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Genes within 1Mb (chr6:131237586:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 174264 sc-eQTL 5.17e-01 -0.0942 0.145 0.052 DC L1
ENSG00000112282 MED23 -390656 sc-eQTL 1.04e-01 -0.304 0.186 0.052 DC L1
ENSG00000118507 AKAP7 102119 sc-eQTL 1.17e-01 -0.288 0.183 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 174264 sc-eQTL 1.49e-01 -0.25 0.173 0.051 B_Activated L2
ENSG00000112282 MED23 -390656 sc-eQTL 4.25e-01 0.164 0.204 0.051 B_Activated L2
ENSG00000118507 AKAP7 102119 sc-eQTL 4.00e-02 0.417 0.202 0.051 B_Activated L2
ENSG00000164483 SAMD3 872161 sc-eQTL 8.42e-01 -0.0278 0.139 0.051 B_Activated L2
ENSG00000228495 LINC01013 -894302 sc-eQTL 9.39e-02 0.294 0.175 0.051 B_Activated L2
ENSG00000079819 EPB41L2 174264 sc-eQTL 8.54e-01 0.0285 0.155 0.052 CD4_CTL L2
ENSG00000112282 MED23 -390656 sc-eQTL 3.33e-01 0.192 0.198 0.052 CD4_CTL L2
ENSG00000118507 AKAP7 102119 sc-eQTL 8.03e-01 0.0475 0.19 0.052 CD4_CTL L2
ENSG00000164483 SAMD3 872161 sc-eQTL 2.12e-01 0.156 0.125 0.052 CD4_CTL L2
ENSG00000112282 MED23 -390656 sc-eQTL 2.11e-01 -0.245 0.195 0.051 CD8_TCM L2
ENSG00000118507 AKAP7 102119 sc-eQTL 1.32e-01 -0.316 0.209 0.051 CD8_TCM L2
ENSG00000164483 SAMD3 872161 sc-eQTL 6.73e-01 -0.0758 0.179 0.051 CD8_TCM L2
ENSG00000112282 MED23 -390656 sc-eQTL 2.17e-01 0.245 0.198 0.05 CD8_TEM L2
ENSG00000118507 AKAP7 102119 sc-eQTL 2.94e-01 0.212 0.201 0.05 CD8_TEM L2
ENSG00000164483 SAMD3 872161 sc-eQTL 5.65e-01 0.0831 0.144 0.05 CD8_TEM L2
ENSG00000112282 MED23 -390656 sc-eQTL 3.23e-01 0.196 0.198 0.053 NK_HLA L2
ENSG00000118507 AKAP7 102119 sc-eQTL 8.49e-02 0.354 0.205 0.053 NK_HLA L2
ENSG00000164483 SAMD3 872161 sc-eQTL 8.84e-02 0.288 0.168 0.053 NK_HLA L2
ENSG00000079819 EPB41L2 174264 sc-eQTL 9.75e-01 -0.00794 0.257 0.052 PB L2
ENSG00000112282 MED23 -390656 sc-eQTL 1.01e-01 -0.396 0.239 0.052 PB L2
ENSG00000118507 AKAP7 102119 sc-eQTL 8.45e-01 -0.0463 0.236 0.052 PB L2
ENSG00000164483 SAMD3 872161 sc-eQTL 2.77e-01 -0.243 0.223 0.052 PB L2
ENSG00000228495 LINC01013 -894302 sc-eQTL 3.22e-01 -0.151 0.152 0.052 PB L2
ENSG00000079819 EPB41L2 174264 sc-eQTL 3.05e-01 -0.2 0.194 0.058 gdT L2
ENSG00000112282 MED23 -390656 sc-eQTL 7.61e-01 -0.0668 0.219 0.058 gdT L2
ENSG00000118507 AKAP7 102119 sc-eQTL 6.74e-02 0.416 0.226 0.058 gdT L2
ENSG00000164483 SAMD3 872161 sc-eQTL 5.60e-01 -0.101 0.173 0.058 gdT L2
ENSG00000079819 EPB41L2 174264 sc-eQTL 9.89e-01 0.00269 0.201 0.059 pDC L2
ENSG00000112282 MED23 -390656 sc-eQTL 8.86e-02 -0.344 0.201 0.059 pDC L2
ENSG00000118507 AKAP7 102119 sc-eQTL 9.01e-01 -0.0207 0.166 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079819 EPB41L2 174264 eQTL 2.18e-05 -0.22 0.0515 0.0 0.0 0.0451
ENSG00000112282 MED23 -390656 eQTL 0.0004 -0.144 0.0406 0.0 0.0 0.0451
ENSG00000118507 AKAP7 102119 eQTL 0.0133 -0.126 0.0507 0.0 0.0 0.0451
ENSG00000118520 ARG1 -335558 pQTL 0.0476 -0.0682 0.0344 0.0 0.0 0.0452
ENSG00000118520 ARG1 -335558 eQTL 0.003 -0.134 0.045 0.0 0.0 0.0451

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079819 EPB41L2 174264 2.21e-06 2.43e-06 3.08e-07 1.62e-06 4.9e-07 7.29e-07 1.31e-06 4.23e-07 1.77e-06 6.77e-07 1.99e-06 1.45e-06 3.49e-06 8.66e-07 3.34e-07 1.23e-06 1.15e-06 1.59e-06 5.91e-07 7.6e-07 6.18e-07 1.94e-06 1.82e-06 1.01e-06 3.08e-06 1.02e-06 1.12e-06 1.05e-06 1.71e-06 1.93e-06 1.15e-06 2.84e-07 3.76e-07 1.22e-06 8.59e-07 8.86e-07 7.83e-07 3.35e-07 9.3e-07 2.58e-07 2.87e-07 3e-06 3.57e-07 1.74e-07 3.79e-07 3.05e-07 3.34e-07 1.7e-07 2.8e-07
ENSG00000118507 AKAP7 102119 4.65e-06 4.65e-06 7.85e-07 2.56e-06 1.12e-06 1.29e-06 4e-06 9.07e-07 4.2e-06 1.94e-06 4.84e-06 3.22e-06 7.05e-06 2.04e-06 1.2e-06 2.68e-06 2e-06 3.23e-06 1.35e-06 1.02e-06 2.41e-06 4.1e-06 3.67e-06 1.42e-06 5.85e-06 1.34e-06 2.21e-06 1.46e-06 4.26e-06 4.93e-06 2.51e-06 5.25e-07 7.92e-07 1.54e-06 2.03e-06 1.16e-06 9.83e-07 4.76e-07 8.5e-07 4.07e-07 4.63e-07 5.69e-06 3.96e-07 1.57e-07 3.43e-07 3.22e-07 6.8e-07 2.72e-07 3.23e-07