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Genes within 1Mb (chr6:131123398:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 60076 sc-eQTL 2.31e-02 -0.153 0.0668 0.291 B L1
ENSG00000112282 MED23 -504844 sc-eQTL 5.20e-01 -0.0477 0.0741 0.291 B L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 7.83e-02 0.154 0.0872 0.291 B L1
ENSG00000164483 SAMD3 757973 sc-eQTL 7.26e-01 -0.0271 0.0773 0.291 B L1
ENSG00000079819 EPB41L2 60076 sc-eQTL 6.40e-01 -0.0415 0.0887 0.291 CD4T L1
ENSG00000112282 MED23 -504844 sc-eQTL 3.74e-01 0.0511 0.0574 0.291 CD4T L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.28e-04 0.26 0.075 0.291 CD4T L1
ENSG00000164483 SAMD3 757973 sc-eQTL 3.50e-02 -0.142 0.0668 0.291 CD4T L1
ENSG00000112282 MED23 -504844 sc-eQTL 6.91e-01 -0.0281 0.0706 0.291 CD8T L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.54e-03 0.252 0.0786 0.291 CD8T L1
ENSG00000164483 SAMD3 757973 sc-eQTL 9.96e-02 -0.0607 0.0367 0.291 CD8T L1
ENSG00000079819 EPB41L2 60076 sc-eQTL 2.17e-01 0.0947 0.0765 0.288 DC L1
ENSG00000112282 MED23 -504844 sc-eQTL 4.99e-01 0.0667 0.0985 0.288 DC L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.14e-02 0.244 0.0955 0.288 DC L1
ENSG00000079819 EPB41L2 60076 sc-eQTL 9.24e-01 -0.00778 0.0817 0.291 Mono L1
ENSG00000112282 MED23 -504844 sc-eQTL 6.13e-01 0.0402 0.0794 0.291 Mono L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.64e-02 0.174 0.0779 0.291 Mono L1
ENSG00000112282 MED23 -504844 sc-eQTL 3.66e-01 0.0604 0.0667 0.292 NK L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 4.50e-03 0.225 0.0784 0.292 NK L1
ENSG00000164483 SAMD3 757973 sc-eQTL 7.38e-01 0.0149 0.0446 0.292 NK L1
ENSG00000227678 AL355581.1 977219 sc-eQTL 6.51e-01 0.0411 0.0908 0.292 NK L1
ENSG00000079819 EPB41L2 60076 sc-eQTL 7.45e-02 -0.146 0.0815 0.291 Other_T L1
ENSG00000112282 MED23 -504844 sc-eQTL 2.16e-01 -0.115 0.0925 0.291 Other_T L1
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.83e-01 0.108 0.0808 0.291 Other_T L1
ENSG00000164483 SAMD3 757973 sc-eQTL 4.86e-01 0.0302 0.0433 0.291 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.15e-01 -0.145 0.0917 0.298 B_Activated L2
ENSG00000112282 MED23 -504844 sc-eQTL 9.79e-02 0.18 0.108 0.298 B_Activated L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 8.32e-01 -0.023 0.109 0.298 B_Activated L2
ENSG00000164483 SAMD3 757973 sc-eQTL 4.74e-01 0.0531 0.074 0.298 B_Activated L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 6.49e-02 -0.173 0.0935 0.29 B_Intermediate L2
ENSG00000112282 MED23 -504844 sc-eQTL 1.66e-02 -0.216 0.0895 0.29 B_Intermediate L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.49e-01 0.042 0.0922 0.29 B_Intermediate L2
ENSG00000164483 SAMD3 757973 sc-eQTL 4.08e-01 -0.0642 0.0775 0.29 B_Intermediate L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 9.16e-01 -0.00928 0.0881 0.291 B_Memory L2
ENSG00000112282 MED23 -504844 sc-eQTL 5.96e-01 0.049 0.0923 0.291 B_Memory L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.88e-01 0.0387 0.0961 0.291 B_Memory L2
ENSG00000164483 SAMD3 757973 sc-eQTL 8.97e-02 0.148 0.087 0.291 B_Memory L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.59e-01 -0.106 0.0749 0.291 B_Naive1 L2
ENSG00000112282 MED23 -504844 sc-eQTL 5.09e-01 0.0529 0.08 0.291 B_Naive1 L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 7.36e-02 0.179 0.0994 0.291 B_Naive1 L2
ENSG00000164483 SAMD3 757973 sc-eQTL 2.70e-01 -0.0863 0.0781 0.291 B_Naive1 L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 3.94e-01 -0.0731 0.0856 0.29 B_Naive2 L2
ENSG00000112282 MED23 -504844 sc-eQTL 2.46e-01 0.114 0.0975 0.29 B_Naive2 L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.60e-01 0.116 0.102 0.29 B_Naive2 L2
ENSG00000164483 SAMD3 757973 sc-eQTL 7.68e-01 0.0197 0.0667 0.29 B_Naive2 L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 7.80e-01 -0.0231 0.0827 0.282 CD4_CTL L2
ENSG00000112282 MED23 -504844 sc-eQTL 2.01e-01 0.136 0.106 0.282 CD4_CTL L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 7.13e-02 0.183 0.101 0.282 CD4_CTL L2
ENSG00000164483 SAMD3 757973 sc-eQTL 5.93e-01 0.0357 0.0668 0.282 CD4_CTL L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 5.19e-01 -0.0595 0.0922 0.291 CD4_Naive L2
ENSG00000112282 MED23 -504844 sc-eQTL 7.48e-01 0.0216 0.0669 0.291 CD4_Naive L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 7.47e-03 0.232 0.086 0.291 CD4_Naive L2
ENSG00000164483 SAMD3 757973 sc-eQTL 1.58e-02 -0.193 0.0795 0.291 CD4_Naive L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 6.13e-01 0.0473 0.0935 0.291 CD4_TCM L2
ENSG00000112282 MED23 -504844 sc-eQTL 4.36e-02 0.144 0.0711 0.291 CD4_TCM L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.19e-02 0.19 0.0823 0.291 CD4_TCM L2
ENSG00000164483 SAMD3 757973 sc-eQTL 9.81e-02 -0.125 0.0755 0.291 CD4_TCM L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 4.91e-01 -0.0685 0.0994 0.291 CD4_TEM L2
ENSG00000112282 MED23 -504844 sc-eQTL 3.29e-01 0.0894 0.0914 0.291 CD4_TEM L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.54e-02 0.243 0.0992 0.291 CD4_TEM L2
ENSG00000164483 SAMD3 757973 sc-eQTL 4.11e-01 -0.0527 0.064 0.291 CD4_TEM L2
ENSG00000112282 MED23 -504844 sc-eQTL 6.09e-01 0.0444 0.0866 0.291 CD8_CTL L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.84e-01 0.129 0.0966 0.291 CD8_CTL L2
ENSG00000164483 SAMD3 757973 sc-eQTL 3.66e-01 0.0558 0.0615 0.291 CD8_CTL L2
ENSG00000112282 MED23 -504844 sc-eQTL 9.50e-01 -0.00501 0.08 0.291 CD8_Naive L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 4.42e-03 0.255 0.0887 0.291 CD8_Naive L2
ENSG00000164483 SAMD3 757973 sc-eQTL 1.06e-01 -0.129 0.0797 0.291 CD8_Naive L2
ENSG00000112282 MED23 -504844 sc-eQTL 9.71e-01 -0.00373 0.101 0.28 CD8_TCM L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 3.18e-01 -0.108 0.108 0.28 CD8_TCM L2
ENSG00000164483 SAMD3 757973 sc-eQTL 2.82e-01 -0.099 0.0918 0.28 CD8_TCM L2
ENSG00000112282 MED23 -504844 sc-eQTL 1.23e-01 -0.154 0.0996 0.29 CD8_TEM L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.57e-02 0.226 0.101 0.29 CD8_TEM L2
ENSG00000164483 SAMD3 757973 sc-eQTL 5.12e-01 -0.0477 0.0727 0.29 CD8_TEM L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 7.12e-01 -0.0341 0.0921 0.286 MAIT L2
ENSG00000112282 MED23 -504844 sc-eQTL 3.15e-01 -0.101 0.1 0.286 MAIT L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.18e-01 0.155 0.0985 0.286 MAIT L2
ENSG00000164483 SAMD3 757973 sc-eQTL 9.80e-01 -0.00151 0.0591 0.286 MAIT L2
ENSG00000112282 MED23 -504844 sc-eQTL 4.69e-01 -0.0747 0.103 0.293 NK_CD56bright L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.88e-01 -0.0403 0.1 0.293 NK_CD56bright L2
ENSG00000164483 SAMD3 757973 sc-eQTL 5.33e-01 0.0495 0.0791 0.293 NK_CD56bright L2
ENSG00000227678 AL355581.1 977219 sc-eQTL 9.90e-01 0.00116 0.0918 0.293 NK_CD56bright L2
ENSG00000112282 MED23 -504844 sc-eQTL 2.06e-01 0.101 0.0798 0.291 NK_CD56dim L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.02e-02 0.217 0.0837 0.291 NK_CD56dim L2
ENSG00000164483 SAMD3 757973 sc-eQTL 8.57e-01 0.00836 0.0464 0.291 NK_CD56dim L2
ENSG00000227678 AL355581.1 977219 sc-eQTL 8.68e-01 0.0156 0.0938 0.291 NK_CD56dim L2
ENSG00000112282 MED23 -504844 sc-eQTL 9.23e-01 -0.00942 0.0969 0.29 NK_HLA L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.87e-02 0.235 0.099 0.29 NK_HLA L2
ENSG00000164483 SAMD3 757973 sc-eQTL 6.20e-01 -0.041 0.0826 0.29 NK_HLA L2
ENSG00000227678 AL355581.1 977219 sc-eQTL 2.60e-01 0.103 0.0912 0.29 NK_HLA L2
ENSG00000112282 MED23 -504844 sc-eQTL 3.83e-01 0.0769 0.0879 0.291 NK_cytokine L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.09e-01 0.142 0.0884 0.291 NK_cytokine L2
ENSG00000164483 SAMD3 757973 sc-eQTL 3.59e-01 0.051 0.0554 0.291 NK_cytokine L2
ENSG00000227678 AL355581.1 977219 sc-eQTL 7.61e-01 0.0292 0.096 0.291 NK_cytokine L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.10e-01 -0.201 0.125 0.311 PB L2
ENSG00000112282 MED23 -504844 sc-eQTL 9.16e-01 0.0127 0.119 0.311 PB L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.61e-01 0.13 0.116 0.311 PB L2
ENSG00000164483 SAMD3 757973 sc-eQTL 2.11e-01 -0.138 0.109 0.311 PB L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 2.60e-01 -0.0984 0.0871 0.289 Pro_T L2
ENSG00000112282 MED23 -504844 sc-eQTL 1.10e-01 -0.162 0.101 0.289 Pro_T L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.31e-01 -0.0419 0.0871 0.289 Pro_T L2
ENSG00000164483 SAMD3 757973 sc-eQTL 7.01e-01 0.0217 0.0563 0.289 Pro_T L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 2.05e-01 -0.12 0.0947 0.291 Treg L2
ENSG00000112282 MED23 -504844 sc-eQTL 7.35e-01 0.0331 0.0977 0.291 Treg L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 4.39e-04 0.292 0.0818 0.291 Treg L2
ENSG00000164483 SAMD3 757973 sc-eQTL 8.33e-01 -0.0172 0.0811 0.291 Treg L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.58e-01 0.123 0.0865 0.28 cDC L2
ENSG00000112282 MED23 -504844 sc-eQTL 1.23e-01 0.172 0.111 0.28 cDC L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.19e-02 0.271 0.107 0.28 cDC L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 5.00e-01 -0.0608 0.0901 0.291 cMono_IL1B L2
ENSG00000112282 MED23 -504844 sc-eQTL 3.41e-01 0.0844 0.0884 0.291 cMono_IL1B L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.36e-02 0.212 0.085 0.291 cMono_IL1B L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 5.01e-01 -0.063 0.0935 0.291 cMono_S100A L2
ENSG00000112282 MED23 -504844 sc-eQTL 4.26e-01 -0.0739 0.0928 0.291 cMono_S100A L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 6.52e-02 0.167 0.0902 0.291 cMono_S100A L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.51e-01 -0.151 0.104 0.27 gdT L2
ENSG00000112282 MED23 -504844 sc-eQTL 2.77e-01 0.128 0.117 0.27 gdT L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 3.62e-02 0.256 0.121 0.27 gdT L2
ENSG00000164483 SAMD3 757973 sc-eQTL 8.63e-01 -0.0161 0.0936 0.27 gdT L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 9.30e-01 -0.00836 0.0954 0.289 intMono L2
ENSG00000112282 MED23 -504844 sc-eQTL 5.69e-01 0.0586 0.103 0.289 intMono L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 9.06e-01 0.0119 0.1 0.289 intMono L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 5.41e-01 0.0551 0.09 0.292 ncMono L2
ENSG00000112282 MED23 -504844 sc-eQTL 4.79e-01 -0.0696 0.0981 0.292 ncMono L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 9.40e-01 0.00715 0.0952 0.292 ncMono L2
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.30e-01 0.173 0.113 0.277 pDC L2
ENSG00000112282 MED23 -504844 sc-eQTL 8.97e-01 -0.015 0.115 0.277 pDC L2
ENSG00000118507 AKAP7 -12069 sc-eQTL 9.44e-01 0.00668 0.0942 0.277 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 60076 sc-eQTL 1.30e-01 -0.128 0.0845 0.291 B_Memory LOneK1K
ENSG00000112282 MED23 -504844 sc-eQTL 8.74e-02 -0.142 0.0829 0.291 B_Memory LOneK1K
ENSG00000118507 AKAP7 -12069 sc-eQTL 3.06e-01 0.0869 0.0846 0.291 B_Memory LOneK1K
ENSG00000164483 SAMD3 757973 sc-eQTL 1.53e-01 0.121 0.0842 0.291 B_Memory LOneK1K
ENSG00000079819 EPB41L2 60076 sc-eQTL 5.76e-02 -0.135 0.0709 0.291 B_Naive LOneK1K
ENSG00000112282 MED23 -504844 sc-eQTL 4.82e-01 0.0556 0.079 0.291 B_Naive LOneK1K
ENSG00000118507 AKAP7 -12069 sc-eQTL 7.52e-02 0.177 0.0989 0.291 B_Naive LOneK1K
ENSG00000164483 SAMD3 757973 sc-eQTL 3.47e-01 -0.0805 0.0854 0.291 B_Naive LOneK1K
ENSG00000079819 EPB41L2 60076 sc-eQTL 3.21e-01 -0.0845 0.085 0.291 CD14_Mono LOneK1K
ENSG00000112282 MED23 -504844 sc-eQTL 7.28e-01 0.0286 0.0821 0.291 CD14_Mono LOneK1K
ENSG00000118507 AKAP7 -12069 sc-eQTL 1.55e-02 0.194 0.0795 0.291 CD14_Mono LOneK1K
ENSG00000079819 EPB41L2 60076 sc-eQTL 4.35e-01 0.0709 0.0906 0.291 CD16_Mono LOneK1K
ENSG00000112282 MED23 -504844 sc-eQTL 7.95e-01 0.024 0.0922 0.291 CD16_Mono LOneK1K
ENSG00000118507 AKAP7 -12069 sc-eQTL 3.49e-01 0.0886 0.0945 0.291 CD16_Mono LOneK1K
ENSG00000112282 MED23 -504844 sc-eQTL 2.13e-01 0.0887 0.0709 0.291 NK_CD56dim LOneK1K
ENSG00000118507 AKAP7 -12069 sc-eQTL 2.10e-03 0.239 0.0768 0.291 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 757973 sc-eQTL 8.39e-01 0.0087 0.0427 0.291 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 977219 sc-eQTL 7.56e-01 0.0287 0.0922 0.291 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000118507 AKAP7 -12069 eQTL 3.03e-08 0.116 0.0208 0.0 0.0 0.325

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118507 AKAP7 -12069 2.84e-05 2.91e-05 6.07e-06 1.54e-05 5.81e-06 1.37e-05 4.02e-05 4.96e-06 2.88e-05 1.45e-05 3.61e-05 1.67e-05 4.6e-05 1.32e-05 6.69e-06 1.79e-05 1.61e-05 2.41e-05 7.62e-06 7.09e-06 1.49e-05 2.96e-05 2.94e-05 9.41e-06 4.2e-05 7.99e-06 1.38e-05 1.26e-05 2.98e-05 2.67e-05 1.9e-05 1.65e-06 2.95e-06 7.77e-06 1.16e-05 6.19e-06 3.49e-06 3.25e-06 5.18e-06 3.57e-06 1.78e-06 3.51e-05 3.46e-06 4.29e-07 2.67e-06 4.28e-06 4.08e-06 1.76e-06 1.53e-06