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Genes within 1Mb (chr6:131107992:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 44670 sc-eQTL 3.47e-04 -0.217 0.0596 0.63 B L1
ENSG00000112282 MED23 -520250 sc-eQTL 7.17e-01 0.0245 0.0674 0.63 B L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.30e-06 0.376 0.0755 0.63 B L1
ENSG00000164483 SAMD3 742567 sc-eQTL 8.34e-01 0.0148 0.0703 0.63 B L1
ENSG00000079819 EPB41L2 44670 sc-eQTL 9.77e-02 -0.133 0.0801 0.63 CD4T L1
ENSG00000112282 MED23 -520250 sc-eQTL 2.16e-01 0.0645 0.052 0.63 CD4T L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.54e-04 0.239 0.0681 0.63 CD4T L1
ENSG00000164483 SAMD3 742567 sc-eQTL 5.54e-01 -0.0363 0.0612 0.63 CD4T L1
ENSG00000112282 MED23 -520250 sc-eQTL 7.03e-01 0.0245 0.064 0.63 CD8T L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.88e-05 0.288 0.0702 0.63 CD8T L1
ENSG00000164483 SAMD3 742567 sc-eQTL 5.56e-01 0.0197 0.0334 0.63 CD8T L1
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.31e-02 -0.168 0.0671 0.626 DC L1
ENSG00000112282 MED23 -520250 sc-eQTL 9.72e-01 -0.00308 0.0875 0.626 DC L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 7.54e-01 -0.027 0.0861 0.626 DC L1
ENSG00000079819 EPB41L2 44670 sc-eQTL 7.70e-06 -0.326 0.0711 0.63 Mono L1
ENSG00000112282 MED23 -520250 sc-eQTL 4.31e-02 0.146 0.0718 0.63 Mono L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.26e-01 -0.11 0.0716 0.63 Mono L1
ENSG00000112282 MED23 -520250 sc-eQTL 8.25e-02 0.106 0.0606 0.629 NK L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.56e-03 0.205 0.0716 0.629 NK L1
ENSG00000164483 SAMD3 742567 sc-eQTL 6.43e-01 0.0189 0.0407 0.629 NK L1
ENSG00000227678 AL355581.1 961813 sc-eQTL 8.70e-01 -0.0136 0.083 0.629 NK L1
ENSG00000079819 EPB41L2 44670 sc-eQTL 7.68e-02 -0.132 0.0744 0.63 Other_T L1
ENSG00000112282 MED23 -520250 sc-eQTL 9.06e-02 -0.143 0.0842 0.63 Other_T L1
ENSG00000118507 AKAP7 -27475 sc-eQTL 2.35e-03 0.223 0.0724 0.63 Other_T L1
ENSG00000164483 SAMD3 742567 sc-eQTL 5.54e-01 -0.0234 0.0395 0.63 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 44670 sc-eQTL 5.07e-01 0.0534 0.0803 0.635 B_Activated L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.07e-01 0.153 0.0942 0.635 B_Activated L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 8.17e-01 -0.0219 0.0946 0.635 B_Activated L2
ENSG00000164483 SAMD3 742567 sc-eQTL 8.38e-01 0.0132 0.0645 0.635 B_Activated L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 5.53e-03 -0.236 0.084 0.631 B_Intermediate L2
ENSG00000112282 MED23 -520250 sc-eQTL 2.55e-02 -0.183 0.0814 0.631 B_Intermediate L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.23e-02 0.208 0.0825 0.631 B_Intermediate L2
ENSG00000164483 SAMD3 742567 sc-eQTL 1.49e-01 -0.102 0.0702 0.631 B_Intermediate L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.41e-01 -0.118 0.08 0.629 B_Memory L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.17e-01 0.0684 0.0841 0.629 B_Memory L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.44e-01 0.128 0.0873 0.629 B_Memory L2
ENSG00000164483 SAMD3 742567 sc-eQTL 1.27e-01 0.122 0.0795 0.629 B_Memory L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.73e-02 -0.163 0.0681 0.63 B_Naive1 L2
ENSG00000112282 MED23 -520250 sc-eQTL 5.28e-01 0.0464 0.0734 0.63 B_Naive1 L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.85e-06 0.411 0.0875 0.63 B_Naive1 L2
ENSG00000164483 SAMD3 742567 sc-eQTL 1.69e-01 -0.0988 0.0716 0.63 B_Naive1 L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 9.37e-02 -0.131 0.0781 0.629 B_Naive2 L2
ENSG00000112282 MED23 -520250 sc-eQTL 2.03e-02 0.207 0.0885 0.629 B_Naive2 L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 8.30e-03 0.247 0.0926 0.629 B_Naive2 L2
ENSG00000164483 SAMD3 742567 sc-eQTL 7.46e-01 -0.0198 0.0611 0.629 B_Naive2 L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 3.08e-03 -0.216 0.072 0.63 CD4_CTL L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.49e-01 0.136 0.0939 0.63 CD4_CTL L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 6.00e-01 0.0475 0.0904 0.63 CD4_CTL L2
ENSG00000164483 SAMD3 742567 sc-eQTL 6.80e-02 0.108 0.059 0.63 CD4_CTL L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.18e-01 -0.129 0.0825 0.63 CD4_Naive L2
ENSG00000112282 MED23 -520250 sc-eQTL 7.74e-01 0.0173 0.0601 0.63 CD4_Naive L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.04e-04 0.274 0.0763 0.63 CD4_Naive L2
ENSG00000164483 SAMD3 742567 sc-eQTL 2.53e-01 -0.0828 0.0722 0.63 CD4_Naive L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 8.35e-01 -0.0178 0.0856 0.63 CD4_TCM L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.41e-02 0.16 0.0648 0.63 CD4_TCM L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 6.48e-02 0.14 0.0757 0.63 CD4_TCM L2
ENSG00000164483 SAMD3 742567 sc-eQTL 8.41e-01 -0.014 0.0695 0.63 CD4_TCM L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 4.05e-01 0.0753 0.0903 0.63 CD4_TEM L2
ENSG00000112282 MED23 -520250 sc-eQTL 9.00e-01 -0.0104 0.0833 0.63 CD4_TEM L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 3.59e-02 0.191 0.0906 0.63 CD4_TEM L2
ENSG00000164483 SAMD3 742567 sc-eQTL 2.74e-01 0.0637 0.0581 0.63 CD4_TEM L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.56e-02 0.153 0.0761 0.63 CD8_CTL L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.70e-03 0.236 0.0844 0.63 CD8_CTL L2
ENSG00000164483 SAMD3 742567 sc-eQTL 5.36e-01 0.0338 0.0546 0.63 CD8_CTL L2
ENSG00000112282 MED23 -520250 sc-eQTL 9.18e-01 0.00747 0.0726 0.63 CD8_Naive L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 7.24e-03 0.218 0.0806 0.63 CD8_Naive L2
ENSG00000164483 SAMD3 742567 sc-eQTL 7.09e-01 0.0272 0.0727 0.63 CD8_Naive L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.06e-01 -0.0773 0.0929 0.623 CD8_TCM L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 9.46e-02 0.167 0.0992 0.623 CD8_TCM L2
ENSG00000164483 SAMD3 742567 sc-eQTL 6.78e-01 0.0354 0.0852 0.623 CD8_TCM L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.22e-01 0.141 0.0908 0.63 CD8_TEM L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 7.29e-02 0.166 0.0922 0.63 CD8_TEM L2
ENSG00000164483 SAMD3 742567 sc-eQTL 6.28e-01 -0.0321 0.0663 0.63 CD8_TEM L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 3.61e-01 -0.0771 0.0842 0.628 MAIT L2
ENSG00000112282 MED23 -520250 sc-eQTL 7.62e-01 0.0278 0.0919 0.628 MAIT L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.98e-02 0.178 0.09 0.628 MAIT L2
ENSG00000164483 SAMD3 742567 sc-eQTL 7.36e-01 -0.0183 0.0542 0.628 MAIT L2
ENSG00000112282 MED23 -520250 sc-eQTL 6.55e-01 0.0421 0.0942 0.631 NK_CD56bright L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.70e-01 -0.052 0.0913 0.631 NK_CD56bright L2
ENSG00000164483 SAMD3 742567 sc-eQTL 5.98e-01 0.0382 0.0723 0.631 NK_CD56bright L2
ENSG00000227678 AL355581.1 961813 sc-eQTL 5.42e-01 0.0511 0.0838 0.631 NK_CD56bright L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.77e-01 0.0978 0.0722 0.629 NK_CD56dim L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.94e-03 0.236 0.0753 0.629 NK_CD56dim L2
ENSG00000164483 SAMD3 742567 sc-eQTL 5.52e-01 0.025 0.042 0.629 NK_CD56dim L2
ENSG00000227678 AL355581.1 961813 sc-eQTL 9.69e-01 -0.00331 0.085 0.629 NK_CD56dim L2
ENSG00000112282 MED23 -520250 sc-eQTL 2.54e-01 -0.1 0.0878 0.63 NK_HLA L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 2.69e-04 0.327 0.0882 0.63 NK_HLA L2
ENSG00000164483 SAMD3 742567 sc-eQTL 2.15e-01 0.0931 0.0748 0.63 NK_HLA L2
ENSG00000227678 AL355581.1 961813 sc-eQTL 9.00e-02 0.141 0.0825 0.63 NK_HLA L2
ENSG00000112282 MED23 -520250 sc-eQTL 2.90e-02 0.175 0.0796 0.629 NK_cytokine L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.57e-02 0.155 0.0806 0.629 NK_cytokine L2
ENSG00000164483 SAMD3 742567 sc-eQTL 8.18e-02 0.0882 0.0504 0.629 NK_cytokine L2
ENSG00000227678 AL355581.1 961813 sc-eQTL 8.38e-01 0.018 0.0878 0.629 NK_cytokine L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 6.25e-01 -0.0582 0.119 0.648 PB L2
ENSG00000112282 MED23 -520250 sc-eQTL 9.34e-01 -0.00937 0.112 0.648 PB L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.01e-01 -0.0916 0.109 0.648 PB L2
ENSG00000164483 SAMD3 742567 sc-eQTL 5.62e-01 -0.0601 0.103 0.648 PB L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 2.71e-01 -0.0855 0.0774 0.63 Pro_T L2
ENSG00000112282 MED23 -520250 sc-eQTL 1.52e-02 -0.218 0.089 0.63 Pro_T L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 7.81e-01 -0.0215 0.0774 0.63 Pro_T L2
ENSG00000164483 SAMD3 742567 sc-eQTL 7.01e-01 -0.0192 0.05 0.63 Pro_T L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 7.06e-02 -0.158 0.0867 0.63 Treg L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.99e-01 -0.0609 0.0898 0.63 Treg L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.84e-01 0.0543 0.0775 0.63 Treg L2
ENSG00000164483 SAMD3 742567 sc-eQTL 1.17e-01 -0.117 0.0742 0.63 Treg L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.80e-03 -0.233 0.0736 0.629 cDC L2
ENSG00000112282 MED23 -520250 sc-eQTL 3.49e-01 0.091 0.097 0.629 cDC L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 9.63e-01 0.00444 0.0944 0.629 cDC L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.72e-04 -0.302 0.0789 0.63 cMono_IL1B L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.17e-02 0.163 0.0794 0.63 cMono_IL1B L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.29e-01 -0.0617 0.078 0.63 cMono_IL1B L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 2.47e-03 -0.253 0.0827 0.63 cMono_S100A L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.87e-01 -0.0584 0.0839 0.63 cMono_S100A L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.44e-02 -0.165 0.0814 0.63 cMono_S100A L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 4.09e-01 -0.0801 0.0967 0.627 gdT L2
ENSG00000112282 MED23 -520250 sc-eQTL 5.98e-01 0.0576 0.109 0.627 gdT L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.75e-02 0.268 0.111 0.627 gdT L2
ENSG00000164483 SAMD3 742567 sc-eQTL 5.62e-01 0.0502 0.0864 0.627 gdT L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 5.64e-04 -0.292 0.0833 0.629 intMono L2
ENSG00000112282 MED23 -520250 sc-eQTL 7.38e-02 0.165 0.0917 0.629 intMono L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 5.52e-01 -0.0537 0.0901 0.629 intMono L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 9.87e-02 -0.134 0.0805 0.627 ncMono L2
ENSG00000112282 MED23 -520250 sc-eQTL 3.94e-01 0.0753 0.0881 0.627 ncMono L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 6.78e-01 0.0356 0.0856 0.627 ncMono L2
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.06e-01 0.163 0.1 0.63 pDC L2
ENSG00000112282 MED23 -520250 sc-eQTL 4.03e-01 -0.0856 0.102 0.63 pDC L2
ENSG00000118507 AKAP7 -27475 sc-eQTL 4.13e-01 0.0683 0.0833 0.63 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 44670 sc-eQTL 2.09e-02 -0.178 0.0767 0.63 B_Memory LOneK1K
ENSG00000112282 MED23 -520250 sc-eQTL 3.49e-01 -0.0715 0.0762 0.63 B_Memory LOneK1K
ENSG00000118507 AKAP7 -27475 sc-eQTL 1.01e-02 0.198 0.0763 0.63 B_Memory LOneK1K
ENSG00000164483 SAMD3 742567 sc-eQTL 3.77e-01 0.0684 0.0772 0.63 B_Memory LOneK1K
ENSG00000079819 EPB41L2 44670 sc-eQTL 1.97e-03 -0.201 0.0641 0.63 B_Naive LOneK1K
ENSG00000112282 MED23 -520250 sc-eQTL 1.20e-01 0.113 0.0722 0.63 B_Naive LOneK1K
ENSG00000118507 AKAP7 -27475 sc-eQTL 2.52e-06 0.42 0.0868 0.63 B_Naive LOneK1K
ENSG00000164483 SAMD3 742567 sc-eQTL 5.60e-02 -0.15 0.0778 0.63 B_Naive LOneK1K
ENSG00000079819 EPB41L2 44670 sc-eQTL 2.62e-06 -0.357 0.074 0.63 CD14_Mono LOneK1K
ENSG00000112282 MED23 -520250 sc-eQTL 1.90e-01 0.0984 0.0748 0.63 CD14_Mono LOneK1K
ENSG00000118507 AKAP7 -27475 sc-eQTL 9.28e-02 -0.124 0.0732 0.63 CD14_Mono LOneK1K
ENSG00000079819 EPB41L2 44670 sc-eQTL 3.65e-03 -0.238 0.0809 0.627 CD16_Mono LOneK1K
ENSG00000112282 MED23 -520250 sc-eQTL 1.21e-01 0.13 0.0835 0.627 CD16_Mono LOneK1K
ENSG00000118507 AKAP7 -27475 sc-eQTL 7.23e-01 -0.0306 0.0861 0.627 CD16_Mono LOneK1K
ENSG00000112282 MED23 -520250 sc-eQTL 1.36e-01 0.0965 0.0645 0.629 NK_CD56dim LOneK1K
ENSG00000118507 AKAP7 -27475 sc-eQTL 2.09e-04 0.261 0.0692 0.629 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 742567 sc-eQTL 3.63e-01 0.0354 0.0388 0.629 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 961813 sc-eQTL 9.34e-01 -0.007 0.084 0.629 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079819 EPB41L2 44670 eQTL 1.51e-28 -0.235 0.0205 0.0 0.0 0.365
ENSG00000118507 AKAP7 -27475 eQTL 3.66e-07 0.108 0.0211 0.0 0.0 0.365
ENSG00000118523 CCN2 -843380 pQTL 0.0105 0.056 0.0219 0.00111 0.0 0.367

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079819 EPB41L2 44670 8.09e-06 1.13e-05 1.56e-06 5.85e-06 2.38e-06 4.21e-06 1.06e-05 1.69e-06 9.27e-06 4.92e-06 1.24e-05 5.63e-06 1.55e-05 3.61e-06 2.77e-06 6.38e-06 4.86e-06 7.04e-06 2.54e-06 2.88e-06 5.16e-06 9.51e-06 8.83e-06 3.35e-06 1.58e-05 3.89e-06 4.87e-06 4.08e-06 1.02e-05 1.02e-05 5.67e-06 9.9e-07 1.29e-06 3.31e-06 4.61e-06 2.81e-06 1.83e-06 1.95e-06 2.19e-06 9.75e-07 9.34e-07 1.29e-05 1.29e-06 1.9e-07 7.16e-07 1.62e-06 1.26e-06 7.99e-07 4.02e-07
ENSG00000118507 AKAP7 -27475 1.1e-05 1.48e-05 2.52e-06 8.21e-06 2.41e-06 6.12e-06 1.69e-05 2.14e-06 1.24e-05 6.52e-06 1.78e-05 6.94e-06 2.36e-05 5.4e-06 4.18e-06 8.8e-06 7.86e-06 1.06e-05 3.59e-06 3.23e-06 6.77e-06 1.28e-05 1.34e-05 4.21e-06 2.42e-05 4.75e-06 7.27e-06 5.78e-06 1.48e-05 1.54e-05 8.75e-06 1.06e-06 1.43e-06 3.89e-06 6.09e-06 3.8e-06 1.89e-06 2.39e-06 2.81e-06 1.69e-06 1.28e-06 1.71e-05 1.63e-06 2.52e-07 1.05e-06 2.27e-06 1.94e-06 1.02e-06 5.61e-07