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Genes within 1Mb (chr6:132767872:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079950 STX7 254674 sc-eQTL 1.61e-01 0.179 0.128 0.052 DC L1
ENSG00000093134 VNN3 33107 sc-eQTL 2.20e-01 0.195 0.158 0.052 DC L1
ENSG00000112299 VNN1 53817 sc-eQTL 5.32e-01 0.107 0.171 0.052 DC L1
ENSG00000112303 VNN2 4413 sc-eQTL 4.12e-01 0.151 0.183 0.052 DC L1
ENSG00000112306 RPS12 -46697 sc-eQTL 8.20e-01 -0.0235 0.103 0.052 DC L1
ENSG00000146409 SLC18B1 -45467 sc-eQTL 4.05e-01 0.136 0.163 0.052 DC L1
ENSG00000286438 AL591115.1 -335256 sc-eQTL 9.09e-01 0.017 0.148 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079931 MOXD1 366397 sc-eQTL 1.54e-02 0.484 0.198 0.051 B_Activated L2
ENSG00000079950 STX7 254674 sc-eQTL 6.58e-01 -0.0835 0.188 0.051 B_Activated L2
ENSG00000112303 VNN2 4413 sc-eQTL 7.45e-01 0.0652 0.2 0.051 B_Activated L2
ENSG00000112306 RPS12 -46697 sc-eQTL 8.24e-02 0.186 0.106 0.051 B_Activated L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 9.25e-01 -0.0178 0.188 0.051 B_Activated L2
ENSG00000228495 LINC01013 635984 sc-eQTL 4.68e-01 0.13 0.179 0.051 B_Activated L2
ENSG00000079950 STX7 254674 sc-eQTL 3.43e-01 -0.179 0.189 0.052 CD4_CTL L2
ENSG00000112303 VNN2 4413 sc-eQTL 5.29e-01 0.12 0.191 0.052 CD4_CTL L2
ENSG00000112306 RPS12 -46697 sc-eQTL 4.22e-01 -0.0708 0.088 0.052 CD4_CTL L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 1.05e-01 -0.288 0.177 0.052 CD4_CTL L2
ENSG00000079950 STX7 254674 sc-eQTL 3.66e-01 -0.173 0.191 0.051 CD8_TCM L2
ENSG00000112303 VNN2 4413 sc-eQTL 8.78e-01 0.0293 0.19 0.051 CD8_TCM L2
ENSG00000112306 RPS12 -46697 sc-eQTL 8.42e-01 -0.0185 0.0927 0.051 CD8_TCM L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 7.59e-01 0.0623 0.203 0.051 CD8_TCM L2
ENSG00000079950 STX7 254674 sc-eQTL 8.02e-01 -0.0511 0.203 0.05 CD8_TEM L2
ENSG00000112303 VNN2 4413 sc-eQTL 2.69e-02 -0.444 0.199 0.05 CD8_TEM L2
ENSG00000112306 RPS12 -46697 sc-eQTL 5.79e-01 -0.0603 0.108 0.05 CD8_TEM L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 4.77e-01 0.146 0.205 0.05 CD8_TEM L2
ENSG00000079950 STX7 254674 sc-eQTL 3.75e-01 0.168 0.189 0.051 NK_CD56bright L2
ENSG00000112303 VNN2 4413 sc-eQTL 4.35e-01 0.15 0.192 0.051 NK_CD56bright L2
ENSG00000112306 RPS12 -46697 sc-eQTL 6.82e-01 0.044 0.107 0.051 NK_CD56bright L2
ENSG00000079950 STX7 254674 sc-eQTL 3.58e-01 0.174 0.189 0.053 NK_HLA L2
ENSG00000112303 VNN2 4413 sc-eQTL 1.13e-01 -0.304 0.191 0.053 NK_HLA L2
ENSG00000112306 RPS12 -46697 sc-eQTL 6.85e-01 -0.0363 0.0893 0.053 NK_HLA L2
ENSG00000079950 STX7 254674 sc-eQTL 1.97e-01 0.234 0.181 0.05 Pro_T L2
ENSG00000112303 VNN2 4413 sc-eQTL 5.48e-01 0.117 0.195 0.05 Pro_T L2
ENSG00000112306 RPS12 -46697 sc-eQTL 5.13e-01 0.0483 0.0736 0.05 Pro_T L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 6.98e-01 -0.0741 0.191 0.05 Pro_T L2
ENSG00000079950 STX7 254674 sc-eQTL 7.38e-01 0.0715 0.213 0.055 gdT L2
ENSG00000112303 VNN2 4413 sc-eQTL 7.31e-01 0.0814 0.236 0.055 gdT L2
ENSG00000112306 RPS12 -46697 sc-eQTL 2.40e-02 0.201 0.0883 0.055 gdT L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 5.11e-02 0.451 0.229 0.055 gdT L2
ENSG00000079950 STX7 254674 sc-eQTL 7.00e-01 -0.0509 0.132 0.052 ncMono L2
ENSG00000093134 VNN3 33107 sc-eQTL 9.51e-01 -0.0115 0.186 0.052 ncMono L2
ENSG00000112299 VNN1 53817 sc-eQTL 8.58e-02 -0.316 0.183 0.052 ncMono L2
ENSG00000112303 VNN2 4413 sc-eQTL 5.12e-01 0.116 0.177 0.052 ncMono L2
ENSG00000112306 RPS12 -46697 sc-eQTL 1.48e-02 -0.216 0.0877 0.052 ncMono L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 5.95e-01 -0.0836 0.157 0.052 ncMono L2
ENSG00000079950 STX7 254674 sc-eQTL 6.39e-01 0.0737 0.157 0.051 pDC L2
ENSG00000093134 VNN3 33107 sc-eQTL 4.31e-01 -0.125 0.158 0.051 pDC L2
ENSG00000112299 VNN1 53817 sc-eQTL 6.76e-01 -0.0673 0.161 0.051 pDC L2
ENSG00000112303 VNN2 4413 sc-eQTL 4.73e-01 -0.138 0.191 0.051 pDC L2
ENSG00000112306 RPS12 -46697 sc-eQTL 7.26e-01 -0.0462 0.132 0.051 pDC L2
ENSG00000146409 SLC18B1 -45467 sc-eQTL 6.28e-01 0.0949 0.195 0.051 pDC L2
ENSG00000286438 AL591115.1 -335256 sc-eQTL 9.82e-01 -0.00423 0.187 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093134 VNN3 33107 eQTL 0.000525 0.123 0.0355 0.0 0.0 0.0412
ENSG00000112299 VNN1 53817 eQTL 0.0019 -0.165 0.0529 0.0 0.0 0.0412

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093134 VNN3 33107 5.17e-05 4.52e-05 9.59e-06 2.22e-05 9.87e-06 2.3e-05 6.71e-05 9.1e-06 5.63e-05 3.03e-05 7.27e-05 3.01e-05 8e-05 2.39e-05 1.25e-05 3.62e-05 3.11e-05 4.44e-05 1.3e-05 1.25e-05 2.79e-05 5.79e-05 4.91e-05 1.45e-05 7.14e-05 1.68e-05 2.48e-05 2.43e-05 4.93e-05 3.7e-05 3.76e-05 3.93e-06 6.32e-06 1.1e-05 1.87e-05 9.43e-06 5.86e-06 6.18e-06 8.98e-06 5.12e-06 2.57e-06 4.97e-05 5.36e-06 6.81e-07 5.18e-06 7.52e-06 7.86e-06 4.21e-06 3.26e-06
ENSG00000112306 \N -46697 4.47e-05 3.92e-05 7.54e-06 1.97e-05 8.24e-06 1.92e-05 5.68e-05 7.26e-06 4.76e-05 2.35e-05 5.89e-05 2.53e-05 6.83e-05 1.9e-05 9.51e-06 2.85e-05 2.56e-05 3.59e-05 1.07e-05 9.6e-06 2.42e-05 4.73e-05 3.95e-05 1.2e-05 5.96e-05 1.29e-05 2.09e-05 1.96e-05 4.08e-05 3.09e-05 3.05e-05 2.79e-06 5.28e-06 8.84e-06 1.59e-05 8.02e-06 4.75e-06 4.86e-06 7.16e-06 4.34e-06 2.04e-06 4.48e-05 4.99e-06 5.25e-07 3.43e-06 5.73e-06 5.95e-06 2.8e-06 2.05e-06