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Genes within 1Mb (chr6:132275918:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079950 STX7 -237280 sc-eQTL 2.40e-01 -0.242 0.206 0.05 CD4_CTL L2
ENSG00000112282 MED23 647676 sc-eQTL 4.35e-01 0.168 0.214 0.05 CD4_CTL L2
ENSG00000112303 VNN2 -487541 sc-eQTL 2.48e-01 0.24 0.208 0.05 CD4_CTL L2
ENSG00000112306 RPS12 -538651 sc-eQTL 3.40e-01 -0.0918 0.096 0.05 CD4_CTL L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 3.68e-01 -0.175 0.194 0.05 CD4_CTL L2
ENSG00000079950 STX7 -237280 sc-eQTL 9.88e-01 -0.00311 0.204 0.053 CD8_TCM L2
ENSG00000112282 MED23 647676 sc-eQTL 5.60e-01 -0.119 0.204 0.053 CD8_TCM L2
ENSG00000112303 VNN2 -487541 sc-eQTL 5.96e-01 -0.107 0.202 0.053 CD8_TCM L2
ENSG00000112306 RPS12 -538651 sc-eQTL 5.22e-01 -0.0631 0.0985 0.053 CD8_TCM L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 4.10e-01 0.178 0.216 0.053 CD8_TCM L2
ENSG00000079950 STX7 -237280 sc-eQTL 2.34e-01 0.249 0.208 0.053 CD8_TEM L2
ENSG00000112282 MED23 647676 sc-eQTL 9.93e-01 0.00167 0.201 0.053 CD8_TEM L2
ENSG00000112303 VNN2 -487541 sc-eQTL 8.12e-01 0.0496 0.208 0.053 CD8_TEM L2
ENSG00000112306 RPS12 -538651 sc-eQTL 3.93e-01 -0.0956 0.112 0.053 CD8_TEM L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 1.44e-01 0.308 0.21 0.053 CD8_TEM L2
ENSG00000079950 STX7 -237280 sc-eQTL 2.58e-01 0.229 0.202 0.05 NK_HLA L2
ENSG00000112282 MED23 647676 sc-eQTL 2.33e-03 0.616 0.2 0.05 NK_HLA L2
ENSG00000112303 VNN2 -487541 sc-eQTL 9.98e-02 -0.336 0.203 0.05 NK_HLA L2
ENSG00000112306 RPS12 -538651 sc-eQTL 3.74e-02 -0.198 0.0943 0.05 NK_HLA L2
ENSG00000079931 MOXD1 -125557 sc-eQTL 7.55e-02 -0.376 0.209 0.052 PB L2
ENSG00000079950 STX7 -237280 sc-eQTL 4.24e-02 -0.357 0.174 0.052 PB L2
ENSG00000112282 MED23 647676 sc-eQTL 5.39e-01 -0.148 0.241 0.052 PB L2
ENSG00000112303 VNN2 -487541 sc-eQTL 4.94e-03 0.6 0.209 0.052 PB L2
ENSG00000112306 RPS12 -538651 sc-eQTL 5.76e-01 -0.0689 0.123 0.052 PB L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 9.20e-01 0.0232 0.231 0.052 PB L2
ENSG00000228495 LINC01013 144030 sc-eQTL 2.68e-01 0.168 0.151 0.052 PB L2
ENSG00000079950 STX7 -237280 sc-eQTL 3.58e-01 0.173 0.187 0.05 Pro_T L2
ENSG00000112282 MED23 647676 sc-eQTL 4.80e-01 -0.149 0.211 0.05 Pro_T L2
ENSG00000112303 VNN2 -487541 sc-eQTL 5.89e-01 -0.109 0.201 0.05 Pro_T L2
ENSG00000112306 RPS12 -538651 sc-eQTL 6.55e-02 0.14 0.0756 0.05 Pro_T L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 8.74e-01 -0.0314 0.197 0.05 Pro_T L2
ENSG00000079950 STX7 -237280 sc-eQTL 3.48e-01 -0.157 0.167 0.051 pDC L2
ENSG00000093134 VNN3 -458847 sc-eQTL 9.46e-01 -0.0114 0.169 0.051 pDC L2
ENSG00000112282 MED23 647676 sc-eQTL 7.10e-01 -0.0876 0.235 0.051 pDC L2
ENSG00000112299 VNN1 -438137 sc-eQTL 2.61e-01 0.193 0.171 0.051 pDC L2
ENSG00000112303 VNN2 -487541 sc-eQTL 7.78e-01 -0.0578 0.204 0.051 pDC L2
ENSG00000112306 RPS12 -538651 sc-eQTL 8.62e-01 -0.0244 0.141 0.051 pDC L2
ENSG00000146409 SLC18B1 -537421 sc-eQTL 2.63e-02 0.46 0.205 0.051 pDC L2
ENSG00000286438 AL591115.1 -827210 sc-eQTL 5.42e-01 -0.122 0.199 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000112282 MED23 647676 eQTL 0.0125 -0.0938 0.0375 0.0 0.0 0.05

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079950 \N -237280 1.97e-06 2.16e-06 2.59e-07 1.27e-06 4.39e-07 7.12e-07 1.32e-06 5.72e-07 1.69e-06 7.24e-07 1.93e-06 1.45e-06 3.04e-06 6.19e-07 4.8e-07 1.19e-06 1.1e-06 1.36e-06 5.76e-07 7.92e-07 8.63e-07 2.02e-06 1.75e-06 9.69e-07 2.65e-06 1.1e-06 1.18e-06 1.39e-06 1.68e-06 1.66e-06 8.88e-07 2.49e-07 4.76e-07 8.37e-07 9.62e-07 6.84e-07 7.26e-07 3.15e-07 7.23e-07 2.27e-07 2.89e-07 2.9e-06 4.34e-07 1.99e-07 3.62e-07 3.24e-07 5.17e-07 2.25e-07 2.13e-07
ENSG00000093134 \N -458847 1.05e-06 6.07e-07 1.31e-07 4.26e-07 1.07e-07 2.63e-07 6.33e-07 2.07e-07 6.53e-07 2.98e-07 1.03e-06 5.08e-07 9.97e-07 1.6e-07 3.31e-07 3.57e-07 4.87e-07 4.16e-07 2.6e-07 1.78e-07 2.42e-07 5.11e-07 4.4e-07 2.22e-07 1.22e-06 2.56e-07 4.25e-07 3.95e-07 4.9e-07 6.73e-07 3.77e-07 5.4e-08 5.75e-08 1.77e-07 3.61e-07 1.82e-07 8.43e-08 1.11e-07 7.99e-08 2.74e-08 1.47e-07 7.52e-07 4.71e-08 5.68e-09 1.96e-07 1.5e-08 1.28e-07 7.19e-08 6.17e-08
ENSG00000112306 \N -538651 7.74e-07 3.35e-07 1.03e-07 3.19e-07 1.07e-07 1.64e-07 5.13e-07 1.21e-07 3.66e-07 2.12e-07 5.58e-07 3.36e-07 6.47e-07 1.01e-07 1.9e-07 2.08e-07 2.07e-07 3.39e-07 1.5e-07 1.24e-07 1.91e-07 3.15e-07 3.11e-07 1.17e-07 6.65e-07 2.33e-07 2.57e-07 2.57e-07 2.84e-07 3.71e-07 2.55e-07 7.33e-08 5.6e-08 1.19e-07 2.82e-07 7.57e-08 8.07e-08 6.67e-08 4.17e-08 7.39e-08 8.61e-08 4.16e-07 2.16e-08 1.85e-08 1.15e-07 1.78e-08 8.24e-08 1.77e-08 5.35e-08