B_Naive1 L2
ENSG00000079950 STX7 892985 sc-eQTL 1.55e-01 0.102 0.0716 0.904 B_Naive1 L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.16e-01 -0.173 0.139 0.904 B_Naive1 L2
ENSG00000112306 RPS12 591614 sc-eQTL 1.15e-01 0.125 0.0791 0.904 B_Naive1 L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.84e-01 0.0341 0.124 0.904 B_Naive1 L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 8.09e-01 0.0372 0.154 0.904 B_Naive1 L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.28e-02 -0.343 0.16 0.903 B_Naive2 L2
ENSG00000079950 STX7 892985 sc-eQTL 3.42e-01 0.0814 0.0855 0.903 B_Naive2 L2
ENSG00000112303 VNN2 642724 sc-eQTL 9.04e-01 0.019 0.157 0.903 B_Naive2 L2
ENSG00000112306 RPS12 591614 sc-eQTL 5.68e-02 0.158 0.0826 0.903 B_Naive2 L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.53e-01 0.0873 0.147 0.903 B_Naive2 L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 2.31e-01 -0.19 0.158 0.903 B_Naive2 L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.49e-01 0.00987 0.154 0.9 CD4_CTL L2
ENSG00000079950 STX7 892985 sc-eQTL 5.75e-01 -0.0858 0.153 0.9 CD4_CTL L2
ENSG00000112303 VNN2 642724 sc-eQTL 6.30e-01 -0.0746 0.154 0.9 CD4_CTL L2
ENSG00000112306 RPS12 591614 sc-eQTL 6.54e-01 0.032 0.0713 0.9 CD4_CTL L2
ENSG00000118515 SGK1 -911929 sc-eQTL 1.72e-01 -0.169 0.123 0.9 CD4_CTL L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 8.09e-01 0.0349 0.144 0.9 CD4_CTL L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 1.09e-01 -0.201 0.125 0.904 CD4_Naive L2
ENSG00000079950 STX7 892985 sc-eQTL 3.66e-01 -0.111 0.123 0.904 CD4_Naive L2
ENSG00000112303 VNN2 642724 sc-eQTL 5.16e-01 -0.0741 0.114 0.904 CD4_Naive L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.60e-01 0.0131 0.0739 0.904 CD4_Naive L2
ENSG00000118515 SGK1 -911929 sc-eQTL 9.08e-01 -0.0104 0.0905 0.904 CD4_Naive L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 5.17e-02 -0.276 0.141 0.904 CD4_Naive L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 8.94e-01 0.0178 0.134 0.904 CD4_TCM L2
ENSG00000079950 STX7 892985 sc-eQTL 6.09e-01 -0.0691 0.135 0.904 CD4_TCM L2
ENSG00000112303 VNN2 642724 sc-eQTL 8.12e-01 -0.0317 0.133 0.904 CD4_TCM L2
ENSG00000112306 RPS12 591614 sc-eQTL 4.90e-01 0.0477 0.0689 0.904 CD4_TCM L2
ENSG00000118515 SGK1 -911929 sc-eQTL 4.48e-01 -0.0732 0.0964 0.904 CD4_TCM L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 3.28e-01 -0.156 0.159 0.904 CD4_TCM L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.59e-01 0.143 0.156 0.904 CD4_TEM L2
ENSG00000079950 STX7 892985 sc-eQTL 2.76e-01 -0.17 0.156 0.904 CD4_TEM L2
ENSG00000112303 VNN2 642724 sc-eQTL 5.89e-01 -0.0812 0.15 0.904 CD4_TEM L2
ENSG00000112306 RPS12 591614 sc-eQTL 9.07e-01 0.00717 0.0615 0.904 CD4_TEM L2
ENSG00000118515 SGK1 -911929 sc-eQTL 4.31e-01 -0.0833 0.106 0.904 CD4_TEM L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 6.78e-01 0.0635 0.153 0.904 CD4_TEM L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 8.01e-01 0.0348 0.138 0.904 CD8_CTL L2
ENSG00000079950 STX7 892985 sc-eQTL 5.48e-01 -0.0777 0.129 0.904 CD8_CTL L2
ENSG00000112303 VNN2 642724 sc-eQTL 8.85e-01 -0.0213 0.147 0.904 CD8_CTL L2
ENSG00000112306 RPS12 591614 sc-eQTL 7.88e-01 0.0212 0.0786 0.904 CD8_CTL L2
ENSG00000118515 SGK1 -911929 sc-eQTL 9.21e-01 -0.0132 0.133 0.904 CD8_CTL L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 1.07e-01 -0.245 0.151 0.904 CD8_CTL L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 5.09e-02 -0.285 0.145 0.904 CD8_Naive L2
ENSG00000079950 STX7 892985 sc-eQTL 2.70e-01 -0.172 0.155 0.904 CD8_Naive L2
ENSG00000112303 VNN2 642724 sc-eQTL 7.20e-02 -0.241 0.133 0.904 CD8_Naive L2
ENSG00000112306 RPS12 591614 sc-eQTL 7.82e-02 0.135 0.0764 0.904 CD8_Naive L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.30e-01 -0.0334 0.0966 0.904 CD8_Naive L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 8.39e-01 -0.0314 0.154 0.904 CD8_Naive L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 4.97e-02 -0.324 0.164 0.903 CD8_TCM L2
ENSG00000079950 STX7 892985 sc-eQTL 8.23e-01 0.0343 0.153 0.903 CD8_TCM L2
ENSG00000112303 VNN2 642724 sc-eQTL 8.50e-01 0.0289 0.152 0.903 CD8_TCM L2
ENSG00000112306 RPS12 591614 sc-eQTL 6.47e-01 0.034 0.0741 0.903 CD8_TCM L2
ENSG00000118515 SGK1 -911929 sc-eQTL 4.59e-01 -0.0911 0.123 0.903 CD8_TCM L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 3.43e-01 -0.154 0.162 0.903 CD8_TCM L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 5.77e-01 -0.0839 0.15 0.9 CD8_TEM L2
ENSG00000079950 STX7 892985 sc-eQTL 9.12e-01 0.0181 0.164 0.9 CD8_TEM L2
ENSG00000112303 VNN2 642724 sc-eQTL 5.90e-01 -0.0879 0.163 0.9 CD8_TEM L2
ENSG00000112306 RPS12 591614 sc-eQTL 9.22e-01 0.00855 0.0877 0.9 CD8_TEM L2
ENSG00000118515 SGK1 -911929 sc-eQTL 1.96e-01 -0.186 0.143 0.9 CD8_TEM L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 6.81e-01 0.0681 0.166 0.9 CD8_TEM L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 7.11e-01 -0.0576 0.155 0.903 MAIT L2
ENSG00000079950 STX7 892985 sc-eQTL 2.59e-01 -0.166 0.147 0.903 MAIT L2
ENSG00000112303 VNN2 642724 sc-eQTL 5.26e-01 -0.0951 0.15 0.903 MAIT L2
ENSG00000112306 RPS12 591614 sc-eQTL 9.11e-01 0.00825 0.0738 0.903 MAIT L2
ENSG00000118515 SGK1 -911929 sc-eQTL 4.69e-01 -0.0752 0.104 0.903 MAIT L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 2.80e-02 -0.338 0.153 0.903 MAIT L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 7.68e-01 0.0489 0.166 0.902 NK_CD56bright L2
ENSG00000079950 STX7 892985 sc-eQTL 8.07e-01 -0.0375 0.154 0.902 NK_CD56bright L2
ENSG00000112303 VNN2 642724 sc-eQTL 1.69e-01 -0.214 0.156 0.902 NK_CD56bright L2
ENSG00000112306 RPS12 591614 sc-eQTL 9.84e-02 -0.144 0.0865 0.902 NK_CD56bright L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.33e-01 0.0444 0.13 0.902 NK_CD56bright L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.69e-02 0.23 0.138 0.903 NK_CD56dim L2
ENSG00000079950 STX7 892985 sc-eQTL 3.24e-01 0.126 0.127 0.903 NK_CD56dim L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.84e-01 0.17 0.159 0.903 NK_CD56dim L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.58e-01 -0.0113 0.0632 0.903 NK_CD56dim L2
ENSG00000118515 SGK1 -911929 sc-eQTL 2.80e-01 -0.151 0.14 0.903 NK_CD56dim L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 6.01e-01 0.0904 0.173 0.904 NK_HLA L2
ENSG00000079950 STX7 892985 sc-eQTL 6.34e-01 0.0749 0.157 0.904 NK_HLA L2
ENSG00000112303 VNN2 642724 sc-eQTL 4.39e-01 -0.123 0.159 0.904 NK_HLA L2
ENSG00000112306 RPS12 591614 sc-eQTL 3.18e-01 -0.0741 0.074 0.904 NK_HLA L2
ENSG00000118515 SGK1 -911929 sc-eQTL 4.65e-01 -0.107 0.146 0.904 NK_HLA L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 7.72e-01 0.0421 0.145 0.903 NK_cytokine L2
ENSG00000079950 STX7 892985 sc-eQTL 7.98e-02 0.246 0.139 0.903 NK_cytokine L2
ENSG00000112303 VNN2 642724 sc-eQTL 8.50e-01 -0.0298 0.158 0.903 NK_cytokine L2
ENSG00000112306 RPS12 591614 sc-eQTL 3.60e-01 -0.0785 0.0856 0.903 NK_cytokine L2
ENSG00000118515 SGK1 -911929 sc-eQTL 6.16e-01 -0.0716 0.143 0.903 NK_cytokine L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 8.27e-01 -0.0457 0.208 0.915 PB L2
ENSG00000079950 STX7 892985 sc-eQTL 5.45e-01 -0.09 0.148 0.915 PB L2
ENSG00000112303 VNN2 642724 sc-eQTL 3.91e-01 -0.156 0.181 0.915 PB L2
ENSG00000112306 RPS12 591614 sc-eQTL 9.97e-01 0.000434 0.103 0.915 PB L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.45e-01 0.0541 0.166 0.915 PB L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 5.16e-01 -0.125 0.193 0.915 PB L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 1.47e-01 0.234 0.161 0.907 Pro_T L2
ENSG00000079950 STX7 892985 sc-eQTL 4.48e-01 0.11 0.144 0.907 Pro_T L2
ENSG00000112303 VNN2 642724 sc-eQTL 6.36e-01 0.0733 0.155 0.907 Pro_T L2
ENSG00000112306 RPS12 591614 sc-eQTL 1.99e-01 -0.0753 0.0584 0.907 Pro_T L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.60e-01 0.0685 0.117 0.907 Pro_T L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 5.50e-01 0.0908 0.152 0.907 Pro_T L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 4.03e-01 -0.133 0.159 0.904 Treg L2
ENSG00000079950 STX7 892985 sc-eQTL 6.11e-01 0.0763 0.15 0.904 Treg L2
ENSG00000112303 VNN2 642724 sc-eQTL 3.69e-01 0.113 0.126 0.904 Treg L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.32e-01 -0.0118 0.0557 0.904 Treg L2
ENSG00000118515 SGK1 -911929 sc-eQTL 3.69e-01 0.106 0.117 0.904 Treg L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 3.21e-01 -0.156 0.157 0.904 Treg L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 1.66e-01 -0.227 0.163 0.895 cDC L2
ENSG00000079950 STX7 892985 sc-eQTL 6.66e-01 0.0556 0.129 0.895 cDC L2
ENSG00000093134 VNN3 671418 sc-eQTL 3.98e-01 -0.108 0.128 0.895 cDC L2
ENSG00000112299 VNN1 692128 sc-eQTL 9.74e-01 0.00495 0.15 0.895 cDC L2
ENSG00000112303 VNN2 642724 sc-eQTL 6.61e-02 -0.268 0.145 0.895 cDC L2
ENSG00000112306 RPS12 591614 sc-eQTL 6.79e-01 0.03 0.0723 0.895 cDC L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.29e-04 -0.416 0.118 0.895 cDC L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 1.83e-01 -0.191 0.143 0.895 cDC L2
ENSG00000286438 AL591115.1 303055 sc-eQTL 2.17e-01 -0.141 0.114 0.895 cDC L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 5.61e-01 -0.0819 0.141 0.895 cDC L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.43e-01 0.00937 0.131 0.904 cMono_IL1B L2
ENSG00000079950 STX7 892985 sc-eQTL 7.96e-01 0.0257 0.0995 0.904 cMono_IL1B L2
ENSG00000093134 VNN3 671418 sc-eQTL 9.59e-01 -0.00724 0.141 0.904 cMono_IL1B L2
ENSG00000112299 VNN1 692128 sc-eQTL 9.09e-01 -0.0163 0.142 0.904 cMono_IL1B L2
ENSG00000112303 VNN2 642724 sc-eQTL 3.71e-01 -0.102 0.113 0.904 cMono_IL1B L2
ENSG00000112306 RPS12 591614 sc-eQTL 6.39e-01 -0.0296 0.063 0.904 cMono_IL1B L2
ENSG00000118515 SGK1 -911929 sc-eQTL 1.71e-01 -0.129 0.0936 0.904 cMono_IL1B L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 7.40e-01 0.0404 0.122 0.904 cMono_IL1B L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 3.24e-01 -0.125 0.126 0.904 cMono_IL1B L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.17e-01 0.0156 0.149 0.904 cMono_S100A L2
ENSG00000079950 STX7 892985 sc-eQTL 3.12e-02 0.231 0.107 0.904 cMono_S100A L2
ENSG00000093134 VNN3 671418 sc-eQTL 7.11e-01 0.05 0.135 0.904 cMono_S100A L2
ENSG00000112299 VNN1 692128 sc-eQTL 4.39e-01 0.113 0.146 0.904 cMono_S100A L2
ENSG00000112303 VNN2 642724 sc-eQTL 1.27e-01 -0.146 0.0952 0.904 cMono_S100A L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.99e-01 0.00877 0.0689 0.904 cMono_S100A L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.86e-01 -0.0215 0.0788 0.904 cMono_S100A L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 2.43e-01 -0.149 0.127 0.904 cMono_S100A L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 5.24e-02 -0.241 0.124 0.904 cMono_S100A L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.14e-01 0.022 0.202 0.903 gdT L2
ENSG00000079950 STX7 892985 sc-eQTL 3.52e-01 0.162 0.173 0.903 gdT L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.79e-01 -0.208 0.192 0.903 gdT L2
ENSG00000112306 RPS12 591614 sc-eQTL 6.49e-01 0.0335 0.0733 0.903 gdT L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.87e-01 0.0375 0.138 0.903 gdT L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 4.29e-01 -0.15 0.189 0.903 gdT L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 6.12e-01 0.0768 0.151 0.9 intMono L2
ENSG00000079950 STX7 892985 sc-eQTL 4.04e-01 0.121 0.144 0.9 intMono L2
ENSG00000093134 VNN3 671418 sc-eQTL 9.87e-01 -0.00234 0.146 0.9 intMono L2
ENSG00000112299 VNN1 692128 sc-eQTL 5.58e-01 0.0845 0.144 0.9 intMono L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.10e-01 -0.184 0.146 0.9 intMono L2
ENSG00000112306 RPS12 591614 sc-eQTL 8.55e-02 -0.109 0.0633 0.9 intMono L2
ENSG00000118515 SGK1 -911929 sc-eQTL 7.14e-01 -0.0393 0.107 0.9 intMono L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 9.31e-03 -0.401 0.153 0.9 intMono L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 1.08e-01 -0.238 0.148 0.9 intMono L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 4.24e-01 -0.128 0.16 0.903 ncMono L2
ENSG00000079950 STX7 892985 sc-eQTL 6.60e-01 -0.0477 0.108 0.903 ncMono L2
ENSG00000093134 VNN3 671418 sc-eQTL 3.13e-03 -0.448 0.15 0.903 ncMono L2
ENSG00000112299 VNN1 692128 sc-eQTL 9.64e-01 -0.00683 0.152 0.903 ncMono L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.92e-02 -0.317 0.144 0.903 ncMono L2
ENSG00000112306 RPS12 591614 sc-eQTL 2.86e-01 0.0781 0.073 0.903 ncMono L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.67e-01 -0.0593 0.104 0.903 ncMono L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 3.51e-01 0.121 0.129 0.903 ncMono L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 4.36e-01 0.107 0.137 0.903 ncMono L2
ENSG00000028839 TBPL1 -545987 sc-eQTL 6.13e-01 0.0941 0.186 0.898 pDC L2
ENSG00000079950 STX7 892985 sc-eQTL 3.24e-01 -0.122 0.123 0.898 pDC L2
ENSG00000093134 VNN3 671418 sc-eQTL 1.98e-01 -0.16 0.124 0.898 pDC L2
ENSG00000112299 VNN1 692128 sc-eQTL 2.30e-01 -0.152 0.126 0.898 pDC L2
ENSG00000112303 VNN2 642724 sc-eQTL 2.54e-01 0.172 0.15 0.898 pDC L2
ENSG00000112306 RPS12 591614 sc-eQTL 1.60e-02 -0.249 0.102 0.898 pDC L2
ENSG00000118515 SGK1 -911929 sc-eQTL 5.72e-01 -0.0598 0.106 0.898 pDC L2
ENSG00000146409 SLC18B1 592844 sc-eQTL 4.23e-01 -0.124 0.154 0.898 pDC L2
ENSG00000286438 AL591115.1 303055 sc-eQTL 8.86e-01 -0.0212 0.147 0.898 pDC L2
ENSG00000286887 AL355881.1 -890118 sc-eQTL 7.32e-01 0.0448 0.131 0.898 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000028839 TBPL1 -545987 sc-eQTL 2.46e-01 0.185 0.159 0.904 B_Memory LOneK1K
ENSG00000079950 STX7 892985 sc-eQTL 9.42e-03 0.226 0.0863 0.904 B_Memory LOneK1K
ENSG00000112303 VNN2 642724 sc-eQTL 5.32e-01 -0.0868 0.139 0.904 B_Memory LOneK1K
ENSG00000112306 RPS12 591614 sc-eQTL 2.08e-01 0.0994 0.0787 0.904 B_Memory LOneK1K
ENSG00000118515 SGK1 -911929 sc-eQTL 2.65e-01 -0.138 0.123 0.904 B_Memory LOneK1K
ENSG00000146409 SLC18B1 592844 sc-eQTL 8.33e-01 0.0306 0.145 0.904 B_Memory LOneK1K
ENSG00000028839 TBPL1 -545987 sc-eQTL 3.40e-04 -0.534 0.147 0.904 B_Naive LOneK1K
ENSG00000079950 STX7 892985 sc-eQTL 5.84e-02 0.129 0.0676 0.904 B_Naive LOneK1K
ENSG00000112303 VNN2 642724 sc-eQTL 3.15e-01 -0.133 0.132 0.904 B_Naive LOneK1K
ENSG00000112306 RPS12 591614 sc-eQTL 1.24e-01 0.123 0.0796 0.904 B_Naive LOneK1K
ENSG00000118515 SGK1 -911929 sc-eQTL 9.29e-01 0.011 0.124 0.904 B_Naive LOneK1K
ENSG00000146409 SLC18B1 592844 sc-eQTL 5.72e-01 -0.0853 0.151 0.904 B_Naive LOneK1K
ENSG00000028839 TBPL1 -545987 sc-eQTL 7.66e-01 0.0356 0.119 0.904 CD14_Mono LOneK1K
ENSG00000079950 STX7 892985 sc-eQTL 1.47e-01 0.12 0.0827 0.904 CD14_Mono LOneK1K
ENSG00000093134 VNN3 671418 sc-eQTL 9.63e-01 0.00623 0.135 0.904 CD14_Mono LOneK1K
ENSG00000112299 VNN1 692128 sc-eQTL 7.85e-01 0.0386 0.141 0.904 CD14_Mono LOneK1K
ENSG00000112303 VNN2 642724 sc-eQTL 1.66e-01 -0.129 0.0929 0.904 CD14_Mono LOneK1K
ENSG00000112306 RPS12 591614 sc-eQTL 5.64e-01 -0.0369 0.064 0.904 CD14_Mono LOneK1K
ENSG00000118515 SGK1 -911929 sc-eQTL 2.23e-01 -0.106 0.0869 0.904 CD14_Mono LOneK1K
ENSG00000146409 SLC18B1 592844 sc-eQTL 6.35e-01 -0.0541 0.114 0.904 CD14_Mono LOneK1K
ENSG00000286887 AL355881.1 -890118 sc-eQTL 7.33e-02 -0.213 0.119 0.904 CD14_Mono LOneK1K
ENSG00000028839 TBPL1 -545987 sc-eQTL 9.89e-01 -0.00222 0.155 0.903 CD16_Mono LOneK1K
ENSG00000079950 STX7 892985 sc-eQTL 4.95e-01 0.0697 0.102 0.903 CD16_Mono LOneK1K
ENSG00000093134 VNN3 671418 sc-eQTL 1.32e-01 -0.226 0.149 0.903 CD16_Mono LOneK1K
ENSG00000112299 VNN1 692128 sc-eQTL 9.64e-01 -0.00663 0.149 0.903 CD16_Mono LOneK1K
ENSG00000112303 VNN2 642724 sc-eQTL 1.44e-01 -0.205 0.14 0.903 CD16_Mono LOneK1K
ENSG00000112306 RPS12 591614 sc-eQTL 5.40e-01 0.0365 0.0595 0.903 CD16_Mono LOneK1K
ENSG00000118515 SGK1 -911929 sc-eQTL 5.60e-01 -0.0526 0.0901 0.903 CD16_Mono LOneK1K
ENSG00000146409 SLC18B1 592844 sc-eQTL 8.14e-02 -0.251 0.144 0.903 CD16_Mono LOneK1K
ENSG00000286887 AL355881.1 -890118 sc-eQTL 3.80e-01 -0.115 0.13 0.903 CD16_Mono LOneK1K
ENSG00000028839 TBPL1 -545987 sc-eQTL 1.88e-01 0.168 0.127 0.903 NK_CD56dim LOneK1K
ENSG00000079950 STX7 892985 sc-eQTL 6.33e-02 0.222 0.119 0.903 NK_CD56dim LOneK1K
ENSG00000112303 VNN2 642724 sc-eQTL 7.24e-01 0.0535 0.152 0.903 NK_CD56dim LOneK1K
ENSG00000112306 RPS12 591614 sc-eQTL 9.45e-01 -0.00429 0.0619 0.903 NK_CD56dim LOneK1K
ENSG00000118515 SGK1 -911929 sc-eQTL 3.64e-01 -0.116 0.128 0.903 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079950 STX7 892985 pQTL 0.0289 -0.0895 0.0409 0.0 0.0 0.0791
ENSG00000112299 VNN1 692128 pQTL 0.00492 0.178 0.0632 0.0 0.0 0.0791
ENSG00000146409 SLC18B1 592844 eQTL 0.0152 -0.0951 0.0391 0.0 0.0 0.08

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079950 STX7 892985 2.74e-07 1.3e-07 4.91e-08 1.86e-07 9.24e-08 9.9e-08 1.61e-07 5.43e-08 1.45e-07 5.42e-08 1.54e-07 9e-08 1.47e-07 6.76e-08 5.91e-08 7.36e-08 4.17e-08 1.27e-07 5.97e-08 4.23e-08 1.19e-07 1.27e-07 1.44e-07 3.03e-08 1.46e-07 1.21e-07 1.07e-07 9.61e-08 1.16e-07 1.07e-07 9.7e-08 3.1e-08 3.73e-08 8.34e-08 7.36e-08 3.62e-08 5.37e-08 8.72e-08 6.63e-08 3.86e-08 5.37e-08 1.35e-07 5.21e-08 7.56e-09 3.84e-08 1.86e-08 1.21e-07 1.88e-09 4.99e-08