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Genes within 1Mb (chr6:131301340:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 238018 sc-eQTL 3.55e-01 -0.0586 0.0631 0.295 B L1
ENSG00000112282 MED23 -326902 sc-eQTL 3.05e-01 0.0711 0.0692 0.295 B L1
ENSG00000118507 AKAP7 165873 sc-eQTL 3.93e-01 0.0702 0.082 0.295 B L1
ENSG00000164483 SAMD3 935915 sc-eQTL 8.07e-01 0.0177 0.0723 0.295 B L1
ENSG00000228495 LINC01013 -830548 sc-eQTL 6.32e-01 -0.0262 0.0546 0.295 B L1
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.94e-02 0.138 0.0832 0.295 CD4T L1
ENSG00000112282 MED23 -326902 sc-eQTL 8.09e-01 -0.0131 0.0542 0.295 CD4T L1
ENSG00000118507 AKAP7 165873 sc-eQTL 3.44e-03 -0.211 0.0713 0.295 CD4T L1
ENSG00000164483 SAMD3 935915 sc-eQTL 4.52e-01 0.0479 0.0636 0.295 CD4T L1
ENSG00000112282 MED23 -326902 sc-eQTL 6.73e-01 -0.028 0.0661 0.295 CD8T L1
ENSG00000118507 AKAP7 165873 sc-eQTL 9.88e-02 -0.124 0.0748 0.295 CD8T L1
ENSG00000164483 SAMD3 935915 sc-eQTL 9.91e-02 -0.0569 0.0344 0.295 CD8T L1
ENSG00000079819 EPB41L2 238018 sc-eQTL 5.73e-01 -0.0395 0.07 0.291 DC L1
ENSG00000112282 MED23 -326902 sc-eQTL 8.54e-01 -0.0166 0.09 0.291 DC L1
ENSG00000118507 AKAP7 165873 sc-eQTL 3.68e-01 0.0798 0.0883 0.291 DC L1
ENSG00000079819 EPB41L2 238018 sc-eQTL 8.69e-01 -0.0127 0.0772 0.295 Mono L1
ENSG00000112282 MED23 -326902 sc-eQTL 4.57e-01 -0.0558 0.0749 0.295 Mono L1
ENSG00000118507 AKAP7 165873 sc-eQTL 9.28e-02 0.125 0.074 0.295 Mono L1
ENSG00000112282 MED23 -326902 sc-eQTL 5.63e-01 -0.0368 0.0636 0.296 NK L1
ENSG00000118507 AKAP7 165873 sc-eQTL 1.27e-01 0.116 0.0758 0.296 NK L1
ENSG00000164483 SAMD3 935915 sc-eQTL 4.00e-01 -0.0358 0.0424 0.296 NK L1
ENSG00000079819 EPB41L2 238018 sc-eQTL 7.33e-01 -0.0269 0.0787 0.295 Other_T L1
ENSG00000112282 MED23 -326902 sc-eQTL 4.48e-01 0.0675 0.0888 0.295 Other_T L1
ENSG00000118507 AKAP7 165873 sc-eQTL 3.49e-01 -0.0728 0.0776 0.295 Other_T L1
ENSG00000164483 SAMD3 935915 sc-eQTL 7.35e-01 -0.0141 0.0415 0.295 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 238018 sc-eQTL 1.79e-01 -0.113 0.0837 0.304 B_Activated L2
ENSG00000112282 MED23 -326902 sc-eQTL 1.18e-01 -0.155 0.0985 0.304 B_Activated L2
ENSG00000118507 AKAP7 165873 sc-eQTL 3.41e-01 -0.0942 0.0986 0.304 B_Activated L2
ENSG00000164483 SAMD3 935915 sc-eQTL 1.77e-01 0.0911 0.0671 0.304 B_Activated L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 3.62e-01 -0.0778 0.0851 0.304 B_Activated L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 3.91e-01 0.0775 0.0901 0.294 B_Intermediate L2
ENSG00000112282 MED23 -326902 sc-eQTL 4.44e-01 -0.0665 0.0868 0.294 B_Intermediate L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.82e-01 -0.0363 0.0883 0.294 B_Intermediate L2
ENSG00000164483 SAMD3 935915 sc-eQTL 3.44e-01 0.0704 0.0742 0.294 B_Intermediate L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 9.23e-02 -0.135 0.0801 0.294 B_Intermediate L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.36e-02 -0.139 0.0825 0.291 B_Memory L2
ENSG00000112282 MED23 -326902 sc-eQTL 2.87e-01 -0.0926 0.0868 0.291 B_Memory L2
ENSG00000118507 AKAP7 165873 sc-eQTL 1.16e-01 0.142 0.0901 0.291 B_Memory L2
ENSG00000164483 SAMD3 935915 sc-eQTL 7.21e-01 0.0295 0.0826 0.291 B_Memory L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 2.70e-01 0.0914 0.0825 0.291 B_Memory L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.72e-01 -0.03 0.0708 0.295 B_Naive1 L2
ENSG00000112282 MED23 -326902 sc-eQTL 8.32e-01 0.016 0.0754 0.295 B_Naive1 L2
ENSG00000118507 AKAP7 165873 sc-eQTL 1.89e-01 0.124 0.094 0.295 B_Naive1 L2
ENSG00000164483 SAMD3 935915 sc-eQTL 6.30e-01 -0.0356 0.0737 0.295 B_Naive1 L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 5.80e-01 -0.0329 0.0594 0.295 B_Naive1 L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.79e-01 0.0332 0.0802 0.294 B_Naive2 L2
ENSG00000112282 MED23 -326902 sc-eQTL 3.17e-02 0.196 0.0905 0.294 B_Naive2 L2
ENSG00000118507 AKAP7 165873 sc-eQTL 7.69e-01 0.0283 0.0961 0.294 B_Naive2 L2
ENSG00000164483 SAMD3 935915 sc-eQTL 6.40e-02 -0.115 0.0619 0.294 B_Naive2 L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 9.80e-01 0.0016 0.0637 0.294 B_Naive2 L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 1.73e-01 -0.106 0.0774 0.293 CD4_CTL L2
ENSG00000112282 MED23 -326902 sc-eQTL 5.37e-01 -0.0616 0.0995 0.293 CD4_CTL L2
ENSG00000118507 AKAP7 165873 sc-eQTL 9.81e-01 -0.00224 0.0955 0.293 CD4_CTL L2
ENSG00000164483 SAMD3 935915 sc-eQTL 9.47e-01 0.0042 0.0628 0.293 CD4_CTL L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.37e-01 -0.00683 0.0868 0.295 CD4_Naive L2
ENSG00000112282 MED23 -326902 sc-eQTL 6.73e-01 -0.0265 0.0629 0.295 CD4_Naive L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.81e-03 -0.221 0.0808 0.295 CD4_Naive L2
ENSG00000164483 SAMD3 935915 sc-eQTL 7.60e-01 0.0232 0.0757 0.295 CD4_Naive L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 1.44e-01 0.129 0.0877 0.295 CD4_TCM L2
ENSG00000112282 MED23 -326902 sc-eQTL 5.54e-01 0.0401 0.0677 0.295 CD4_TCM L2
ENSG00000118507 AKAP7 165873 sc-eQTL 3.60e-02 -0.164 0.0778 0.295 CD4_TCM L2
ENSG00000164483 SAMD3 935915 sc-eQTL 5.31e-01 0.0449 0.0716 0.295 CD4_TCM L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 3.90e-02 0.191 0.0921 0.295 CD4_TEM L2
ENSG00000112282 MED23 -326902 sc-eQTL 8.45e-02 0.148 0.0851 0.295 CD4_TEM L2
ENSG00000118507 AKAP7 165873 sc-eQTL 2.87e-01 0.1 0.0939 0.295 CD4_TEM L2
ENSG00000164483 SAMD3 935915 sc-eQTL 5.41e-01 0.0367 0.0599 0.295 CD4_TEM L2
ENSG00000112282 MED23 -326902 sc-eQTL 1.83e-01 -0.108 0.0804 0.295 CD8_CTL L2
ENSG00000118507 AKAP7 165873 sc-eQTL 2.95e-01 -0.0947 0.0901 0.295 CD8_CTL L2
ENSG00000164483 SAMD3 935915 sc-eQTL 6.86e-01 -0.0232 0.0574 0.295 CD8_CTL L2
ENSG00000112282 MED23 -326902 sc-eQTL 9.94e-01 0.00056 0.0757 0.295 CD8_Naive L2
ENSG00000118507 AKAP7 165873 sc-eQTL 5.95e-02 -0.161 0.0848 0.295 CD8_Naive L2
ENSG00000164483 SAMD3 935915 sc-eQTL 2.05e-02 -0.175 0.0749 0.295 CD8_Naive L2
ENSG00000112282 MED23 -326902 sc-eQTL 8.65e-01 0.0159 0.0933 0.285 CD8_TCM L2
ENSG00000118507 AKAP7 165873 sc-eQTL 1.43e-01 -0.147 0.0996 0.285 CD8_TCM L2
ENSG00000164483 SAMD3 935915 sc-eQTL 7.60e-01 0.0262 0.0854 0.285 CD8_TCM L2
ENSG00000112282 MED23 -326902 sc-eQTL 8.54e-01 -0.018 0.0974 0.29 CD8_TEM L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.00e-01 -0.052 0.0989 0.29 CD8_TEM L2
ENSG00000164483 SAMD3 935915 sc-eQTL 7.43e-02 -0.126 0.0701 0.29 CD8_TEM L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 3.35e-01 -0.0828 0.0856 0.297 MAIT L2
ENSG00000112282 MED23 -326902 sc-eQTL 1.13e-01 0.148 0.0929 0.297 MAIT L2
ENSG00000118507 AKAP7 165873 sc-eQTL 4.53e-01 -0.0693 0.0922 0.297 MAIT L2
ENSG00000164483 SAMD3 935915 sc-eQTL 9.08e-01 -0.00638 0.0551 0.297 MAIT L2
ENSG00000112282 MED23 -326902 sc-eQTL 5.86e-01 -0.0526 0.0965 0.296 NK_CD56bright L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.41e-01 0.0438 0.0936 0.296 NK_CD56bright L2
ENSG00000164483 SAMD3 935915 sc-eQTL 4.54e-01 0.0556 0.074 0.296 NK_CD56bright L2
ENSG00000112282 MED23 -326902 sc-eQTL 4.98e-01 -0.0518 0.0763 0.295 NK_CD56dim L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.77e-02 0.148 0.0804 0.295 NK_CD56dim L2
ENSG00000164483 SAMD3 935915 sc-eQTL 2.65e-01 -0.0493 0.0441 0.295 NK_CD56dim L2
ENSG00000112282 MED23 -326902 sc-eQTL 9.70e-01 -0.00348 0.093 0.285 NK_HLA L2
ENSG00000118507 AKAP7 165873 sc-eQTL 9.13e-01 -0.0105 0.0964 0.285 NK_HLA L2
ENSG00000164483 SAMD3 935915 sc-eQTL 3.50e-01 -0.0741 0.0792 0.285 NK_HLA L2
ENSG00000112282 MED23 -326902 sc-eQTL 1.48e-01 0.121 0.0833 0.295 NK_cytokine L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.49e-01 0.0385 0.0845 0.295 NK_cytokine L2
ENSG00000164483 SAMD3 935915 sc-eQTL 3.52e-01 -0.0492 0.0527 0.295 NK_cytokine L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.44e-01 0.00816 0.115 0.337 PB L2
ENSG00000112282 MED23 -326902 sc-eQTL 4.35e-01 -0.0849 0.108 0.337 PB L2
ENSG00000118507 AKAP7 165873 sc-eQTL 2.71e-01 -0.116 0.105 0.337 PB L2
ENSG00000164483 SAMD3 935915 sc-eQTL 5.41e-01 -0.0613 0.1 0.337 PB L2
ENSG00000228495 LINC01013 -830548 sc-eQTL 4.46e-01 0.0521 0.0681 0.337 PB L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.44e-01 0.00575 0.082 0.296 Pro_T L2
ENSG00000112282 MED23 -326902 sc-eQTL 7.52e-01 0.0302 0.0953 0.296 Pro_T L2
ENSG00000118507 AKAP7 165873 sc-eQTL 2.58e-01 0.0924 0.0815 0.296 Pro_T L2
ENSG00000164483 SAMD3 935915 sc-eQTL 8.09e-01 -0.0128 0.0528 0.296 Pro_T L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.07e-01 0.0463 0.0899 0.295 Treg L2
ENSG00000112282 MED23 -326902 sc-eQTL 4.60e-01 -0.0684 0.0924 0.295 Treg L2
ENSG00000118507 AKAP7 165873 sc-eQTL 7.26e-01 -0.028 0.0798 0.295 Treg L2
ENSG00000164483 SAMD3 935915 sc-eQTL 5.51e-01 0.0458 0.0767 0.295 Treg L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.81e-01 -0.0328 0.0798 0.285 cDC L2
ENSG00000112282 MED23 -326902 sc-eQTL 8.32e-02 0.177 0.102 0.285 cDC L2
ENSG00000118507 AKAP7 165873 sc-eQTL 7.15e-01 0.0363 0.0995 0.285 cDC L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 5.95e-01 -0.0445 0.0836 0.295 cMono_IL1B L2
ENSG00000112282 MED23 -326902 sc-eQTL 5.05e-01 0.0548 0.0821 0.295 cMono_IL1B L2
ENSG00000118507 AKAP7 165873 sc-eQTL 6.13e-02 0.149 0.0794 0.295 cMono_IL1B L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 7.18e-01 0.0315 0.0871 0.295 cMono_S100A L2
ENSG00000112282 MED23 -326902 sc-eQTL 5.35e-02 -0.167 0.0858 0.295 cMono_S100A L2
ENSG00000118507 AKAP7 165873 sc-eQTL 3.82e-01 0.0741 0.0845 0.295 cMono_S100A L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.71e-01 -0.0428 0.101 0.27 gdT L2
ENSG00000112282 MED23 -326902 sc-eQTL 3.26e-01 -0.111 0.113 0.27 gdT L2
ENSG00000118507 AKAP7 165873 sc-eQTL 1.90e-01 -0.155 0.117 0.27 gdT L2
ENSG00000164483 SAMD3 935915 sc-eQTL 9.31e-01 -0.00778 0.0899 0.27 gdT L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 6.10e-01 0.0451 0.0884 0.296 intMono L2
ENSG00000112282 MED23 -326902 sc-eQTL 3.97e-01 0.0807 0.0951 0.296 intMono L2
ENSG00000118507 AKAP7 165873 sc-eQTL 3.71e-01 0.0832 0.0928 0.296 intMono L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 4.51e-01 -0.0644 0.0853 0.294 ncMono L2
ENSG00000112282 MED23 -326902 sc-eQTL 2.24e-01 -0.113 0.0927 0.294 ncMono L2
ENSG00000118507 AKAP7 165873 sc-eQTL 4.49e-01 0.0684 0.0901 0.294 ncMono L2
ENSG00000079819 EPB41L2 238018 sc-eQTL 3.99e-01 -0.0889 0.105 0.291 pDC L2
ENSG00000112282 MED23 -326902 sc-eQTL 1.81e-01 -0.142 0.106 0.291 pDC L2
ENSG00000118507 AKAP7 165873 sc-eQTL 4.39e-01 0.0673 0.0868 0.291 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.74e-01 -0.00258 0.0803 0.295 B_Memory LOneK1K
ENSG00000112282 MED23 -326902 sc-eQTL 2.79e-01 -0.0853 0.0787 0.295 B_Memory LOneK1K
ENSG00000118507 AKAP7 165873 sc-eQTL 8.16e-01 -0.0187 0.0802 0.295 B_Memory LOneK1K
ENSG00000164483 SAMD3 935915 sc-eQTL 3.72e-01 0.0713 0.0798 0.295 B_Memory LOneK1K
ENSG00000228495 LINC01013 -830548 sc-eQTL 7.09e-01 -0.0307 0.0822 0.295 B_Memory LOneK1K
ENSG00000079819 EPB41L2 238018 sc-eQTL 9.49e-01 -0.00431 0.067 0.295 B_Naive LOneK1K
ENSG00000112282 MED23 -326902 sc-eQTL 9.59e-02 0.123 0.0737 0.295 B_Naive LOneK1K
ENSG00000118507 AKAP7 165873 sc-eQTL 1.50e-01 0.134 0.093 0.295 B_Naive LOneK1K
ENSG00000164483 SAMD3 935915 sc-eQTL 3.49e-01 -0.0752 0.08 0.295 B_Naive LOneK1K
ENSG00000228495 LINC01013 -830548 sc-eQTL 4.58e-01 -0.0413 0.0555 0.295 B_Naive LOneK1K
ENSG00000079819 EPB41L2 238018 sc-eQTL 8.87e-01 -0.0115 0.0805 0.295 CD14_Mono LOneK1K
ENSG00000112282 MED23 -326902 sc-eQTL 5.69e-01 -0.0442 0.0775 0.295 CD14_Mono LOneK1K
ENSG00000118507 AKAP7 165873 sc-eQTL 1.25e-01 0.117 0.0757 0.295 CD14_Mono LOneK1K
ENSG00000079819 EPB41L2 238018 sc-eQTL 7.82e-01 0.0238 0.086 0.295 CD16_Mono LOneK1K
ENSG00000112282 MED23 -326902 sc-eQTL 5.28e-01 0.0553 0.0874 0.295 CD16_Mono LOneK1K
ENSG00000118507 AKAP7 165873 sc-eQTL 3.46e-01 0.0846 0.0896 0.295 CD16_Mono LOneK1K
ENSG00000112282 MED23 -326902 sc-eQTL 9.95e-01 -0.000409 0.068 0.295 NK_CD56dim LOneK1K
ENSG00000118507 AKAP7 165873 sc-eQTL 4.51e-02 0.15 0.0743 0.295 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 935915 sc-eQTL 2.34e-01 -0.0486 0.0407 0.295 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079819 EPB41L2 238018 eQTL 0.00068 0.0774 0.0227 0.0 0.0 0.301
ENSG00000118507 AKAP7 165873 eQTL 0.00178 0.0697 0.0223 0.0 0.0 0.301

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina