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Genes within 1Mb (chr6:131188237:C:CAT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 124915 sc-eQTL 1.37e-01 0.124 0.083 0.838 B L1
ENSG00000112282 MED23 -440005 sc-eQTL 9.13e-02 -0.154 0.091 0.838 B L1
ENSG00000118507 AKAP7 52770 sc-eQTL 8.93e-02 -0.184 0.108 0.838 B L1
ENSG00000164483 SAMD3 822812 sc-eQTL 5.72e-01 -0.0539 0.0954 0.838 B L1
ENSG00000228495 LINC01013 -943651 sc-eQTL 7.37e-01 -0.0243 0.0721 0.838 B L1
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.63e-01 0.0475 0.109 0.838 CD4T L1
ENSG00000112282 MED23 -440005 sc-eQTL 7.58e-01 0.0217 0.0704 0.838 CD4T L1
ENSG00000118507 AKAP7 52770 sc-eQTL 1.24e-02 -0.235 0.0931 0.838 CD4T L1
ENSG00000164483 SAMD3 822812 sc-eQTL 8.75e-01 -0.0131 0.0827 0.838 CD4T L1
ENSG00000112282 MED23 -440005 sc-eQTL 9.83e-01 -0.00181 0.0863 0.838 CD8T L1
ENSG00000118507 AKAP7 52770 sc-eQTL 9.20e-02 -0.165 0.0976 0.838 CD8T L1
ENSG00000164483 SAMD3 822812 sc-eQTL 5.43e-02 0.0865 0.0447 0.838 CD8T L1
ENSG00000079819 EPB41L2 124915 sc-eQTL 9.21e-01 0.00905 0.0917 0.836 DC L1
ENSG00000112282 MED23 -440005 sc-eQTL 6.90e-01 0.0471 0.118 0.836 DC L1
ENSG00000118507 AKAP7 52770 sc-eQTL 4.28e-03 -0.328 0.114 0.836 DC L1
ENSG00000079819 EPB41L2 124915 sc-eQTL 9.42e-01 0.00738 0.101 0.838 Mono L1
ENSG00000112282 MED23 -440005 sc-eQTL 6.33e-01 0.0469 0.0979 0.838 Mono L1
ENSG00000118507 AKAP7 52770 sc-eQTL 2.50e-02 -0.217 0.0961 0.838 Mono L1
ENSG00000112282 MED23 -440005 sc-eQTL 9.12e-01 -0.00919 0.0834 0.837 NK L1
ENSG00000118507 AKAP7 52770 sc-eQTL 3.62e-03 -0.288 0.0978 0.837 NK L1
ENSG00000164483 SAMD3 822812 sc-eQTL 4.72e-01 -0.04 0.0556 0.837 NK L1
ENSG00000079819 EPB41L2 124915 sc-eQTL 8.29e-01 0.0221 0.102 0.838 Other_T L1
ENSG00000112282 MED23 -440005 sc-eQTL 9.81e-01 -0.00274 0.116 0.838 Other_T L1
ENSG00000118507 AKAP7 52770 sc-eQTL 1.71e-01 -0.138 0.101 0.838 Other_T L1
ENSG00000164483 SAMD3 822812 sc-eQTL 7.09e-01 -0.0202 0.054 0.838 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 124915 sc-eQTL 1.11e-01 0.178 0.111 0.834 B_Activated L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.83e-01 0.115 0.132 0.834 B_Activated L2
ENSG00000118507 AKAP7 52770 sc-eQTL 3.19e-01 -0.131 0.131 0.834 B_Activated L2
ENSG00000164483 SAMD3 822812 sc-eQTL 2.66e-02 -0.198 0.0884 0.834 B_Activated L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 2.77e-01 0.123 0.113 0.834 B_Activated L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 1.12e-01 -0.185 0.116 0.837 B_Intermediate L2
ENSG00000112282 MED23 -440005 sc-eQTL 1.88e-01 0.148 0.112 0.837 B_Intermediate L2
ENSG00000118507 AKAP7 52770 sc-eQTL 4.16e-01 -0.093 0.114 0.837 B_Intermediate L2
ENSG00000164483 SAMD3 822812 sc-eQTL 2.88e-01 -0.102 0.0959 0.837 B_Intermediate L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 9.92e-01 -0.00105 0.104 0.837 B_Intermediate L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 3.02e-02 0.236 0.108 0.836 B_Memory L2
ENSG00000112282 MED23 -440005 sc-eQTL 2.04e-01 -0.145 0.114 0.836 B_Memory L2
ENSG00000118507 AKAP7 52770 sc-eQTL 8.38e-02 -0.206 0.118 0.836 B_Memory L2
ENSG00000164483 SAMD3 822812 sc-eQTL 6.62e-02 -0.199 0.108 0.836 B_Memory L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 9.52e-01 -0.00654 0.109 0.836 B_Memory L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 4.33e-01 0.0731 0.0931 0.838 B_Naive1 L2
ENSG00000112282 MED23 -440005 sc-eQTL 2.04e-01 -0.126 0.0988 0.838 B_Naive1 L2
ENSG00000118507 AKAP7 52770 sc-eQTL 3.18e-01 -0.124 0.124 0.838 B_Naive1 L2
ENSG00000164483 SAMD3 822812 sc-eQTL 9.80e-01 0.00247 0.0971 0.838 B_Naive1 L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 4.29e-01 -0.062 0.0782 0.838 B_Naive1 L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 7.55e-02 0.188 0.105 0.837 B_Naive2 L2
ENSG00000112282 MED23 -440005 sc-eQTL 2.52e-03 -0.362 0.118 0.837 B_Naive2 L2
ENSG00000118507 AKAP7 52770 sc-eQTL 2.31e-01 -0.152 0.127 0.837 B_Naive2 L2
ENSG00000164483 SAMD3 822812 sc-eQTL 4.15e-01 0.0672 0.0823 0.837 B_Naive2 L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 9.59e-01 -0.00429 0.0842 0.837 B_Naive2 L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 7.25e-02 0.178 0.0986 0.839 CD4_CTL L2
ENSG00000112282 MED23 -440005 sc-eQTL 4.33e-01 0.0999 0.127 0.839 CD4_CTL L2
ENSG00000118507 AKAP7 52770 sc-eQTL 6.75e-01 -0.0513 0.122 0.839 CD4_CTL L2
ENSG00000164483 SAMD3 822812 sc-eQTL 1.63e-01 -0.112 0.0799 0.839 CD4_CTL L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 9.99e-02 0.185 0.112 0.838 CD4_Naive L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.48e-01 0.0766 0.0814 0.838 CD4_Naive L2
ENSG00000118507 AKAP7 52770 sc-eQTL 4.49e-02 -0.213 0.106 0.838 CD4_Naive L2
ENSG00000164483 SAMD3 822812 sc-eQTL 8.45e-01 0.0192 0.0982 0.838 CD4_Naive L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 3.68e-01 -0.103 0.115 0.838 CD4_TCM L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.01e-01 -0.0913 0.0881 0.838 CD4_TCM L2
ENSG00000118507 AKAP7 52770 sc-eQTL 9.97e-02 -0.168 0.102 0.838 CD4_TCM L2
ENSG00000164483 SAMD3 822812 sc-eQTL 5.89e-01 0.0504 0.0933 0.838 CD4_TCM L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 9.15e-01 -0.013 0.122 0.838 CD4_TEM L2
ENSG00000112282 MED23 -440005 sc-eQTL 1.67e-01 -0.155 0.112 0.838 CD4_TEM L2
ENSG00000118507 AKAP7 52770 sc-eQTL 2.57e-04 -0.444 0.12 0.838 CD4_TEM L2
ENSG00000164483 SAMD3 822812 sc-eQTL 2.53e-01 -0.0897 0.0783 0.838 CD4_TEM L2
ENSG00000112282 MED23 -440005 sc-eQTL 1.15e-01 0.168 0.106 0.838 CD8_CTL L2
ENSG00000118507 AKAP7 52770 sc-eQTL 9.93e-01 0.001 0.119 0.838 CD8_CTL L2
ENSG00000164483 SAMD3 822812 sc-eQTL 6.22e-01 -0.0374 0.0758 0.838 CD8_CTL L2
ENSG00000112282 MED23 -440005 sc-eQTL 8.69e-01 -0.0163 0.0991 0.838 CD8_Naive L2
ENSG00000118507 AKAP7 52770 sc-eQTL 6.50e-02 -0.206 0.111 0.838 CD8_Naive L2
ENSG00000164483 SAMD3 822812 sc-eQTL 4.08e-02 0.202 0.0982 0.838 CD8_Naive L2
ENSG00000112282 MED23 -440005 sc-eQTL 2.05e-01 -0.158 0.124 0.84 CD8_TCM L2
ENSG00000118507 AKAP7 52770 sc-eQTL 6.34e-01 -0.0636 0.133 0.84 CD8_TCM L2
ENSG00000164483 SAMD3 822812 sc-eQTL 9.24e-01 -0.0108 0.114 0.84 CD8_TCM L2
ENSG00000112282 MED23 -440005 sc-eQTL 5.64e-01 0.0721 0.125 0.842 CD8_TEM L2
ENSG00000118507 AKAP7 52770 sc-eQTL 3.48e-01 0.119 0.127 0.842 CD8_TEM L2
ENSG00000164483 SAMD3 822812 sc-eQTL 3.74e-02 0.188 0.0897 0.842 CD8_TEM L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 3.05e-01 0.114 0.111 0.838 MAIT L2
ENSG00000112282 MED23 -440005 sc-eQTL 9.91e-01 -0.00133 0.121 0.838 MAIT L2
ENSG00000118507 AKAP7 52770 sc-eQTL 2.00e-01 -0.153 0.119 0.838 MAIT L2
ENSG00000164483 SAMD3 822812 sc-eQTL 9.23e-01 0.00693 0.0714 0.838 MAIT L2
ENSG00000112282 MED23 -440005 sc-eQTL 5.25e-01 0.0806 0.127 0.838 NK_CD56bright L2
ENSG00000118507 AKAP7 52770 sc-eQTL 3.02e-01 -0.127 0.122 0.838 NK_CD56bright L2
ENSG00000164483 SAMD3 822812 sc-eQTL 3.18e-02 -0.208 0.0961 0.838 NK_CD56bright L2
ENSG00000112282 MED23 -440005 sc-eQTL 6.83e-01 -0.0409 0.0998 0.838 NK_CD56dim L2
ENSG00000118507 AKAP7 52770 sc-eQTL 9.29e-02 -0.178 0.105 0.838 NK_CD56dim L2
ENSG00000164483 SAMD3 822812 sc-eQTL 5.21e-01 0.0372 0.0578 0.838 NK_CD56dim L2
ENSG00000112282 MED23 -440005 sc-eQTL 4.85e-01 0.0868 0.124 0.845 NK_HLA L2
ENSG00000118507 AKAP7 52770 sc-eQTL 6.91e-01 -0.0513 0.129 0.845 NK_HLA L2
ENSG00000164483 SAMD3 822812 sc-eQTL 9.12e-01 0.0118 0.106 0.845 NK_HLA L2
ENSG00000112282 MED23 -440005 sc-eQTL 5.03e-01 -0.0739 0.11 0.838 NK_cytokine L2
ENSG00000118507 AKAP7 52770 sc-eQTL 7.28e-02 -0.199 0.11 0.838 NK_cytokine L2
ENSG00000164483 SAMD3 822812 sc-eQTL 1.62e-01 -0.0972 0.0692 0.838 NK_cytokine L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 2.70e-01 0.171 0.154 0.807 PB L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.38e-01 0.14 0.145 0.807 PB L2
ENSG00000118507 AKAP7 52770 sc-eQTL 3.41e-01 0.135 0.142 0.807 PB L2
ENSG00000164483 SAMD3 822812 sc-eQTL 9.96e-01 0.000651 0.135 0.807 PB L2
ENSG00000228495 LINC01013 -943651 sc-eQTL 2.41e-01 -0.107 0.0913 0.807 PB L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 7.41e-01 0.036 0.109 0.837 Pro_T L2
ENSG00000112282 MED23 -440005 sc-eQTL 6.19e-01 0.0631 0.127 0.837 Pro_T L2
ENSG00000118507 AKAP7 52770 sc-eQTL 5.65e-01 -0.0626 0.109 0.837 Pro_T L2
ENSG00000164483 SAMD3 822812 sc-eQTL 5.93e-01 -0.0375 0.0701 0.837 Pro_T L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 8.07e-01 0.0287 0.117 0.838 Treg L2
ENSG00000112282 MED23 -440005 sc-eQTL 9.96e-01 -0.000551 0.121 0.838 Treg L2
ENSG00000118507 AKAP7 52770 sc-eQTL 2.27e-02 -0.236 0.103 0.838 Treg L2
ENSG00000164483 SAMD3 822812 sc-eQTL 8.14e-01 -0.0235 0.1 0.838 Treg L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.79e-01 0.0429 0.104 0.837 cDC L2
ENSG00000112282 MED23 -440005 sc-eQTL 4.54e-01 -0.0999 0.133 0.837 cDC L2
ENSG00000118507 AKAP7 52770 sc-eQTL 4.38e-02 -0.26 0.128 0.837 cDC L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.23e-01 0.054 0.11 0.838 cMono_IL1B L2
ENSG00000112282 MED23 -440005 sc-eQTL 7.23e-01 -0.0382 0.108 0.838 cMono_IL1B L2
ENSG00000118507 AKAP7 52770 sc-eQTL 1.48e-02 -0.254 0.103 0.838 cMono_IL1B L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 9.10e-01 -0.0129 0.114 0.838 cMono_S100A L2
ENSG00000112282 MED23 -440005 sc-eQTL 4.81e-01 0.0799 0.113 0.838 cMono_S100A L2
ENSG00000118507 AKAP7 52770 sc-eQTL 1.08e-01 -0.178 0.11 0.838 cMono_S100A L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.16e-01 -0.0668 0.133 0.848 gdT L2
ENSG00000112282 MED23 -440005 sc-eQTL 1.87e-01 -0.197 0.148 0.848 gdT L2
ENSG00000118507 AKAP7 52770 sc-eQTL 9.80e-01 -0.00393 0.156 0.848 gdT L2
ENSG00000164483 SAMD3 822812 sc-eQTL 2.85e-01 -0.127 0.118 0.848 gdT L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.65e-01 -0.0502 0.116 0.836 intMono L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.65e-01 -0.113 0.125 0.836 intMono L2
ENSG00000118507 AKAP7 52770 sc-eQTL 4.77e-02 -0.24 0.121 0.836 intMono L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 4.61e-01 -0.0818 0.111 0.833 ncMono L2
ENSG00000112282 MED23 -440005 sc-eQTL 5.55e-02 0.231 0.12 0.833 ncMono L2
ENSG00000118507 AKAP7 52770 sc-eQTL 8.00e-01 0.0297 0.117 0.833 ncMono L2
ENSG00000079819 EPB41L2 124915 sc-eQTL 6.70e-01 -0.0579 0.136 0.831 pDC L2
ENSG00000112282 MED23 -440005 sc-eQTL 3.17e-01 0.137 0.137 0.831 pDC L2
ENSG00000118507 AKAP7 52770 sc-eQTL 4.66e-01 -0.0818 0.112 0.831 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 124915 sc-eQTL 8.95e-01 -0.0141 0.106 0.838 B_Memory LOneK1K
ENSG00000112282 MED23 -440005 sc-eQTL 3.66e-01 0.0947 0.104 0.838 B_Memory LOneK1K
ENSG00000118507 AKAP7 52770 sc-eQTL 1.42e-01 -0.156 0.106 0.838 B_Memory LOneK1K
ENSG00000164483 SAMD3 822812 sc-eQTL 3.02e-02 -0.229 0.105 0.838 B_Memory LOneK1K
ENSG00000228495 LINC01013 -943651 sc-eQTL 7.56e-01 0.0339 0.109 0.838 B_Memory LOneK1K
ENSG00000079819 EPB41L2 124915 sc-eQTL 2.46e-01 0.102 0.0877 0.838 B_Naive LOneK1K
ENSG00000112282 MED23 -440005 sc-eQTL 1.23e-02 -0.242 0.0958 0.838 B_Naive LOneK1K
ENSG00000118507 AKAP7 52770 sc-eQTL 6.47e-02 -0.226 0.122 0.838 B_Naive LOneK1K
ENSG00000164483 SAMD3 822812 sc-eQTL 8.82e-01 0.0156 0.105 0.838 B_Naive LOneK1K
ENSG00000228495 LINC01013 -943651 sc-eQTL 7.16e-01 -0.0265 0.0729 0.838 B_Naive LOneK1K
ENSG00000079819 EPB41L2 124915 sc-eQTL 8.54e-01 0.0194 0.105 0.838 CD14_Mono LOneK1K
ENSG00000112282 MED23 -440005 sc-eQTL 9.13e-01 0.0111 0.102 0.838 CD14_Mono LOneK1K
ENSG00000118507 AKAP7 52770 sc-eQTL 2.38e-02 -0.224 0.0985 0.838 CD14_Mono LOneK1K
ENSG00000079819 EPB41L2 124915 sc-eQTL 5.19e-01 -0.0716 0.111 0.836 CD16_Mono LOneK1K
ENSG00000112282 MED23 -440005 sc-eQTL 9.51e-01 -0.00687 0.113 0.836 CD16_Mono LOneK1K
ENSG00000118507 AKAP7 52770 sc-eQTL 4.21e-01 -0.0932 0.116 0.836 CD16_Mono LOneK1K
ENSG00000112282 MED23 -440005 sc-eQTL 5.25e-01 -0.0565 0.0889 0.838 NK_CD56dim LOneK1K
ENSG00000118507 AKAP7 52770 sc-eQTL 4.96e-03 -0.274 0.0963 0.838 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 822812 sc-eQTL 7.68e-01 -0.0158 0.0534 0.838 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079819 EPB41L2 124915 eQTL 0.0178 -0.0713 0.03 0.0 0.0 0.144
ENSG00000118507 AKAP7 52770 eQTL 8.73e-07 -0.144 0.0291 0.0 0.0 0.144
ENSG00000154269 ENPP3 -440205 eQTL 0.0443 0.07 0.0348 0.0 0.0 0.144

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118507 AKAP7 52770 5.29e-05 4.52e-05 1.17e-05 1.71e-05 6.29e-06 1.37e-05 4.59e-05 3.82e-06 3.69e-05 1.78e-05 3.84e-05 2.16e-05 5.27e-05 1.71e-05 9.38e-06 2.35e-05 2.82e-05 2.71e-05 8.31e-06 5.95e-06 1.86e-05 4.19e-05 3.24e-05 1.05e-05 5.79e-05 9.97e-06 1.78e-05 1.29e-05 3.23e-05 2.9e-05 1.92e-05 1.65e-06 1.91e-06 7.83e-06 1.3e-05 5.98e-06 3.82e-06 3.26e-06 5.03e-06 2.86e-06 1.76e-06 4.48e-05 5.65e-06 5.25e-07 3.22e-06 3.81e-06 4.52e-06 1.72e-06 1.52e-06
ENSG00000164484 \N 822503 1.29e-06 1.91e-06 8.34e-07 1.86e-06 3.82e-07 7.12e-07 1.41e-06 2.62e-07 1.77e-06 6.65e-07 2.12e-06 1.26e-06 2.55e-06 2.33e-06 6.94e-07 8.02e-07 9.79e-07 1.17e-06 5.86e-07 1.55e-07 7.74e-07 1.92e-06 7.39e-07 6.39e-07 2.32e-06 4.23e-07 1e-06 9.09e-07 1.04e-06 1.67e-06 7.32e-07 6.78e-08 5.64e-08 1.14e-06 8.27e-07 4.89e-07 6.89e-07 1.41e-07 1.49e-07 1.87e-08 5.14e-08 1.51e-06 4.6e-07 1.58e-07 3.91e-07 2.46e-07 2.14e-07 5.66e-08 4.98e-08