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Genes within 1Mb (chr6:132743920:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079950 STX7 230722 sc-eQTL 6.74e-01 0.0575 0.137 0.052 DC L1
ENSG00000093134 VNN3 9155 sc-eQTL 2.75e-01 -0.185 0.169 0.052 DC L1
ENSG00000112299 VNN1 29865 sc-eQTL 1.63e-01 -0.255 0.182 0.052 DC L1
ENSG00000112303 VNN2 -19539 sc-eQTL 2.39e-02 -0.44 0.193 0.052 DC L1
ENSG00000112306 RPS12 -70649 sc-eQTL 7.57e-01 -0.034 0.11 0.052 DC L1
ENSG00000146409 SLC18B1 -69419 sc-eQTL 3.17e-01 -0.174 0.173 0.052 DC L1
ENSG00000286438 AL591115.1 -359208 sc-eQTL 3.26e-01 0.155 0.158 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079950 STX7 230722 sc-eQTL 4.01e-01 -0.177 0.211 0.05 CD4_CTL L2
ENSG00000112303 VNN2 -19539 sc-eQTL 3.08e-01 -0.217 0.212 0.05 CD4_CTL L2
ENSG00000112306 RPS12 -70649 sc-eQTL 6.03e-01 0.0512 0.0983 0.05 CD4_CTL L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 8.03e-01 -0.0495 0.198 0.05 CD4_CTL L2
ENSG00000079950 STX7 230722 sc-eQTL 3.02e-01 -0.22 0.213 0.053 CD8_TEM L2
ENSG00000112303 VNN2 -19539 sc-eQTL 6.32e-01 -0.102 0.212 0.053 CD8_TEM L2
ENSG00000112306 RPS12 -70649 sc-eQTL 1.74e-02 -0.27 0.112 0.053 CD8_TEM L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 4.34e-01 -0.169 0.215 0.053 CD8_TEM L2
ENSG00000079950 STX7 230722 sc-eQTL 1.65e-01 0.242 0.173 0.051 cDC L2
ENSG00000093134 VNN3 9155 sc-eQTL 9.96e-02 -0.285 0.172 0.051 cDC L2
ENSG00000112299 VNN1 29865 sc-eQTL 3.86e-01 -0.176 0.203 0.051 cDC L2
ENSG00000112303 VNN2 -19539 sc-eQTL 5.35e-03 -0.547 0.194 0.051 cDC L2
ENSG00000112306 RPS12 -70649 sc-eQTL 4.84e-01 0.0686 0.0978 0.051 cDC L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 2.82e-01 -0.208 0.193 0.051 cDC L2
ENSG00000286438 AL591115.1 -359208 sc-eQTL 2.85e-01 0.166 0.155 0.051 cDC L2
ENSG00000079950 STX7 230722 sc-eQTL 5.48e-01 -0.137 0.227 0.061 gdT L2
ENSG00000112303 VNN2 -19539 sc-eQTL 8.91e-01 0.0343 0.251 0.061 gdT L2
ENSG00000112306 RPS12 -70649 sc-eQTL 7.21e-01 -0.0342 0.0955 0.061 gdT L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 5.13e-01 -0.162 0.247 0.061 gdT L2
ENSG00000079950 STX7 230722 sc-eQTL 8.17e-01 0.0448 0.193 0.051 intMono L2
ENSG00000093134 VNN3 9155 sc-eQTL 1.93e-01 0.254 0.194 0.051 intMono L2
ENSG00000112299 VNN1 29865 sc-eQTL 6.51e-01 0.0873 0.193 0.051 intMono L2
ENSG00000112303 VNN2 -19539 sc-eQTL 3.53e-01 -0.182 0.195 0.051 intMono L2
ENSG00000112306 RPS12 -70649 sc-eQTL 1.53e-01 0.122 0.0848 0.051 intMono L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 5.81e-01 -0.114 0.207 0.051 intMono L2
ENSG00000079950 STX7 230722 sc-eQTL 7.92e-01 0.0383 0.145 0.052 ncMono L2
ENSG00000093134 VNN3 9155 sc-eQTL 7.85e-01 -0.0561 0.205 0.052 ncMono L2
ENSG00000112299 VNN1 29865 sc-eQTL 4.88e-01 0.141 0.203 0.052 ncMono L2
ENSG00000112303 VNN2 -19539 sc-eQTL 1.30e-01 -0.296 0.194 0.052 ncMono L2
ENSG00000112306 RPS12 -70649 sc-eQTL 4.58e-02 0.195 0.0971 0.052 ncMono L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 1.47e-01 -0.251 0.172 0.052 ncMono L2
ENSG00000079950 STX7 230722 sc-eQTL 9.49e-01 -0.0105 0.163 0.054 pDC L2
ENSG00000093134 VNN3 9155 sc-eQTL 4.70e-01 -0.119 0.164 0.054 pDC L2
ENSG00000112299 VNN1 29865 sc-eQTL 6.45e-01 -0.0772 0.167 0.054 pDC L2
ENSG00000112303 VNN2 -19539 sc-eQTL 7.28e-02 -0.356 0.197 0.054 pDC L2
ENSG00000112306 RPS12 -70649 sc-eQTL 1.72e-01 0.187 0.136 0.054 pDC L2
ENSG00000146409 SLC18B1 -69419 sc-eQTL 4.24e-01 0.162 0.203 0.054 pDC L2
ENSG00000286438 AL591115.1 -359208 sc-eQTL 7.77e-01 0.055 0.194 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093134 VNN3 9155 eQTL 5.79e-07 -0.158 0.0313 0.0 0.0 0.0604
ENSG00000112299 VNN1 29865 pQTL 0.00307 0.232 0.0783 0.0 0.0 0.0578
ENSG00000112299 VNN1 29865 eQTL 2.18e-17 0.393 0.0454 0.0 0.0 0.0604
ENSG00000112303 VNN2 -19539 pQTL 2.26e-40 -0.728 0.0529 1.0 1.0 0.0578
ENSG00000112303 VNN2 -19539 eQTL 2.18e-20 -0.255 0.0269 0.00491 0.00251 0.0604
ENSG00000234484 AL032821.1 -8755 eQTL 1.97e-14 0.51 0.0656 0.0 0.0 0.0604

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079950 \N 230722 3.62e-06 9.45e-07 6.57e-08 4.43e-07 1.06e-07 4.57e-07 5.65e-07 8.17e-08 3.51e-07 1.65e-07 5.73e-07 3.08e-07 8.34e-07 1.58e-07 2.26e-07 3.57e-07 2.11e-07 5.2e-07 1.55e-07 8.86e-08 1.91e-07 5.34e-07 3.84e-07 1.03e-07 1.28e-06 2.36e-07 3.93e-07 2.71e-07 2.98e-07 4.51e-07 2.55e-07 4.32e-08 6.08e-08 1.36e-07 3.68e-07 3.11e-08 5.45e-08 8.89e-08 5.8e-08 2.8e-08 5.96e-08 1.13e-06 1.93e-07 2.67e-08 3.71e-08 1.81e-08 1.11e-07 1.91e-09 4.81e-08
ENSG00000093134 VNN3 9155 0.00018 1.46e-05 2.53e-06 1.06e-05 2.97e-06 2.64e-05 2.26e-05 2.14e-06 1.45e-05 7.53e-06 1.82e-05 7.03e-06 2.69e-05 4.33e-06 5.08e-06 1.18e-05 8.54e-06 3.03e-05 2.95e-06 3.39e-06 8.21e-06 2.11e-05 1.9e-05 4.21e-06 2.67e-05 5.31e-06 7.99e-06 5.34e-06 1.54e-05 1.61e-05 8.5e-06 9.86e-07 1.17e-06 3.74e-06 6.89e-06 2.65e-06 1.83e-06 2e-06 2.01e-06 2e-06 1.16e-06 2.7e-05 5.45e-06 1.69e-07 1.88e-06 1.76e-06 3.02e-06 6.58e-07 4.77e-07
ENSG00000112299 VNN1 29865 0.00016 1.02e-05 1.04e-06 6.54e-06 2.46e-06 1.54e-05 1.15e-05 1.64e-06 7.89e-06 5.12e-06 1.15e-05 4.89e-06 1.36e-05 3.86e-06 3.17e-06 7.34e-06 4.92e-06 1.49e-05 2.2e-06 2.62e-06 5.26e-06 1.16e-05 9.11e-06 2.78e-06 1.75e-05 4.31e-06 6.39e-06 3.05e-06 8.87e-06 8.81e-06 4.54e-06 5.12e-07 7.24e-07 2.86e-06 4.9e-06 1.17e-06 1.03e-06 5.24e-07 1.24e-06 1.03e-06 7.1e-07 1.6e-05 3.58e-06 1.99e-07 8.01e-07 1.08e-06 1.8e-06 4.41e-07 3.41e-07
ENSG00000112303 VNN2 -19539 0.000175 1.27e-05 1.68e-06 8.36e-06 2.32e-06 2.15e-05 1.78e-05 2.15e-06 1.05e-05 6.14e-06 1.42e-05 6.14e-06 2.01e-05 3.53e-06 4.27e-06 9.57e-06 6.9e-06 2.25e-05 2.7e-06 2.84e-06 6.76e-06 1.54e-05 1.37e-05 3.29e-06 2.27e-05 4.96e-06 7.6e-06 4.45e-06 1.25e-05 1.24e-05 6.37e-06 9.05e-07 1.1e-06 3.37e-06 5.77e-06 2.1e-06 1.44e-06 1.84e-06 1.79e-06 1.2e-06 1.04e-06 2.05e-05 4.93e-06 1.89e-07 1.05e-06 1.25e-06 2.32e-06 7.35e-07 5.44e-07
ENSG00000234484 AL032821.1 -8755 0.00018 1.48e-05 2.5e-06 1.07e-05 3.02e-06 2.64e-05 2.29e-05 2.22e-06 1.48e-05 7.65e-06 1.82e-05 7.07e-06 2.71e-05 4.45e-06 5.09e-06 1.21e-05 8.68e-06 3.05e-05 3.14e-06 3.49e-06 8.31e-06 2.15e-05 1.93e-05 4.21e-06 2.69e-05 5.34e-06 8e-06 5.22e-06 1.57e-05 1.63e-05 8.68e-06 9.95e-07 1.17e-06 3.76e-06 6.9e-06 2.63e-06 1.76e-06 1.99e-06 1.99e-06 2e-06 1.2e-06 2.73e-05 5.53e-06 1.6e-07 1.84e-06 1.75e-06 3.11e-06 7.01e-07 4.89e-07